pcdh2ab6 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	pcdh2ab6
Entrez Gene ID	493592
Full Name	protocadherin 2 alpha b 6
Synonyms	zCNRv6
General protein information	Preferred Names protocadherin 2 alpha b 6 Names protocadherin 2 alpha b 6 cadherin-related neuronal receptor variable 6
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001009593.1	NP_001009593.1	protocadherin 2 alpha b 6 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA8	NP_061734.1
Danio rerio (zebrafish)	pcdh2aa1	NP_001009585.1
Danio rerio (zebrafish)	LOC101883818	XP_005157169.1
Danio rerio (zebrafish)	LOC100334403	XP_003199829.1
Danio rerio (zebrafish)	LOC100538109	XP_003199825.1
Danio rerio (zebrafish)	LOC100538188	XP_003199826.1
Danio rerio (zebrafish)	LOC100538273	XP_003199828.2
Danio rerio (zebrafish)	LOC100536131	XP_003199861.2
Danio rerio (zebrafish)	LOC100534663	XP_003199830.2
Danio rerio (zebrafish)	LOC100535010	XP_003199838.2
Danio rerio (zebrafish)	pcdh1a3	NP_001019268.1
Danio rerio (zebrafish)	pcdh1a6	NP_001019272.1
Danio rerio (zebrafish)	pcdh2ab8	NP_001009595.1
Danio rerio (zebrafish)	pcdh2ab9	NP_001009596.1
Danio rerio (zebrafish)	pcdh2ab3	NP_001008484.1
Danio rerio (zebrafish)	LOC100334341	XP_002664325.1
Danio rerio (zebrafish)	LOC100534710	XP_003199831.2
Danio rerio (zebrafish)	LOC100534756	XP_003199832.1
Canis lupus familiaris (dog)	PCDHA5	XP_005617959.1
Danio rerio (zebrafish)	pcdh2ab6	NP_001009593.1
Danio rerio (zebrafish)	pcdh2ab7	NP_001009594.1
Pan troglodytes (chimpanzee)	PCDHA8	NP_001076058.1
Danio rerio (zebrafish)	LOC100332681	XP_002663584.3
Danio rerio (zebrafish)	LOC100334586	XP_002664327.2
Danio rerio (zebrafish)	LOC100535684	XP_003199851.1
Danio rerio (zebrafish)	pcdh2ab5	NP_001008483.1
Danio rerio (zebrafish)	pcdh1a4	NP_001019270.1
Danio rerio (zebrafish)	pcdh2ab2	NP_001009592.1
Danio rerio (zebrafish)	pcdh2ab1	NP_001009588.1
Danio rerio (zebrafish)	pcdh2ab10	NP_001009589.1
Danio rerio (zebrafish)	pcdh2aa15	NP_001009586.1
Danio rerio (zebrafish)	pcdh2aa3	NP_001009587.1
Danio rerio (zebrafish)	LOC101882761	XP_005157163.1
Danio rerio (zebrafish)	LOC101882821	XP_005157164.1
Danio rerio (zebrafish)	LOC101884534	XP_005157172.1
Danio rerio (zebrafish)	LOC100334150	XP_003199824.1
Danio rerio (zebrafish)	LOC100535137	XP_003199839.1
Danio rerio (zebrafish)	LOC100536035	XP_003199859.2
Bos taurus (cattle)	LOC539857	XP_005209576.1
Rattus norvegicus (Norway rat)	Pcdha8	NP_446394.1
Danio rerio (zebrafish)	pcdh2ab12	NP_001009591.1
Danio rerio (zebrafish)	pcdh2ab11	XP_005157162.1
Danio rerio (zebrafish)	LOC101884096	XP_005157170.1
Danio rerio (zebrafish)	LOC100150033	XP_003199834.1
Danio rerio (zebrafish)	LOC100535997	XP_003199858.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bayés À, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 03)

Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster.
Tan YP, Li S, Jiang XJ, Loh W, Foo YK, Loh CB, Xu Q, Yuen WH, Jones M, Fu J, Venkatesh B, Yu WP
Nucleic acids research38(15)4985-97(2010 Aug)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Genomic organization and transcripts of the zebrafish Protocadherin genes.
Tada MN, Senzaki K, Tai Y, Morishita H, Tanaka YZ, Murata Y, Ishii Y, Asakawa S, Shimizu N, Sugino H, Yagi T
Gene340(2)197-211(2004 Oct)

Gene conversion and the evolution of protocadherin gene cluster diversity.
Noonan JP, Grimwood J, Schmutz J, Dickson M, Myers RM
Genome research14(3)354-66(2004 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pcdh2ab6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pcdh2ab6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa05060	NM_001009593.1 Latest version!	Danio rerio protocadherin 2 alpha b 6 (pcdh2ab6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

pcdh2ab6 ( NM_001009593.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001009593.1 Danio rerio protocadherin 2 alpha b 6 (pcdh2ab6), mRNA.

Price & Availability↑

CloneID	ODa05060
Clone ID Related Accession (Same CDS sequence)	NM_001009593.1
Accession Version	NM_001009593.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2820bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1548432000000
Organism	Danio rerio(zebrafish)
Product	protocadherin 2 alpha b 6 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB075934.1. ##Evidence-Data-START## Transcript exon combination :: AB075934.1 [ECO:0000332] ##Evidence-Data-END##

ATGGCGAATT CTGCAAGGGA ACGAAATAAA TTATGGATAT ATATCATTGT TTTGAATATC 
CTTCCGCGGA TTTCCTCTGG GCAGATTGCG TTTTCTGTGT CGGAAGAGGC CAGTCCGGGG 
ACTACAGTCG GAAATATAGT CAAAGAATTA AACCTTAATT TGCAAGAACT GGAACATCGG 
GGATTTCAGA TCGTTGGACC CAACAAAAGG TATTTCGATG TAAATATGAA GACAGGAATA 
CTTCAGGTTA AAGACAAACT AGACAGAGAG GAGATATGCG GACAAAGCTT AAAATGTGCG 
TTAGAGCTGG AGGCCATTGT TAATTCGCCA CTGAATATGT ACAGATTTGA AGTGAATGTT 
TTGGATGTAA ACGACAATTC TCCCACATTT CCTTCCTCGA GGTTACAATT AAATGTATCC 
GAGGCGGCAT TTATAGGGGA AAGGTATGCA TTACCAAACG CATTTGACGC AGATGTGGGC 
ATTAATTCGG TGAAGAGCTA CAAGCTTAGT GCAAATGAGC ATTTCTCTCT GGATGCACAG 
AGCGGAGGAG AACAGAGTGT GTCTGCTGAA TTAGTGCTGC AGAAAGCTTT AGATCGAGAA 
AAACAGCCGG TGATCCGGCT CACACTGACC GCTGTAGACG GAGGAAAACC TCCAAGATCA 
GGAACAGTAC ATATAATTGT TAATGTTATA GATGTGAACG ATAACATTCC TGTTTTCACA 
AAATCACTGT ACAAAGCTCG AATTTTAGAA AACGCACCCG TTGAATTCTC CGTTATCACT 
GTAAACGCCA GAGATGCAGA CGCGGGGCTA AACGGAGAGA TAGAATACTC ATTCATTAAA 
CATGGCATCG ACAAAAATAT TGAATCGTTT GCAATTAACA AAGAAACTGG TGAAATAACT 
GTCATGGGTA AATTGGATCA CGAGTCAAAT AATGCTATTG AAATACGCGT GCAAGCGAGA 
GATAAAGGCT CGACTCCAAG AGTAGCTCAT TGCAAAGTAT TAGTAGAAAT AATGGACGTT 
AATGATAATA TACCAGAAAT ATCTGTAACG TCTCTTATTA ATGTTGTGAA GGAAGGGTCA 
CCAAAGGGAA CAATGGTAGG GCTGATTACT GTAAAAGATG ATGATTCTGG AGAAAATGGA 
TCAGTAAAAT TAAAAATACT CGACTCCCTT CCGTTTGCAT TACAGAACAC CTATAAAAAT 
AAATATTCAC TCGTTGTAGA TGGACCTCTA GACAGAGAGA GCGCGTCTGA GTATAACGTG 
ACAATCAGCG CTGCTGATGA AGGGTCTCCG CCTCTCTCTA GTACCAGTGT CATTGCTGTT 
CACGTTTCTG ATGTCAATGA CAACGCGCCG CGCTTTCCAG AGCCCGTCAT TAATGTGTAT 
GTGAAAGAGA ACAGTCAGAT TGGAGCTGTT CTTCATACAG TATCTGCTGT TGATCCTGAT 
GTAGGTGATA ATGCCAGAAT AACATATTCT TTACTAGAAA GCTCTAAAAG CGGCCCGGTA 
ACATCCATGA TCAACATCAA CTCTGACACT GGAGATCTGC ACAGTTTACA GTCGTTTAAC 
TATGAGGAGA TCAAAACATT TGAGTTTAAA GTTCAGGCCA CAGACTCTGG TGTTCCTCCG 
CTCAGCAGTA ACGTGACTGT AAATGTGTTT GTCCTGGATG AGAATGACAA CAGTCCCGCG 
ATTCTCGCGC CCTATTCCGA GCTCGGTTCC GTTAACACCG AGAACATTCC CTATTCTGCT 
GAGGCGGGCT ACTTTGTGGC CAAGATCAGG GCTGTAGATG CAGATTCCGG TTACAACGCG 
CTGTTGTCCT ACCACATCTC TGAGCCCAAA GGAAACAATC TGTTCCGAAT CGGAACCAGC 
AGCGGGGAGA TCAGGACTAA GAGGAGAATG AGTGACAATG ACCTGAAAAC TCACCCGCTG 
GTCATTTTGG TTTGTGATAA CGGAGAGCCC TCACTGTCAG CGACTGTGTC TATTGATGCT 
GTGGTTGTTG AAAGCGGAGG TGACGTCAAG ACTCCATTCA GACATGCGCC GGTAAAGGAG 
GAGAGTTTCT CGGATTTAAA TCTGTATTTG CTGATCGCCA TTGTGAGTGT GTCCGTCATC 
TTTTTACTGA GCCTCATCAG TTTGATAGCT GTGAAATGCC ACAGGACAGA CAGCAGTTTG 
GGCAGGTACA GCGCCCCGAT GATCACCACA CACCCTGACG GGAGCTGGTC TTACTCCAAA 
TCTACTCAGC AGTATGACGT GTGTTTTAGC TCAGACACAC TGAAGAGTGA CGTAGTGGTT 
TTCCCCGCGC CATTTCCGCC TGCAGATGCA GAACTGATCA GTATTAATGG AGGAGACACG 
TTCACCAGAA CACAAACACT GCCTAATAAA GAGAAGCCTA AAGTTCCCAG TTCAGACTGG 
AGATATTCGG CGTCCCTCAG AGCAGGAATG CAAAGTTCTG TCCGTATGGA GGAGTCCTCT 
GTGATGCAGG GAGCTCAAGG AGTCCTGGTT CAGAACTGGC CCACCGTTTC CAGCGCTCCC 
GATAATGAGG GTGGAGAGGT GTCTCCACCT GTAGGCGCTG GAGTGGACAG CAACAGCTGG 
CATTTCCGAT ATGGGCCGGG TCCCGGAGGC CCTCCGCACC TGAAACCCGG TGAAGTTCCT 
CCCGAAGCCT TCATCATCCC TGGATCTCCG GCCATTATTT CCATCAGACA AGGACAGGAC 
GGTGACGACA AGAGCGACTT TATTACCTTT GGGAAAAAGG AGGAGGCCAA GAAGTTAAAG 
AAGAAAAAGA AGAAGGAGAA GAAGGATAAG CGGGAGAAAG GGAAGGATGA TGATGATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001009593.1
CDS	1..2820
Translation	MANSARERNKLWIYIIVLNILPRISSGQIAFSVSEEASPGTTVGNIVKELNLNLQELEHRGFQIVGPNKRYFDVNMKTGILQVKDKLDREEICGQSLKCALELEAIVNSPLNMYRFEVNVLDVNDNSPTFPSSRLQLNVSEAAFIGERYALPNAFDADVGINSVKSYKLSANEHFSLDAQSGGEQSVSAELVLQKALDREKQPVIRLTLTAVDGGKPPRSGTVHIIVNVIDVNDNIPVFTKSLYKARILENAPVEFSVITVNARDADAGLNGEIEYSFIKHGIDKNIESFAINKETGEITVMGKLDHESNNAIEIRVQARDKGSTPRVAHCKVLVEIMDVNDNIPEISVTSLINVVKEGSPKGTMVGLITVKDDDSGENGSVKLKILDSLPFALQNTYKNKYSLVVDGPLDRESASEYNVTISAADEGSPPLSSTSVIAVHVSDVNDNAPRFPEPVINVYVKENSQIGAVLHTVSAVDPDVGDNARITYSLLESSKSGPVTSMININSDTGDLHSLQSFNYEEIKTFEFKVQATDSGVPPLSSNVTVNVFVLDENDNSPAILAPYSELGSVNTENIPYSAEAGYFVAKIRAVDADSGYNALLSYHISEPKGNNLFRIGTSSGEIRTKRRMSDNDLKTHPLVILVCDNGEPSLSATVSIDAVVVESGGDVKTPFRHAPVKEESFSDLNLYLLIAIVSVSVIFLLSLISLIAVKCHRTDSSLGRYSAPMITTHPDGSWSYSKSTQQYDVCFSSDTLKSDVVVFPAPFPPADAELISINGGDTFTRTQTLPNKEKPKVPSSDWRYSASLRAGMQSSVRMEESSVMQGAQGVLVQNWPTVSSAPDNEGGEVSPPVGAGVDSNSWHFRYGPGPGGPPHLKPGEVPPEAFIIPGSPAIISIRQGQDGDDKSDFITFGKKEEAKKLKKKKKKEKKDKREKGKDDDD

Target ORF information:

RefSeq Version	NM_001009593.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio protocadherin 2 alpha b 6 (pcdh2ab6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001009593.1

ORF Insert Sequence:

ATGGCGAATT CTGCAAGGGA ACGAAATAAA TTATGGATAT ATATCATTGT TTTGAATATC 
CTTCCGCGGA TTTCCTCTGG GCAGATTGCG TTTTCTGTGT CGGAAGAGGC CAGTCCGGGG 
ACTACAGTCG GAAATATAGT CAAAGAATTA AACCTTAATT TGCAAGAACT GGAACATCGG 
GGATTTCAGA TCGTTGGACC CAACAAAAGG TATTTCGATG TAAATATGAA GACAGGAATA 
CTTCAGGTTA AAGACAAACT AGACAGAGAG GAGATATGCG GACAAAGCTT AAAATGTGCG 
TTAGAGCTGG AGGCCATTGT TAATTCGCCA CTGAATATGT ACAGATTTGA AGTGAATGTT 
TTGGATGTAA ACGACAATTC TCCCACATTT CCTTCCTCGA GGTTACAATT AAATGTATCC 
GAGGCGGCAT TTATAGGGGA AAGGTATGCA TTACCAAACG CATTTGACGC AGATGTGGGC 
ATTAATTCGG TGAAGAGCTA CAAGCTTAGT GCAAATGAGC ATTTCTCTCT GGATGCACAG 
AGCGGAGGAG AACAGAGTGT GTCTGCTGAA TTAGTGCTGC AGAAAGCTTT AGATCGAGAA 
AAACAGCCGG TGATCCGGCT CACACTGACC GCTGTAGACG GAGGAAAACC TCCAAGATCA 
GGAACAGTAC ATATAATTGT TAATGTTATA GATGTGAACG ATAACATTCC TGTTTTCACA 
AAATCACTGT ACAAAGCTCG AATTTTAGAA AACGCACCCG TTGAATTCTC CGTTATCACT 
GTAAACGCCA GAGATGCAGA CGCGGGGCTA AACGGAGAGA TAGAATACTC ATTCATTAAA 
CATGGCATCG ACAAAAATAT TGAATCGTTT GCAATTAACA AAGAAACTGG TGAAATAACT 
GTCATGGGTA AATTGGATCA CGAGTCAAAT AATGCTATTG AAATACGCGT GCAAGCGAGA 
GATAAAGGCT CGACTCCAAG AGTAGCTCAT TGCAAAGTAT TAGTAGAAAT AATGGACGTT 
AATGATAATA TACCAGAAAT ATCTGTAACG TCTCTTATTA ATGTTGTGAA GGAAGGGTCA 
CCAAAGGGAA CAATGGTAGG GCTGATTACT GTAAAAGATG ATGATTCTGG AGAAAATGGA 
TCAGTAAAAT TAAAAATACT CGACTCCCTT CCGTTTGCAT TACAGAACAC CTATAAAAAT 
AAATATTCAC TCGTTGTAGA TGGACCTCTA GACAGAGAGA GCGCGTCTGA GTATAACGTG 
ACAATCAGCG CTGCTGATGA AGGGTCTCCG CCTCTCTCTA GTACCAGTGT CATTGCTGTT 
CACGTTTCTG ATGTCAATGA CAACGCGCCG CGCTTTCCAG AGCCCGTCAT TAATGTGTAT 
GTGAAAGAGA ACAGTCAGAT TGGAGCTGTT CTTCATACAG TATCTGCTGT TGATCCTGAT 
GTAGGTGATA ATGCCAGAAT AACATATTCT TTACTAGAAA GCTCTAAAAG CGGCCCGGTA 
ACATCCATGA TCAACATCAA CTCTGACACT GGAGATCTGC ACAGTTTACA GTCGTTTAAC 
TATGAGGAGA TCAAAACATT TGAGTTTAAA GTTCAGGCCA CAGACTCTGG TGTTCCTCCG 
CTCAGCAGTA ACGTGACTGT AAATGTGTTT GTCCTGGATG AGAATGACAA CAGTCCCGCG 
ATTCTCGCGC CCTATTCCGA GCTCGGTTCC GTTAACACCG AGAACATTCC CTATTCTGCT 
GAGGCGGGCT ACTTTGTGGC CAAGATCAGG GCTGTAGATG CAGATTCCGG TTACAACGCG 
CTGTTGTCCT ACCACATCTC TGAGCCCAAA GGAAACAATC TGTTCCGAAT CGGAACCAGC 
AGCGGGGAGA TCAGGACTAA GAGGAGAATG AGTGACAATG ACCTGAAAAC TCACCCGCTG 
GTCATTTTGG TTTGTGATAA CGGAGAGCCC TCACTGTCAG CGACTGTGTC TATTGATGCT 
GTGGTTGTTG AAAGCGGAGG TGACGTCAAG ACTCCATTCA GACATGCGCC GGTAAAGGAG 
GAGAGTTTCT CGGATTTAAA TCTGTATTTG CTGATCGCCA TTGTGAGTGT GTCCGTCATC 
TTTTTACTGA GCCTCATCAG TTTGATAGCT GTGAAATGCC ACAGGACAGA CAGCAGTTTG 
GGCAGGTACA GCGCCCCGAT GATCACCACA CACCCTGACG GGAGCTGGTC TTACTCCAAA 
TCTACTCAGC AGTATGACGT GTGTTTTAGC TCAGACACAC TGAAGAGTGA CGTAGTGGTT 
TTCCCCGCGC CATTTCCGCC TGCAGATGCA GAACTGATCA GTATTAATGG AGGAGACACG 
TTCACCAGAA CACAAACACT GCCTAATAAA GAGAAGCCTA AAGTTCCCAG TTCAGACTGG 
AGATATTCGG CGTCCCTCAG AGCAGGAATG CAAAGTTCTG TCCGTATGGA GGAGTCCTCT 
GTGATGCAGG GAGCTCAAGG AGTCCTGGTT CAGAACTGGC CCACCGTTTC CAGCGCTCCC 
GATAATGAGG GTGGAGAGGT GTCTCCACCT GTAGGCGCTG GAGTGGACAG CAACAGCTGG 
CATTTCCGAT ATGGGCCGGG TCCCGGAGGC CCTCCGCACC TGAAACCCGG TGAAGTTCCT 
CCCGAAGCCT TCATCATCCC TGGATCTCCG GCCATTATTT CCATCAGACA AGGACAGGAC 
GGTGACGACA AGAGCGACTT TATTACCTTT GGGAAAAAGG AGGAGGCCAA GAAGTTAAAG 
AAGAAAAAGA AGAAGGAGAA GAAGGATAAG CGGGAGAAAG GGAAGGATGA TGATGATTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 03)
Bayés À,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster.
Nucleic acids research38(15)4985-97(2010 Aug)
Tan YP,Li S,Jiang XJ,Loh W,Foo YK,Loh CB,Xu Q,Yuen WH,Jones M,Fu J,Venkatesh B,Yu WP

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Genomic organization and transcripts of the zebrafish Protocadherin genes.
Gene340(2)197-211(2004 Oct)
Tada MN,Senzaki K,Tai Y,Morishita H,Tanaka YZ,Murata Y,Ishii Y,Asakawa S,Shimizu N,Sugino H,Yagi T

Gene conversion and the evolution of protocadherin gene cluster diversity.
Genome research14(3)354-66(2004 Mar)
Noonan JP,Grimwood J,Schmutz J,Dickson M,Myers RM

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pcdh2ab6 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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