pcdh2aa3 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	pcdh2aa3
Entrez Gene ID	493597
Full Name	protocadherin 2 alpha a 3
Synonyms	DrPcdh2a10,Pcdh2a10
General protein information	Preferred Names protocadherin 2 alpha a 3 Names protocadherin 2 alpha a 3 pcdh2aa3-vCP protocadherin 2 alpha 10
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001009587.2	NP_001009587.2	protocadherin 2 alpha a 3 precursor
NM_001009587.1	NP_001009587.1	protocadherin 2 alpha a 3 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA8	NP_061734.1
Danio rerio (zebrafish)	pcdh2aa1	NP_001009585.1
Danio rerio (zebrafish)	LOC101883818	XP_005157169.1
Danio rerio (zebrafish)	LOC100334403	XP_003199829.1
Danio rerio (zebrafish)	LOC100538109	XP_003199825.1
Danio rerio (zebrafish)	LOC100538188	XP_003199826.1
Danio rerio (zebrafish)	LOC100538273	XP_003199828.2
Danio rerio (zebrafish)	LOC100536131	XP_003199861.2
Danio rerio (zebrafish)	LOC100534663	XP_003199830.2
Danio rerio (zebrafish)	LOC100535010	XP_003199838.2
Danio rerio (zebrafish)	pcdh1a3	NP_001019268.1
Danio rerio (zebrafish)	pcdh1a6	NP_001019272.1
Danio rerio (zebrafish)	pcdh2ab8	NP_001009595.1
Danio rerio (zebrafish)	pcdh2ab9	NP_001009596.1
Danio rerio (zebrafish)	pcdh2ab3	NP_001008484.1
Danio rerio (zebrafish)	LOC100334341	XP_002664325.1
Danio rerio (zebrafish)	LOC100534710	XP_003199831.2
Danio rerio (zebrafish)	LOC100534756	XP_003199832.1
Canis lupus familiaris (dog)	PCDHA5	XP_005617959.1
Danio rerio (zebrafish)	pcdh2ab6	NP_001009593.1
Danio rerio (zebrafish)	pcdh2ab7	NP_001009594.1
Pan troglodytes (chimpanzee)	PCDHA8	NP_001076058.1
Danio rerio (zebrafish)	LOC100332681	XP_002663584.3
Danio rerio (zebrafish)	LOC100334586	XP_002664327.2
Danio rerio (zebrafish)	LOC100535684	XP_003199851.1
Danio rerio (zebrafish)	pcdh2ab5	NP_001008483.1
Danio rerio (zebrafish)	pcdh1a4	NP_001019270.1
Danio rerio (zebrafish)	pcdh2ab2	NP_001009592.1
Danio rerio (zebrafish)	pcdh2ab1	NP_001009588.1
Danio rerio (zebrafish)	pcdh2ab10	NP_001009589.1
Danio rerio (zebrafish)	pcdh2aa15	NP_001009586.1
Danio rerio (zebrafish)	pcdh2aa3	NP_001009587.1
Danio rerio (zebrafish)	LOC101882761	XP_005157163.1
Danio rerio (zebrafish)	LOC101882821	XP_005157164.1
Danio rerio (zebrafish)	LOC101884534	XP_005157172.1
Danio rerio (zebrafish)	LOC100334150	XP_003199824.1
Danio rerio (zebrafish)	LOC100535137	XP_003199839.1
Danio rerio (zebrafish)	LOC100536035	XP_003199859.2
Bos taurus (cattle)	LOC539857	XP_005209576.1
Rattus norvegicus (Norway rat)	Pcdha8	NP_446394.1
Danio rerio (zebrafish)	pcdh2ab12	NP_001009591.1
Danio rerio (zebrafish)	pcdh2ab11	XP_005157162.1
Danio rerio (zebrafish)	LOC101884096	XP_005157170.1
Danio rerio (zebrafish)	LOC100150033	XP_003199834.1
Danio rerio (zebrafish)	LOC100535997	XP_003199858.1

Gene Ontology
Bibliography

Related articles in PubMed

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Genomic organization and transcripts of the zebrafish Protocadherin genes.
Tada MN, Senzaki K, Tai Y, Morishita H, Tanaka YZ, Murata Y, Ishii Y, Asakawa S, Shimizu N, Sugino H, Yagi T
Gene340(2)197-211(2004 Oct)

Gene conversion and the evolution of protocadherin gene cluster diversity.
Noonan JP, Grimwood J, Schmutz J, Dickson M, Myers RM
Genome research14(3)354-66(2004 Mar)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pcdh2aa3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pcdh2aa3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa05077	NM_001009587.1 Latest version!	Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00
ODa159724	NM_001009587.2 Latest version!	Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

pcdh2aa3 ( NM_001009587.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001009587.1 Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.

Price & Availability↑

CloneID	ODa05077
Clone ID Related Accession (Same CDS sequence)	NM_001009587.1
Accession Version	NM_001009587.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2805bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1366128000000
Organism	Danio rerio(zebrafish)
Product	protocadherin 2 alpha a 3 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB160959.1. ##Evidence-Data-START## Transcript exon combination :: AB160959.1 [ECO:0000332] ##Evidence-Data-END##

ATGGAAGCTG GAGGACAAAG GCGCACAGGG GAGCACTGGT GGATGATCAT CTGTTTCTGC 
TTTATTCTGT GCTTTGGGCA GCAGCTTTCA GCTCAAATAA GATACTCGAT TCCAGAGGAA 
GTAAAAGAGG GATTTGTTGT GGGAAATATC GCCAAGGATT TGGGACTTGA TGTCAGCAGT 
TTGATGGACA GGCGATTTCG CATCGTTTCA GGATCGGATG ATTCGCAGTT CGTGGTAAAT 
CCGAACAATG GTGTCTTGCG TGTTCAAAGG AAAATCGACA GAGAGGAGCT GTGTGATGGT 
ATTGGAGCAT GCTTGATTAA TCTTAAAATA GTGGTGGAAA ATCCACTTGA GATTCATTAT 
ATTGCAGTTG AAATAACTGA TGTTAACGAT CACTCGCCAA CATTCACAGA AAAAGAAAAG 
CGATTAGAAA TTTCTGAAAA CACTCTAATA GGGACGCGTT TTCAGCTGCA AGCTGCGCGT 
GACCCCGATA GTGGAGTGAA TTCTGTGCGC TCGTATAAAT TAAGTCAAAA TGAGCATTTT 
GATTTAGAAA TAAGAGACCG GGCAGAGGAC AAATTGCCTT TTCTGGTTTT ACAAAAGCCT 
CTTGATCGGG AGAATAAAGC TGAACATTAT CTAATATTAA CAGCAATAGA TGGTGGCAAT 
CCGCAAAGAT CAGGAACGCT GAACATAACA GTAATTGTGC TTGACGTCAA TGATAACCGC 
CCTATGTTTA GCCATGATGT CTATTCTTCA ACTGTGCACG AAAACGTGCA ACTTGGAACA 
TTAGTATTGA AAGTTATGGC AAGCGATTCT GATTACGGCC CTAATGGTGA AGTGTCGTAC 
TCTTTTGGGG GTGACAACAG CGACAATATA TTTCATATAT TTAGCTTGGA TCGAATAACT 
GGTGAAATAC GAGTAACTGG AGAGGTTGAC TTTGAAAAGA ACAATGTTTA TAAACTGGAT 
ATACAGGCAG TTGACAGTGG ACAGCCGCCT TTAAACACAG ATTGTAGAGT AATAATAAAA 
ATACTTGACT TAAATGATAA TAAGCCTACT ATTGAAGTGA CGTCACTTTC GAATGTCGTG 
TCTGAGGATT CCAAGCCTGG TACTCTAATC TCACTCATTA GTGTTACTGA TAGAGACACC 
GGTATTAACG GGAGAGTTGT GTGTTCTCTC TCAGAGCATG TTCCCTTTGA GTTAAAACCA 
TCAGTTCAGG AAAACATGTT CTCTTTAGTG ACTAAAGGGA AACTGGATCG TGAAACTTTA 
TCTCATTTTG ACATTACAAT AACAGCTACT GACTTGGGTC AGCCTCCGCT GTCCTCTTAT 
AGGACTCTAA GCGTGCAGGT GTCAGATGTA AACGATAACC CACCTGAATT TAGTCTAAAT 
CCAGTAGAAT TGTATATGAT TGAAAACAAT GCTGCAGGAG CGCCCATTCT CATGCTTAGT 
GCTTTTGATA AAGATCTAAA TGAAAATGCT ATAATTTCAT ACCAGATTAT TAAAGGGAAT 
GGATCACAAA GTGATTTGAC ATCTTTCCTA AATGTCAATT CGGAGACAGG CGCAGTTTAC 
GCACTTAAAA GTTTTGATTT TGAAACAGTT AAAAAGTTCC AGTTCCACAT ACTCGCCACA 
GACTCTGGAA GTCCATCTCT GAGCAGTAAC GTGACAGTGA ACGTGTTTAT TCTGGATCAG 
AACGACAACG TTCCAGTGAT CTTATATCCA GTCAGCGCTA ACGGTTCTGC TGAGGGTGTG 
GAAGAGATTC CCCGTAATGT GAACGCAGGT CATTTGGTGA CTAAAGTCAG AGCCTATGAC 
GCAGATATAG GATACAACGG CTGGTTATTA TTCTCACTGC AGGAAGTTAG TGAGCACAGT 
CTCTTTGCTT TGGACCGCTA TACAGGACAG ATAAGGACCC TTCGCTCATT CACAGAAACA 
GACGAGGCCC AGCATAAACT GGTCATACTG GTCAAAGACA ATGGGAACGT TTCCCTCTCA 
GCAACAGCGA CTGTGATTGT CAAAGTTGTG GAGCCCAAAG AGGCTTTTGC AGCTTCTGAT 
GTTAAAAACG CAGAGAAAGA CGAGGAGGAA AACAACGTGA CATTTTATTT GATCATCACT 
TTGGGCTCGG TTTCGGTGCT TTTCGTCATC AGCATCATCG TGTTGATTGT AATGCAGTGC 
TCCAAATCTA CAGACTATTC GTCCAAGTAT TTACAGGACA CAAATTATGA CGGGACTCTG 
TGTCACAGCA TCCAGTACAG ATCTGGAGAC AAACGCTACA TGTTAGTTGG ACCCAGAATG 
AGTATCGGCT CTACTATAGC ACCAGGCAGT AATAGGAATA CTCTAGTCAT ACCAGATCGC 
AGGAGGAGAG ATTCTGGAGA GCCTAAAGTT CCCAGTTCAG ACTGGAGATA TTCGGCGTCC 
CTCAGAGCAG GAATGCAAAG TTCTGTCCGT ATGGAGGAGT CCTCTGTGAT GCAGGGAGCT 
CAAGGAGTCC TGGTTCAGAA CTGGCCCACC GTTTCCAGCG CTCCCGATAA TGAGGGTGGA 
GAGGTGTCTC CACCTGTAGG CGCTGGAGTG GACAGCAACA GCTGGCATTT CCGATATGGG 
CCGGGTCCCG GAGGCCCTCC GCACCTGAAA CCCGGTGAAG TTCCTCCCGA AGCCTTCATC 
ATCCCTGGAT CTCCGGCCAT TATTTCCATC AGACAAGGAC AGGACGGTGA CGACAAGAGC 
GACTTTATTA CCTTTGGGAA AAAGGAGGAG GCCAAGAAGT TAAAGAAGAA AAAGAAGAAG 
GAGAAGAAGG ATAAGCGGGA GAAAGGGAAG GATGATGATG ATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001009587.1
CDS	1..2805
Translation	MEAGGQRRTGEHWWMIICFCFILCFGQQLSAQIRYSIPEEVKEGFVVGNIAKDLGLDVSSLMDRRFRIVSGSDDSQFVVNPNNGVLRVQRKIDREELCDGIGACLINLKIVVENPLEIHYIAVEITDVNDHSPTFTEKEKRLEISENTLIGTRFQLQAARDPDSGVNSVRSYKLSQNEHFDLEIRDRAEDKLPFLVLQKPLDRENKAEHYLILTAIDGGNPQRSGTLNITVIVLDVNDNRPMFSHDVYSSTVHENVQLGTLVLKVMASDSDYGPNGEVSYSFGGDNSDNIFHIFSLDRITGEIRVTGEVDFEKNNVYKLDIQAVDSGQPPLNTDCRVIIKILDLNDNKPTIEVTSLSNVVSEDSKPGTLISLISVTDRDTGINGRVVCSLSEHVPFELKPSVQENMFSLVTKGKLDRETLSHFDITITATDLGQPPLSSYRTLSVQVSDVNDNPPEFSLNPVELYMIENNAAGAPILMLSAFDKDLNENAIISYQIIKGNGSQSDLTSFLNVNSETGAVYALKSFDFETVKKFQFHILATDSGSPSLSSNVTVNVFILDQNDNVPVILYPVSANGSAEGVEEIPRNVNAGHLVTKVRAYDADIGYNGWLLFSLQEVSEHSLFALDRYTGQIRTLRSFTETDEAQHKLVILVKDNGNVSLSATATVIVKVVEPKEAFAASDVKNAEKDEEENNVTFYLIITLGSVSVLFVISIIVLIVMQCSKSTDYSSKYLQDTNYDGTLCHSIQYRSGDKRYMLVGPRMSIGSTIAPGSNRNTLVIPDRRRRDSGEPKVPSSDWRYSASLRAGMQSSVRMEESSVMQGAQGVLVQNWPTVSSAPDNEGGEVSPPVGAGVDSNSWHFRYGPGPGGPPHLKPGEVPPEAFIIPGSPAIISIRQGQDGDDKSDFITFGKKEEAKKLKKKKKKEKKDKREKGKDDDD

Target ORF information:

RefSeq Version	NM_001009587.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001009587.1

ORF Insert Sequence:

ATGGAAGCTG GAGGACAAAG GCGCACAGGG GAGCACTGGT GGATGATCAT CTGTTTCTGC 
TTTATTCTGT GCTTTGGGCA GCAGCTTTCA GCTCAAATAA GATACTCGAT TCCAGAGGAA 
GTAAAAGAGG GATTTGTTGT GGGAAATATC GCCAAGGATT TGGGACTTGA TGTCAGCAGT 
TTGATGGACA GGCGATTTCG CATCGTTTCA GGATCGGATG ATTCGCAGTT CGTGGTAAAT 
CCGAACAATG GTGTCTTGCG TGTTCAAAGG AAAATCGACA GAGAGGAGCT GTGTGATGGT 
ATTGGAGCAT GCTTGATTAA TCTTAAAATA GTGGTGGAAA ATCCACTTGA GATTCATTAT 
ATTGCAGTTG AAATAACTGA TGTTAACGAT CACTCGCCAA CATTCACAGA AAAAGAAAAG 
CGATTAGAAA TTTCTGAAAA CACTCTAATA GGGACGCGTT TTCAGCTGCA AGCTGCGCGT 
GACCCCGATA GTGGAGTGAA TTCTGTGCGC TCGTATAAAT TAAGTCAAAA TGAGCATTTT 
GATTTAGAAA TAAGAGACCG GGCAGAGGAC AAATTGCCTT TTCTGGTTTT ACAAAAGCCT 
CTTGATCGGG AGAATAAAGC TGAACATTAT CTAATATTAA CAGCAATAGA TGGTGGCAAT 
CCGCAAAGAT CAGGAACGCT GAACATAACA GTAATTGTGC TTGACGTCAA TGATAACCGC 
CCTATGTTTA GCCATGATGT CTATTCTTCA ACTGTGCACG AAAACGTGCA ACTTGGAACA 
TTAGTATTGA AAGTTATGGC AAGCGATTCT GATTACGGCC CTAATGGTGA AGTGTCGTAC 
TCTTTTGGGG GTGACAACAG CGACAATATA TTTCATATAT TTAGCTTGGA TCGAATAACT 
GGTGAAATAC GAGTAACTGG AGAGGTTGAC TTTGAAAAGA ACAATGTTTA TAAACTGGAT 
ATACAGGCAG TTGACAGTGG ACAGCCGCCT TTAAACACAG ATTGTAGAGT AATAATAAAA 
ATACTTGACT TAAATGATAA TAAGCCTACT ATTGAAGTGA CGTCACTTTC GAATGTCGTG 
TCTGAGGATT CCAAGCCTGG TACTCTAATC TCACTCATTA GTGTTACTGA TAGAGACACC 
GGTATTAACG GGAGAGTTGT GTGTTCTCTC TCAGAGCATG TTCCCTTTGA GTTAAAACCA 
TCAGTTCAGG AAAACATGTT CTCTTTAGTG ACTAAAGGGA AACTGGATCG TGAAACTTTA 
TCTCATTTTG ACATTACAAT AACAGCTACT GACTTGGGTC AGCCTCCGCT GTCCTCTTAT 
AGGACTCTAA GCGTGCAGGT GTCAGATGTA AACGATAACC CACCTGAATT TAGTCTAAAT 
CCAGTAGAAT TGTATATGAT TGAAAACAAT GCTGCAGGAG CGCCCATTCT CATGCTTAGT 
GCTTTTGATA AAGATCTAAA TGAAAATGCT ATAATTTCAT ACCAGATTAT TAAAGGGAAT 
GGATCACAAA GTGATTTGAC ATCTTTCCTA AATGTCAATT CGGAGACAGG CGCAGTTTAC 
GCACTTAAAA GTTTTGATTT TGAAACAGTT AAAAAGTTCC AGTTCCACAT ACTCGCCACA 
GACTCTGGAA GTCCATCTCT GAGCAGTAAC GTGACAGTGA ACGTGTTTAT TCTGGATCAG 
AACGACAACG TTCCAGTGAT CTTATATCCA GTCAGCGCTA ACGGTTCTGC TGAGGGTGTG 
GAAGAGATTC CCCGTAATGT GAACGCAGGT CATTTGGTGA CTAAAGTCAG AGCCTATGAC 
GCAGATATAG GATACAACGG CTGGTTATTA TTCTCACTGC AGGAAGTTAG TGAGCACAGT 
CTCTTTGCTT TGGACCGCTA TACAGGACAG ATAAGGACCC TTCGCTCATT CACAGAAACA 
GACGAGGCCC AGCATAAACT GGTCATACTG GTCAAAGACA ATGGGAACGT TTCCCTCTCA 
GCAACAGCGA CTGTGATTGT CAAAGTTGTG GAGCCCAAAG AGGCTTTTGC AGCTTCTGAT 
GTTAAAAACG CAGAGAAAGA CGAGGAGGAA AACAACGTGA CATTTTATTT GATCATCACT 
TTGGGCTCGG TTTCGGTGCT TTTCGTCATC AGCATCATCG TGTTGATTGT AATGCAGTGC 
TCCAAATCTA CAGACTATTC GTCCAAGTAT TTACAGGACA CAAATTATGA CGGGACTCTG 
TGTCACAGCA TCCAGTACAG ATCTGGAGAC AAACGCTACA TGTTAGTTGG ACCCAGAATG 
AGTATCGGCT CTACTATAGC ACCAGGCAGT AATAGGAATA CTCTAGTCAT ACCAGATCGC 
AGGAGGAGAG ATTCTGGAGA GCCTAAAGTT CCCAGTTCAG ACTGGAGATA TTCGGCGTCC 
CTCAGAGCAG GAATGCAAAG TTCTGTCCGT ATGGAGGAGT CCTCTGTGAT GCAGGGAGCT 
CAAGGAGTCC TGGTTCAGAA CTGGCCCACC GTTTCCAGCG CTCCCGATAA TGAGGGTGGA 
GAGGTGTCTC CACCTGTAGG CGCTGGAGTG GACAGCAACA GCTGGCATTT CCGATATGGG 
CCGGGTCCCG GAGGCCCTCC GCACCTGAAA CCCGGTGAAG TTCCTCCCGA AGCCTTCATC 
ATCCCTGGAT CTCCGGCCAT TATTTCCATC AGACAAGGAC AGGACGGTGA CGACAAGAGC 
GACTTTATTA CCTTTGGGAA AAAGGAGGAG GCCAAGAAGT TAAAGAAGAA AAAGAAGAAG 
GAGAAGAAGG ATAAGCGGGA GAAAGGGAAG GATGATGATG ATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

pcdh2aa3 ( NM_001009587.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001009587.2 Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.

Price & Availability↑

CloneID	ODa159724
Clone ID Related Accession (Same CDS sequence)	NM_001009587.2
Accession Version	NM_001009587.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2805bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1535040000000
Organism	Danio rerio(zebrafish)
Product	protocadherin 2 alpha a 3 precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR847851.19 and CT573264.9. On Aug 25, 2018 this sequence version replaced NM_001009587.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AB160959.1 [ECO:0000332] ##Evidence-Data-END##

ATGGAAGCTG GAGGACAAAG GCGCACAGGG GAGCACTGGT GGATGATCAT CTGTTTCTGC 
TTTATTCTGT GCTTTGGGCA GCAGCTTTCA GCTCAAATAA GATACTCGAT TCCAGAGGAA 
GTAAAAGAGG GATTTGTTGT GGGAAATATC GCCAAGGATT TGGGACTTGA TGTCAGCAGT 
TTGATGGACA GGCGATTTCG CATCGTTTCA GGATCGGATG ATTCGCAGTT CGTGGTAAAT 
CCGAACAATG GTGTCTTGCG TGTTCAAAGG AAAATCGACA GAGAGGAGCT GTGTGATGGT 
ATTGGAGCAT GCTTGATTAA TCTTAAAATA GTGGTGGAAA ATCCACTTGA GATTCATTAT 
ATTGCAGTTG AAATAACTGA TGTTAACGAT CACTCGCCAA CATTCACAGA AAAAGAAAAG 
CGATTAGAAA TTTCTGAAAA CACTCTAATA GGGACGCGTT TTCAGCTGCA AGCTGCGCGT 
GACCCCGATA GTGGAGTGAA TTCTGTGCGC TCGTATAAAT TAAGTCAAAA TGAGCATTTT 
GATTTAGAAA TAAGAGACCG GGCAGAGGAC AAATTGCCTT TTCTGGTTTT ACAAAAGCCT 
CTTGATCGGG AGAATAAAGC TGAACATTAT CTAATATTAA CAGCAATAGA TGGTGGCAAT 
CCGCAAAGAT CAGGAACGCT GAACATAACA GTAATTGTGC TTGACGTCAA TGATAACCGC 
CCTATGTTTA GCCATGATGT CTATTCTTCA ACTGTGCACG AAAACGTGCA ACTTGGAACA 
TTAGTATTGA AAGTTATGGC AAGCGATTCT GATTACGGCC CTAATGGTGA AGTGTCGTAC 
TCTTTTGGGG GTGACAACAG CGACAATATA TTTCATATAT TTAGCTTGGA TCGAATAACT 
GGTGAAATAC GAGTAACTGG AGAGGTTGAC TTTGAAAAGA ACAATGTTTA TAAACTGGAT 
ATACAGGCAG TTGACAGTGG ACAGCCGCCT TTAAACACAG ATTGTAGAGT AATAATAAAA 
ATACTTGACT TAAATGATAA TAAGCCTACT ATTGAAGTGA CGTCACTTTC GAATGTCGTG 
TCTGAGGATT CCAAGCCTGG TACTCTAATC TCACTCATTA GTGTTACTGA TAGAGACACC 
GGTATTAACG GGAGAGTTGT GTGTTCTCTC TCAGAGCATG TTCCCTTTGA ATTAAAACCA 
TCAGTTCAGG AAAACATGTT CTCTTTAGTG ACTAAAGGGA AACTGGATCG TGAAACTTTA 
TCTCATTTTG ACATTACAAT AACAGCTACT GACTTGGGTC AGCCTCCGCT GTCCTCTTAT 
AAGACTCTGA GCGTGCAGGT GTCAGATGTA AACGATAACC CACCTGAATT TAGTCTAAAT 
CCTGTCGAAT TATATATGAT TGAAAACAAT GCTGCAGGAG CGCCCATTCT CACGCTTAGT 
GCTTTTGATA AAGATCTAAA TGAAAATGCT ATCATTTCAT ACCAGATTAT TAAAGGGAAT 
GGATCACAAA GTGATTTGAC ATCTTTCCTA AATGTCAATT CGGAGACAGG CGCAGTTTAC 
GCACTTAAAA GTTTTGATTT TGAAACAGTT AAAAAGTTCC AGTTCCACAT ACTCGCCACA 
GACTCTGGAA GTCCATCTCT GAGCAGTAAC GTGACAGTGA ACGTGTTTAT TCTGGACCAG 
AACGACAACG TTCCAGTGAT CTTATATCCA GTCAGCGCTA ACGGTTCTGC TGAGGGTGTG 
GAAGAGATTC CCCGTAATGT GAACGCAGGT CATTTGGTGA CTAAAGTCAG AGCCTATGAC 
GCAGATATAG GATACAACGG CTGGTTATTA TTCTCACTGC AGGAAGTTAG TGAGCACAGT 
CTCTTTGCTT TGGACCGCTA TACAGGACAG ATAAGGACCC TTCGCTCATT CACAGAAACA 
GACGAGGCCC AGCATAAACT GGTCATACTG GTCAAAGACA ATGGGAACGT TTCCCTCTCA 
GCAACAGCGA CTGTGATTGT CAAAGTTGTG GAGCCCAAAG AGGCTTTTGC AGCTTCTGAT 
GTTAAAAACG CAGTGAAAGA CGAGGAGGAA AACAACGTGA CATTTTATTT GATCATCACT 
TTGGGCTCGG TTTCGGTGCT TTTCGTCATC AGCATCATCG TGTTGATTGT AATGCAGTGC 
TCCAAATCTA CAGACTATTC GTCCAAGTAT TTACAGGACA CAAATTATGA CGGGACTCTG 
TGTCACAGCA TCCAGTACAG ATCAGGAGAC AAACGCTACA TGTTAGTTGG ACCCAGAATG 
AGTATCGGCT CTACTATAGC ACCAGGCAGT AATAGGAATA CTCTAGTCAT ACCAGATCGC 
AGGAGGAGAG ACTCTGGAGA GCCTAAAGTT CCCAGTTCAG ACTGGAGATA TTCGGCGTCC 
CTCAGAGCAG GAATGCAAAG TTCTGTCCGT ATGGAGGAGT CCTCTGTGAT GCAGGGAGCT 
CAAGGAGTCC TGGTTCAGAA CTGGCCCACC GTTTCCAGCG CTCCCGATAA TGAGGGTGGA 
GAGGTGTCTC CACCTGTAGG CGCTGGAGTG GACAGCAACA GCTGGCATTT CCGATATGGG 
CCGGGTCCCG GAGGCCCTCC GCACCTGAAA CCCGGTGAAG TTCCTCCCGA AGCCTTCATC 
ATCCCTGGAT CTCCGGCCAT TATTTCCATC AGACAAGGAC AGGACGGTGA CGACAAGAGC 
GACTTTATTA CCTTTGGGAA AAAGGAGGAG GCCAAGAAGT TAAAGAAGAA AAAGAAGAAG 
GAGAAGAAGG ATAAGCGGGA GAAAGGGAAG GATGATGATG ATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001009587.2
CDS	1..2805
Translation	MEAGGQRRTGEHWWMIICFCFILCFGQQLSAQIRYSIPEEVKEGFVVGNIAKDLGLDVSSLMDRRFRIVSGSDDSQFVVNPNNGVLRVQRKIDREELCDGIGACLINLKIVVENPLEIHYIAVEITDVNDHSPTFTEKEKRLEISENTLIGTRFQLQAARDPDSGVNSVRSYKLSQNEHFDLEIRDRAEDKLPFLVLQKPLDRENKAEHYLILTAIDGGNPQRSGTLNITVIVLDVNDNRPMFSHDVYSSTVHENVQLGTLVLKVMASDSDYGPNGEVSYSFGGDNSDNIFHIFSLDRITGEIRVTGEVDFEKNNVYKLDIQAVDSGQPPLNTDCRVIIKILDLNDNKPTIEVTSLSNVVSEDSKPGTLISLISVTDRDTGINGRVVCSLSEHVPFELKPSVQENMFSLVTKGKLDRETLSHFDITITATDLGQPPLSSYKTLSVQVSDVNDNPPEFSLNPVELYMIENNAAGAPILTLSAFDKDLNENAIISYQIIKGNGSQSDLTSFLNVNSETGAVYALKSFDFETVKKFQFHILATDSGSPSLSSNVTVNVFILDQNDNVPVILYPVSANGSAEGVEEIPRNVNAGHLVTKVRAYDADIGYNGWLLFSLQEVSEHSLFALDRYTGQIRTLRSFTETDEAQHKLVILVKDNGNVSLSATATVIVKVVEPKEAFAASDVKNAVKDEEENNVTFYLIITLGSVSVLFVISIIVLIVMQCSKSTDYSSKYLQDTNYDGTLCHSIQYRSGDKRYMLVGPRMSIGSTIAPGSNRNTLVIPDRRRRDSGEPKVPSSDWRYSASLRAGMQSSVRMEESSVMQGAQGVLVQNWPTVSSAPDNEGGEVSPPVGAGVDSNSWHFRYGPGPGGPPHLKPGEVPPEAFIIPGSPAIISIRQGQDGDDKSDFITFGKKEEAKKLKKKKKKEKKDKREKGKDDDD

Target ORF information:

RefSeq Version	NM_001009587.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio protocadherin 2 alpha a 3 (pcdh2aa3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001009587.2

ORF Insert Sequence:

ATGGAAGCTG GAGGACAAAG GCGCACAGGG GAGCACTGGT GGATGATCAT CTGTTTCTGC 
TTTATTCTGT GCTTTGGGCA GCAGCTTTCA GCTCAAATAA GATACTCGAT TCCAGAGGAA 
GTAAAAGAGG GATTTGTTGT GGGAAATATC GCCAAGGATT TGGGACTTGA TGTCAGCAGT 
TTGATGGACA GGCGATTTCG CATCGTTTCA GGATCGGATG ATTCGCAGTT CGTGGTAAAT 
CCGAACAATG GTGTCTTGCG TGTTCAAAGG AAAATCGACA GAGAGGAGCT GTGTGATGGT 
ATTGGAGCAT GCTTGATTAA TCTTAAAATA GTGGTGGAAA ATCCACTTGA GATTCATTAT 
ATTGCAGTTG AAATAACTGA TGTTAACGAT CACTCGCCAA CATTCACAGA AAAAGAAAAG 
CGATTAGAAA TTTCTGAAAA CACTCTAATA GGGACGCGTT TTCAGCTGCA AGCTGCGCGT 
GACCCCGATA GTGGAGTGAA TTCTGTGCGC TCGTATAAAT TAAGTCAAAA TGAGCATTTT 
GATTTAGAAA TAAGAGACCG GGCAGAGGAC AAATTGCCTT TTCTGGTTTT ACAAAAGCCT 
CTTGATCGGG AGAATAAAGC TGAACATTAT CTAATATTAA CAGCAATAGA TGGTGGCAAT 
CCGCAAAGAT CAGGAACGCT GAACATAACA GTAATTGTGC TTGACGTCAA TGATAACCGC 
CCTATGTTTA GCCATGATGT CTATTCTTCA ACTGTGCACG AAAACGTGCA ACTTGGAACA 
TTAGTATTGA AAGTTATGGC AAGCGATTCT GATTACGGCC CTAATGGTGA AGTGTCGTAC 
TCTTTTGGGG GTGACAACAG CGACAATATA TTTCATATAT TTAGCTTGGA TCGAATAACT 
GGTGAAATAC GAGTAACTGG AGAGGTTGAC TTTGAAAAGA ACAATGTTTA TAAACTGGAT 
ATACAGGCAG TTGACAGTGG ACAGCCGCCT TTAAACACAG ATTGTAGAGT AATAATAAAA 
ATACTTGACT TAAATGATAA TAAGCCTACT ATTGAAGTGA CGTCACTTTC GAATGTCGTG 
TCTGAGGATT CCAAGCCTGG TACTCTAATC TCACTCATTA GTGTTACTGA TAGAGACACC 
GGTATTAACG GGAGAGTTGT GTGTTCTCTC TCAGAGCATG TTCCCTTTGA ATTAAAACCA 
TCAGTTCAGG AAAACATGTT CTCTTTAGTG ACTAAAGGGA AACTGGATCG TGAAACTTTA 
TCTCATTTTG ACATTACAAT AACAGCTACT GACTTGGGTC AGCCTCCGCT GTCCTCTTAT 
AAGACTCTGA GCGTGCAGGT GTCAGATGTA AACGATAACC CACCTGAATT TAGTCTAAAT 
CCTGTCGAAT TATATATGAT TGAAAACAAT GCTGCAGGAG CGCCCATTCT CACGCTTAGT 
GCTTTTGATA AAGATCTAAA TGAAAATGCT ATCATTTCAT ACCAGATTAT TAAAGGGAAT 
GGATCACAAA GTGATTTGAC ATCTTTCCTA AATGTCAATT CGGAGACAGG CGCAGTTTAC 
GCACTTAAAA GTTTTGATTT TGAAACAGTT AAAAAGTTCC AGTTCCACAT ACTCGCCACA 
GACTCTGGAA GTCCATCTCT GAGCAGTAAC GTGACAGTGA ACGTGTTTAT TCTGGACCAG 
AACGACAACG TTCCAGTGAT CTTATATCCA GTCAGCGCTA ACGGTTCTGC TGAGGGTGTG 
GAAGAGATTC CCCGTAATGT GAACGCAGGT CATTTGGTGA CTAAAGTCAG AGCCTATGAC 
GCAGATATAG GATACAACGG CTGGTTATTA TTCTCACTGC AGGAAGTTAG TGAGCACAGT 
CTCTTTGCTT TGGACCGCTA TACAGGACAG ATAAGGACCC TTCGCTCATT CACAGAAACA 
GACGAGGCCC AGCATAAACT GGTCATACTG GTCAAAGACA ATGGGAACGT TTCCCTCTCA 
GCAACAGCGA CTGTGATTGT CAAAGTTGTG GAGCCCAAAG AGGCTTTTGC AGCTTCTGAT 
GTTAAAAACG CAGTGAAAGA CGAGGAGGAA AACAACGTGA CATTTTATTT GATCATCACT 
TTGGGCTCGG TTTCGGTGCT TTTCGTCATC AGCATCATCG TGTTGATTGT AATGCAGTGC 
TCCAAATCTA CAGACTATTC GTCCAAGTAT TTACAGGACA CAAATTATGA CGGGACTCTG 
TGTCACAGCA TCCAGTACAG ATCAGGAGAC AAACGCTACA TGTTAGTTGG ACCCAGAATG 
AGTATCGGCT CTACTATAGC ACCAGGCAGT AATAGGAATA CTCTAGTCAT ACCAGATCGC 
AGGAGGAGAG ACTCTGGAGA GCCTAAAGTT CCCAGTTCAG ACTGGAGATA TTCGGCGTCC 
CTCAGAGCAG GAATGCAAAG TTCTGTCCGT ATGGAGGAGT CCTCTGTGAT GCAGGGAGCT 
CAAGGAGTCC TGGTTCAGAA CTGGCCCACC GTTTCCAGCG CTCCCGATAA TGAGGGTGGA 
GAGGTGTCTC CACCTGTAGG CGCTGGAGTG GACAGCAACA GCTGGCATTT CCGATATGGG 
CCGGGTCCCG GAGGCCCTCC GCACCTGAAA CCCGGTGAAG TTCCTCCCGA AGCCTTCATC 
ATCCCTGGAT CTCCGGCCAT TATTTCCATC AGACAAGGAC AGGACGGTGA CGACAAGAGC 
GACTTTATTA CCTTTGGGAA AAAGGAGGAG GCCAAGAAGT TAAAGAAGAA AAAGAAGAAG 
GAGAAGAAGG ATAAGCGGGA GAAAGGGAAG GATGATGATG ATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Genomic organization and transcripts of the zebrafish Protocadherin genes.
Gene340(2)197-211(2004 Oct)
Tada MN,Senzaki K,Tai Y,Morishita H,Tanaka YZ,Murata Y,Ishii Y,Asakawa S,Shimizu N,Sugino H,Yagi T

Gene conversion and the evolution of protocadherin gene cluster diversity.
Genome research14(3)354-66(2004 Mar)
Noonan JP,Grimwood J,Schmutz J,Dickson M,Myers RM

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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pcdh2aa3 cDNA ORF clone, Danio rerio(zebrafish)

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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