RT1-CE16 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	RT1-CE16
Entrez Gene ID	414819
Full Name	RT1 class I, locus CE16
General protein information	Preferred Names RT1 class I, locus CE16 Names RT1 class I, locus CE16 MHC class Ib alpha chain RT1 class I, CE16
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001008839.1	NP_001008839.1	RT1 class I, locus CE16 precursor

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Gm8909	NP_001074501.2
Mus musculus (house mouse)	H2-Bl	NP_032225.2
Mus musculus (house mouse)	H2-Q2	NP_034522.2
Rattus norvegicus (Norway rat)	RT1-A1	NP_001008827.1
Rattus norvegicus (Norway rat)	RT1-CE2	NP_001008840.1
Rattus norvegicus (Norway rat)	RT1-CE5	NP_001008843.1
Rattus norvegicus (Norway rat)	RT1-A2	NP_001008829.1
Gallus gallus (chicken)	MICA	XP_415354.4
Gallus gallus (chicken)	MR1	XP_004945738.1
Gallus gallus (chicken)	LOC417083	XP_003642294.2
Danio rerio (zebrafish)	zgc:136614	NP_001077014.1
Gallus gallus (chicken)	LOC100858733	XP_003643847.2
Gallus gallus (chicken)	LOC100858581	XP_003643753.2
Rattus norvegicus (Norway rat)	LOC100364500	XP_006255953.1
Danio rerio (zebrafish)	LOC100536229	XP_003201722.1
Macaca mulatta (Rhesus monkey)	MAMU-A3	NP_001165309.1
Mus musculus (house mouse)	H2-D1	NP_034510.3
Mus musculus (house mouse)	Gm10499	XP_006525296.1
Mus musculus (house mouse)	H2-Q4	NP_001137161.1
Mus musculus (house mouse)	H2-Q7	NP_034524.3
Rattus norvegicus (Norway rat)	RT1-CE7	NP_001008845.1
Rattus norvegicus (Norway rat)	RT1-CE1	NP_001008832.1
Rattus norvegicus (Norway rat)	RT1-CE10	NP_001008833.1
Gallus gallus (chicken)	BF2	NP_001026509.1
Gallus gallus (chicken)	LOC769716	XP_001233005.3
Gallus gallus (chicken)	YF6	XP_003643784.1
Danio rerio (zebrafish)	LOC563036	XP_001919291.4
Gallus gallus (chicken)	LOC101752075	XP_004950216.1
Gallus gallus (chicken)	LOC100859374	XP_003643261.1
Gallus gallus (chicken)	LOC100859408	XP_003643262.1
Gallus gallus (chicken)	LOC100859100	XP_003642292.2
Mus musculus (house mouse)	H2-Q1	NP_034520.2
Rattus norvegicus (Norway rat)	RT1-CE16	NP_001008839.1
Rattus norvegicus (Norway rat)	RT1-CE3	NP_001008841.1
Gallus gallus (chicken)	BF1	XP_004945708.1
Gallus gallus (chicken)	LOC417058	XP_004950006.1
Gallus gallus (chicken)	LOC417057	XP_415345.4
Gallus gallus (chicken)	LOC100859282	XP_003642295.2
Mus musculus (house mouse)	H2-Q10	NP_034521.1
Gallus gallus (chicken)	LOC430600	XP_428156.3
Danio rerio (zebrafish)	mhc1zba	NP_001103588.1
Gallus gallus (chicken)	LOC100859807	XP_003643267.1
Gallus gallus (chicken)	LOC100859881	XP_003643268.1
Gallus gallus (chicken)	LOC100859012	XP_003643257.1
Mus musculus (house mouse)	H2-Q6	NP_997531.1
Rattus norvegicus (Norway rat)	RT1-CE13	NP_001008836.1
Rattus norvegicus (Norway rat)	RT1-CE4	NP_001008842.1
Gallus gallus (chicken)	LOC768350	NP_001171648.1
Gallus gallus (chicken)	LOC417080	XP_003643749.2
Danio rerio (zebrafish)	si:ch211-287j19.6	NP_001039028.1
Danio rerio (zebrafish)	LOC556263	XP_003198042.1
Danio rerio (zebrafish)	mhc1zja	NP_001103188.1
Homo sapiens (human)	HLA-A	NP_002107.3
Pan troglodytes (chimpanzee)	PATR-A	NP_001009058.2
Mus musculus (house mouse)	H2-K1	NP_001001892.2
Gallus gallus (chicken)	LOC100857553	XP_003643732.2
Gallus gallus (chicken)	LOC100858943	XP_003643255.2

Gene Ontology
Bibliography

Related articles in PubMed

Identification of MHC Class Ib Ligands for Stimulatory and Inhibitory Ly49 Receptors and Induction of Potent NK Cell Alloresponses in Rats.
Dai KZ, Ryan JC, Naper C, Vaage JT
Journal of immunology (Baltimore, Md. : 1950)200(8)2847-2859(2018 04)

Nucleotide sequences of three distinct cDNA clones coding for the rat class I heavy chain RT1n antigen.
Wang M, Stepkowski SM, Tian L, Langowski JL, Hebert JS, Kloc M, Yu J, Kahan BD
Immunogenetics45(1)73-5(1996)

Characterization of two class I major histocompatibility rat cDNA clones, one of which contains a premature termination codon.
Kastern W
Gene34(2-3)227-33(1985)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following RT1-CE16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the RT1-CE16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa09742	NM_001008839.1 Latest version!	Rattus norvegicus RT1 class I, locus CE16 (RT1-CE16), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

RT1-CE16 ( NM_001008839.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001008839.1 Rattus norvegicus RT1 class I, locus CE16 (RT1-CE16), mRNA.

Price & Availability↑

CloneID	ORa09742
Clone ID Related Accession (Same CDS sequence)	NM_001008839.1
Accession Version	NM_001008839.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1113bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1527264000000
Organism	Rattus norvegicus(Norway rat)
Product	RT1 class I, locus CE16 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX883047.1. On Apr 19, 2005 this sequence version replaced XM_579234.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02642868, SAMN02642910 [ECO:0000348] ##Evidence-Data-END##

ATGGGGGCGA TGGCACCGCG CACGCTGCTC CTGCTGCTGG CGGCCGCCCT GGCCCCGACG 
CAGACTCGCG CGGGCTCACA CTCGCTGCGG TATTTCGTCA CCGCCATATC CGGGCCCGGC 
CTCGGGGAGC CCCGATTCAT GGAAGTCGGC TACGTGGACG GCACGGAGTT CGTGCGCTAC 
GACAGCGACG CAAAGAATCC GGGGATGGAG CCGCGGGCGA GGTGGATGGA GCGGGAGGGG 
CGGGAGTATT GGGAGCGGGA GACACGGAGA GTCAAGGAAA ACGAGCAGTT GTTCCGAGGG 
AACCTGAGGA CCCTGCTTGG CTACTACAAC CAGAGCGAGG GCGGCTCTCA CACCATCCAG 
TGGATGTCTG GCTGTGACGT GGGGTCGGAC GGGAGCCTCC TCCGCGGGTA TGATCAGTTC 
GCCTACGACG GCCGCGATTA CATCGTCCTG AACGAAGACC TGAAAACGTG GACGGCGGCG 
GACACGGCGG CACGGATCAC CCGGAACAAG TGGGATCGGG CTGGTGTTGC AGAGAGACAC 
AAGGCCTACC TGGAGGGCAA GTGCTTGGAG TCGCTCCTCA GATACCTGGA GCTCGGGAAG 
GAGACGCTGC TGCGCTCAGA TCCCCCAAAG GCACATGTGA CCCTTCACCC CAGACCTGAA 
GGTGATGTCA CCCTGAGGTG CTGGGCCCTG GGCTTCTACC CTGCTGGCAT CTCCCTGACC 
TGGCAGTTGA ATGGGGAGGA CCTGACCCAG GACATGGAGC TTGTGGAGAC CAGGCCTGCA 
GGGGATGGAA CCTTCCAAAA GTGGGCATCT GTGGTGGTGC CTCTTGGGAA GGAGCAGAAT 
TACACATGCC TTGTGGAGCA TGAGGGGCTG CCTGAGCCGC TTACCCAGAG ATGGGAGCCT 
TCTCCATCGA CCGACTCCAA CATGGAAACC TATGTCATTT ATGTCATCCT TGGAGCTGTG 
GCCATCATTG CAGCTGTGAT CATTGTAGCT GTGGTGGCTG TTGTGATGAA GAGGAGGAGA 
AACACAGGTG GAAAAGTAGG AGTCTACGCC CCTGCTCCAA GCAGGGACAG CTCTGAGAGC 
TCTGATGTGT CTCTCTCAGA TTGTAAAGCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001008839.1
CDS	1..1113
Translation	MGAMAPRTLLLLLAAALAPTQTRAGSHSLRYFVTAISGPGLGEPRFMEVGYVDGTEFVRYDSDAKNPGMEPRARWMEREGREYWERETRRVKENEQLFRGNLRTLLGYYNQSEGGSHTIQWMSGCDVGSDGSLLRGYDQFAYDGRDYIVLNEDLKTWTAADTAARITRNKWDRAGVAERHKAYLEGKCLESLLRYLELGKETLLRSDPPKAHVTLHPRPEGDVTLRCWALGFYPAGISLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCLVEHEGLPEPLTQRWEPSPSTDSNMETYVIYVILGAVAIIAAVIIVAVVAVVMKRRRNTGGKVGVYAPAPSRDSSESSDVSLSDCKA

Target ORF information:

RefSeq Version	NM_001008839.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus RT1 class I, locus CE16 (RT1-CE16), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001008839.1

ORF Insert Sequence:

ATGGGGGCGA TGGCACCGCG CACGCTGCTC CTGCTGCTGG CGGCCGCCCT GGCCCCGACG 
CAGACTCGCG CGGGCTCACA CTCGCTGCGG TATTTCGTCA CCGCCATATC CGGGCCCGGC 
CTCGGGGAGC CCCGATTCAT GGAAGTCGGC TACGTGGACG GCACGGAGTT CGTGCGCTAC 
GACAGCGACG CAAAGAATCC GGGGATGGAG CCGCGGGCGA GGTGGATGGA GCGGGAGGGG 
CGGGAGTATT GGGAGCGGGA GACACGGAGA GTCAAGGAAA ACGAGCAGTT GTTCCGAGGG 
AACCTGAGGA CCCTGCTTGG CTACTACAAC CAGAGCGAGG GCGGCTCTCA CACCATCCAG 
TGGATGTCTG GCTGTGACGT GGGGTCGGAC GGGAGCCTCC TCCGCGGGTA TGATCAGTTC 
GCCTACGACG GCCGCGATTA CATCGTCCTG AACGAAGACC TGAAAACGTG GACGGCGGCG 
GACACGGCGG CACGGATCAC CCGGAACAAG TGGGATCGGG CTGGTGTTGC AGAGAGACAC 
AAGGCCTACC TGGAGGGCAA GTGCTTGGAG TCGCTCCTCA GATACCTGGA GCTCGGGAAG 
GAGACGCTGC TGCGCTCAGA TCCCCCAAAG GCACATGTGA CCCTTCACCC CAGACCTGAA 
GGTGATGTCA CCCTGAGGTG CTGGGCCCTG GGCTTCTACC CTGCTGGCAT CTCCCTGACC 
TGGCAGTTGA ATGGGGAGGA CCTGACCCAG GACATGGAGC TTGTGGAGAC CAGGCCTGCA 
GGGGATGGAA CCTTCCAAAA GTGGGCATCT GTGGTGGTGC CTCTTGGGAA GGAGCAGAAT 
TACACATGCC TTGTGGAGCA TGAGGGGCTG CCTGAGCCGC TTACCCAGAG ATGGGAGCCT 
TCTCCATCGA CCGACTCCAA CATGGAAACC TATGTCATTT ATGTCATCCT TGGAGCTGTG 
GCCATCATTG CAGCTGTGAT CATTGTAGCT GTGGTGGCTG TTGTGATGAA GAGGAGGAGA 
AACACAGGTG GAAAAGTAGG AGTCTACGCC CCTGCTCCAA GCAGGGACAG CTCTGAGAGC 
TCTGATGTGT CTCTCTCAGA TTGTAAAGCA TGA