Pcdha8 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha8
Entrez Gene ID	116781
Full Name	protocadherin alpha 8
General protein information	Preferred Names protocadherin alpha 8 Names protocadherin alpha-8
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	may play a role in cell-cell adhesion during spermatogenesis [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_053942.1	NP_446394.1	protocadherin alpha-8 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA8	NP_061734.1
Danio rerio (zebrafish)	pcdh2aa1	NP_001009585.1
Danio rerio (zebrafish)	LOC101883818	XP_005157169.1
Danio rerio (zebrafish)	LOC100334403	XP_003199829.1
Danio rerio (zebrafish)	LOC100538109	XP_003199825.1
Danio rerio (zebrafish)	LOC100538188	XP_003199826.1
Danio rerio (zebrafish)	LOC100538273	XP_003199828.2
Danio rerio (zebrafish)	LOC100536131	XP_003199861.2
Danio rerio (zebrafish)	LOC100534663	XP_003199830.2
Danio rerio (zebrafish)	LOC100535010	XP_003199838.2
Danio rerio (zebrafish)	pcdh1a3	NP_001019268.1
Danio rerio (zebrafish)	pcdh1a6	NP_001019272.1
Danio rerio (zebrafish)	pcdh2ab8	NP_001009595.1
Danio rerio (zebrafish)	pcdh2ab9	NP_001009596.1
Danio rerio (zebrafish)	pcdh2ab3	NP_001008484.1
Danio rerio (zebrafish)	LOC100334341	XP_002664325.1
Danio rerio (zebrafish)	LOC100534710	XP_003199831.2
Danio rerio (zebrafish)	LOC100534756	XP_003199832.1
Canis lupus familiaris (dog)	PCDHA5	XP_005617959.1
Danio rerio (zebrafish)	pcdh2ab6	NP_001009593.1
Danio rerio (zebrafish)	pcdh2ab7	NP_001009594.1
Pan troglodytes (chimpanzee)	PCDHA8	NP_001076058.1
Danio rerio (zebrafish)	LOC100332681	XP_002663584.3
Danio rerio (zebrafish)	LOC100334586	XP_002664327.2
Danio rerio (zebrafish)	LOC100535684	XP_003199851.1
Danio rerio (zebrafish)	pcdh2ab5	NP_001008483.1
Danio rerio (zebrafish)	pcdh1a4	NP_001019270.1
Danio rerio (zebrafish)	pcdh2ab2	NP_001009592.1
Danio rerio (zebrafish)	pcdh2ab1	NP_001009588.1
Danio rerio (zebrafish)	pcdh2ab10	NP_001009589.1
Danio rerio (zebrafish)	pcdh2aa15	NP_001009586.1
Danio rerio (zebrafish)	pcdh2aa3	NP_001009587.1
Danio rerio (zebrafish)	LOC101882761	XP_005157163.1
Danio rerio (zebrafish)	LOC101882821	XP_005157164.1
Danio rerio (zebrafish)	LOC101884534	XP_005157172.1
Danio rerio (zebrafish)	LOC100334150	XP_003199824.1
Danio rerio (zebrafish)	LOC100535137	XP_003199839.1
Danio rerio (zebrafish)	LOC100536035	XP_003199859.2
Bos taurus (cattle)	LOC539857	XP_005209576.1
Rattus norvegicus (Norway rat)	Pcdha8	NP_446394.1
Danio rerio (zebrafish)	pcdh2ab12	NP_001009591.1
Danio rerio (zebrafish)	pcdh2ab11	XP_005157162.1
Danio rerio (zebrafish)	LOC101884096	XP_005157170.1
Danio rerio (zebrafish)	LOC100150033	XP_003199834.1
Danio rerio (zebrafish)	LOC100535997	XP_003199858.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

Multiple cadherin superfamily members with unique expression profiles are produced in rat testis.
Johnson KJ, Patel SR, Boekelheide K
Endocrinology141(2)675-83(2000 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha8 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha8 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa11123	NM_053942.1 Latest version!	Rattus norvegicus protocadherin alpha 8 (Pcdha8), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha8 ( NM_053942.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446394.1 Rattus norvegicus protocadherin alpha 8 (Pcdha8), mRNA.

Price & Availability↑

CloneID	ORa11123
Clone ID Related Accession (Same CDS sequence)	NM_053942.1
Accession Version	NM_053942.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2850bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1471968000000
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-8 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113391.1. On Jan 28, 2004 this sequence version replaced XM_344664.1. ##Evidence-Data-START## Transcript exon combination :: AB113391.1, AY573982.1 [ECO:0000332] ##Evidence-Data-END##

ATGGTGTTTG CTCGGCGAGG AGGTCCGGAT TCCCGGCGTC TGCTGCTTTT GCTTCTGCTG 
TTCTCAATCT GGGAAGCTGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATTGCACAG GACCTGGGAC TGGAGCTGGC GGAGCTGGTG 
CCCCGTCTAT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGTAGCG TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCGGTATTCC CCGTGAAAGA ACAAAAACTG 
CATATTTCAG AATCCAGAAT GCTAGACTCT AGGTTTCTGC TAGAGGGCGC ATTCGATGCA 
GACATTGGAG CCAATTCAGC TGTAACTTAT AGGCTTGACT CTAATGATTA CTTCACACTA 
ATTGTGAGTT CAAAGAACGA AGAAAGTAAA CAGGTTGAGC TAGCTTTAAG AAAGTTGTTG 
GACAGAGAGG ATGCTCCTGA GCATAAGCTA CTGCTGACAG CCACGGATGG AGGCAAGCCT 
GAGCTCACAG GCTCGGTTCA GCTGCTGGTC ACTGTGCTGG ATGTGAATGA CAACGCCCCT 
ACTTTCCAAC ACCCTGAGTA TGAAGTGAGA ATCTTGGAAA ACTCAGACAA CGGAACGACA 
GTTATTAGAC TGAATGCTTC TGACAGGGAT GAAGGGACGA ATTCAGCAAT TTCTTACTCT 
TTTAATAGGC TGGTGTCGCC CAGGATTCTT GACCAGTTTA GCATAGATGC AGACACAGGA 
GAAATCGTAA TTCAAGGGAA TTTGGACTTT GAGCAAGTAG ATGTCTACAA AATCCGCGTT 
GACGCGACGG ACAAAGGACA CCCTCCGATG GCAGGCCATT GCACTGTTTT AGTGAGGGTA 
TTGGATGAAA ACGACAATGT GCCTCAGATC ACCTTGACTT CCTTATCCCT GCCTGTTCGA 
GAGGACGCTG CACTGGGTAC TGTCATTGCT CTAATTAGCG TTTCTGATCT GGACTCTGGA 
GCCAATGGGC GGGTGACCTG CTCCTTGACT CCGCACGTCC CCTTCAAGCT GGTGTCCACC 
TTCAAGAATT ACTATTCGCT TGTGCTGGAC AGCGCCCTGG ACCGAGAGAC CACAGCTGAC 
TATCAGGTGG TGGTGACAGC GCGGGACGGG GGTTCCCCTT CTCTGTGTAC CACGGCCAGC 
GTGTCTGTGG AGGTGGCTGA CGTGAACGAC AATGCTCCTG CGTTCGCGCA GCCCGAATAC 
ACGGTGTTTG TGAAAGAGAA CAACCCGCCT GGAGCGCGTA TCTTCACGGT GTCGGCAATG 
GATGAGGATG CACAAGAGAA TGCGCTGGTG TCTTACTCTC TAGTGGAGCG TAGGGTGGGG 
GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG CACGCGGAGA GCGGCAAGGT GTTCGCACTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGCTCCAT CCATTCTTTT GGCTGGTACT GAAGGCTTGG GTAGTGTGGC AACTGATCTG 
ATACAGAGGT CTGTGAGCGT GGGTCAGGTG GTCGCAAAAG TGCGGGCGGT GGACTCAGAT 
TCTGGCTACA ACGCATGGTT GTCGTATGAA CTGCAACCCT CAGTGGGCCC TCGTAGCCCG 
TTTCGTGTTG GGCTGTACAC GGGTGAGATC AGTACAACAC GTGCTCTTGA TGAGTCTGAC 
GCACCTAGGC AGCGTCTGTT GGTATTGGTG AAAGACCATG GTGAGCCAAC TCTGACTTCC 
ACAGCTACCA TCCTTGTGTC CCTGGTTGAG AGTAGCCAGG CACCAAAAGC CTCTTCTCAG 
GCTTCTAGTC GTGCTTCAGT CCCAGAGGCC TCGCTGGTGG ATATCAACGT GTATCTGATC 
ATTGCCATCT GCGCAGTGTC CAGCCTGTTG GTGCTCACGC TGCTGCTGTA TACAGCGTTG 
CGCTGCTCGA CGACGCCCAC CGATGGAGTC TGTGCTCCTG GGAAGCCCAT GCTGGTGTGC 
TCTAGTGAGG TGGGAAGCTG GTCCTACTCA CAGCAGAGGC GGCAAAGGGT GTGCTCCGGA 
GAGGGCCCAC CTAAGACCGA CCTCATGGCT TTTAGTCCCA GTCTTCCACC GCGTCCAGTA 
TCAGAGGTCA TTGGGGAAGG GCAAGATTTA AATGACCATC ATGGCTTTCA ACCCCGACAG 
CCCAACCCTG ACTGGCGCTA CTCTGCCTCG CTAAGAGCCG GCATGCACAG CTCTGTGCAC 
CTGGAGGAGG CTGGCATTCT ACGGGCTGGT CCAGGAGGGC CTGATCAACA GTGGCCAACA 
GTATCCAGTG CAACACCAGA ACCAGAGGCA GGAGAGGTGT CCCCTCCAGT GGGCGCTGGT 
GTCAACAGCA ACAGCTGGAC CTTTAAATAC GGACCCGGCA ACCCCAAACA GCCCGGTCCC 
GGTGAGTTGC CAGACAAATT CATTATCCCA GGATCTCCTG CAATCATCTC CATCCGGCAG 
GAGTCTGCTA ACAACCAAAT TGACAAAAGC GATTTTATAA CCTTCGGCAA AAAGGAGGAG 
ACCAAGAAAA AGAAGAAAAA GAAGAAGGGT AACAAGACCC AGGAGAAAAA AGAGAAAGGG 
AACAGCACGA CGGACAACAG TGACCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446394.1
CDS	1..2850
Translation	MVFARRGGPDSRRLLLLLLLFSIWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSVHLEVIVDRPLQVFHVEVEVRDINDNPPVFPVKEQKLHISESRMLDSRFLLEGAFDADIGANSAVTYRLDSNDYFTLIVSSKNEESKQVELALRKLLDREDAPEHKLLLTATDGGKPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNASDRDEGTNSAISYSFNRLVSPRILDQFSIDADTGEIVIQGNLDFEQVDVYKIRVDATDKGHPPMAGHCTVLVRVLDENDNVPQITLTSLSLPVREDAALGTVIALISVSDLDSGANGRVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTARDGGSPSLCTTASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGARIFTVSAMDEDAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPSILLAGTEGLGSVATDLIQRSVSVGQVVAKVRAVDSDSGYNAWLSYELQPSVGPRSPFRVGLYTGEISTTRALDESDAPRQRLLVLVKDHGEPTLTSTATILVSLVESSQAPKASSQASSRASVPEASLVDINVYLIIAICAVSSLLVLTLLLYTALRCSTTPTDGVCAPGKPMLVCSSEVGSWSYSQQRRQRVCSGEGPPKTDLMAFSPSLPPRPVSEVIGEGQDLNDHHGFQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_053942.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 8 (Pcdha8), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_053942.1

ORF Insert Sequence:

ATGGTGTTTG CTCGGCGAGG AGGTCCGGAT TCCCGGCGTC TGCTGCTTTT GCTTCTGCTG 
TTCTCAATCT GGGAAGCTGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATTGCACAG GACCTGGGAC TGGAGCTGGC GGAGCTGGTG 
CCCCGTCTAT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGTAGCG TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCGGTATTCC CCGTGAAAGA ACAAAAACTG 
CATATTTCAG AATCCAGAAT GCTAGACTCT AGGTTTCTGC TAGAGGGCGC ATTCGATGCA 
GACATTGGAG CCAATTCAGC TGTAACTTAT AGGCTTGACT CTAATGATTA CTTCACACTA 
ATTGTGAGTT CAAAGAACGA AGAAAGTAAA CAGGTTGAGC TAGCTTTAAG AAAGTTGTTG 
GACAGAGAGG ATGCTCCTGA GCATAAGCTA CTGCTGACAG CCACGGATGG AGGCAAGCCT 
GAGCTCACAG GCTCGGTTCA GCTGCTGGTC ACTGTGCTGG ATGTGAATGA CAACGCCCCT 
ACTTTCCAAC ACCCTGAGTA TGAAGTGAGA ATCTTGGAAA ACTCAGACAA CGGAACGACA 
GTTATTAGAC TGAATGCTTC TGACAGGGAT GAAGGGACGA ATTCAGCAAT TTCTTACTCT 
TTTAATAGGC TGGTGTCGCC CAGGATTCTT GACCAGTTTA GCATAGATGC AGACACAGGA 
GAAATCGTAA TTCAAGGGAA TTTGGACTTT GAGCAAGTAG ATGTCTACAA AATCCGCGTT 
GACGCGACGG ACAAAGGACA CCCTCCGATG GCAGGCCATT GCACTGTTTT AGTGAGGGTA 
TTGGATGAAA ACGACAATGT GCCTCAGATC ACCTTGACTT CCTTATCCCT GCCTGTTCGA 
GAGGACGCTG CACTGGGTAC TGTCATTGCT CTAATTAGCG TTTCTGATCT GGACTCTGGA 
GCCAATGGGC GGGTGACCTG CTCCTTGACT CCGCACGTCC CCTTCAAGCT GGTGTCCACC 
TTCAAGAATT ACTATTCGCT TGTGCTGGAC AGCGCCCTGG ACCGAGAGAC CACAGCTGAC 
TATCAGGTGG TGGTGACAGC GCGGGACGGG GGTTCCCCTT CTCTGTGTAC CACGGCCAGC 
GTGTCTGTGG AGGTGGCTGA CGTGAACGAC AATGCTCCTG CGTTCGCGCA GCCCGAATAC 
ACGGTGTTTG TGAAAGAGAA CAACCCGCCT GGAGCGCGTA TCTTCACGGT GTCGGCAATG 
GATGAGGATG CACAAGAGAA TGCGCTGGTG TCTTACTCTC TAGTGGAGCG TAGGGTGGGG 
GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG CACGCGGAGA GCGGCAAGGT GTTCGCACTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGCTCCAT CCATTCTTTT GGCTGGTACT GAAGGCTTGG GTAGTGTGGC AACTGATCTG 
ATACAGAGGT CTGTGAGCGT GGGTCAGGTG GTCGCAAAAG TGCGGGCGGT GGACTCAGAT 
TCTGGCTACA ACGCATGGTT GTCGTATGAA CTGCAACCCT CAGTGGGCCC TCGTAGCCCG 
TTTCGTGTTG GGCTGTACAC GGGTGAGATC AGTACAACAC GTGCTCTTGA TGAGTCTGAC 
GCACCTAGGC AGCGTCTGTT GGTATTGGTG AAAGACCATG GTGAGCCAAC TCTGACTTCC 
ACAGCTACCA TCCTTGTGTC CCTGGTTGAG AGTAGCCAGG CACCAAAAGC CTCTTCTCAG 
GCTTCTAGTC GTGCTTCAGT CCCAGAGGCC TCGCTGGTGG ATATCAACGT GTATCTGATC 
ATTGCCATCT GCGCAGTGTC CAGCCTGTTG GTGCTCACGC TGCTGCTGTA TACAGCGTTG 
CGCTGCTCGA CGACGCCCAC CGATGGAGTC TGTGCTCCTG GGAAGCCCAT GCTGGTGTGC 
TCTAGTGAGG TGGGAAGCTG GTCCTACTCA CAGCAGAGGC GGCAAAGGGT GTGCTCCGGA 
GAGGGCCCAC CTAAGACCGA CCTCATGGCT TTTAGTCCCA GTCTTCCACC GCGTCCAGTA 
TCAGAGGTCA TTGGGGAAGG GCAAGATTTA AATGACCATC ATGGCTTTCA ACCCCGACAG 
CCCAACCCTG ACTGGCGCTA CTCTGCCTCG CTAAGAGCCG GCATGCACAG CTCTGTGCAC 
CTGGAGGAGG CTGGCATTCT ACGGGCTGGT CCAGGAGGGC CTGATCAACA GTGGCCAACA 
GTATCCAGTG CAACACCAGA ACCAGAGGCA GGAGAGGTGT CCCCTCCAGT GGGCGCTGGT 
GTCAACAGCA ACAGCTGGAC CTTTAAATAC GGACCCGGCA ACCCCAAACA GCCCGGTCCC 
GGTGAGTTGC CAGACAAATT CATTATCCCA GGATCTCCTG CAATCATCTC CATCCGGCAG 
GAGTCTGCTA ACAACCAAAT TGACAAAAGC GATTTTATAA CCTTCGGCAA AAAGGAGGAG 
ACCAAGAAAA AGAAGAAAAA GAAGAAGGGT AACAAGACCC AGGAGAAAAA AGAGAAAGGG 
AACAGCACGA CGGACAACAG TGACCAGTGA