qkr54B cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	qkr54B
Entrez Gene ID	36966
Full Name	quaking related 54B
Synonyms	CG4816,Dmel\CG4816,QKR54B,SAM,SAM50,Sam50,p62GAP,qrk54B
General protein information	Preferred Names quaking related 54B Names CG4816 gene product from transcript CG4816-RE CG4816-PA CG4816-PB CG4816-PD CG4816-PE qkr54B-PA qkr54B-PB qkr54B-PD qkr54B-PE
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 2R Map Location: 54B16-54B16

mRNA and Protein(s)

mRNA	Protein	Name
NM_079048.4	NP_523772.1	quaking related 54B, isoform B
NM_166231.3	NP_725680.2	quaking related 54B, isoform D
NM_001274121.1	NP_001261050.1	quaking related 54B, isoform E
NM_166230.3	NP_725679.1	quaking related 54B, isoform A

Pathways from BioSystems

Homologies

Homo sapiens (human)	KHDRBS3	NP_006549.1
Macaca mulatta (Rhesus monkey)	LOC705288	XP_001093657.2
Rattus norvegicus (Norway rat)	Khdrbs3	NP_071585.1
Bos taurus (cattle)	KHDRBS3	NP_001076981.1
Drosophila melanogaster (fruit fly)	qkr58E-1	NP_523809.2
Canis lupus familiaris (dog)	KHDRBS3	XP_848348.2
Gallus gallus (chicken)	KHDRBS3	XP_001231272.1
Drosophila melanogaster (fruit fly)	qkr54B	NP_001261050.1
Danio rerio (zebrafish)	khdrbs3	XP_005172612.1
Xenopus tropicalis (tropical clawed frog)	khdrbs3	XP_002932263.1
Pan troglodytes (chimpanzee)	KHDRBS3	XP_519974.3
Mus musculus (house mouse)	Khdrbs3	NP_034288.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following qkr54B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the qkr54B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OFa13042	NM_166230.3 Latest version!	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant A, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
OFa13042	NM_166231.3 Latest version!	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant D, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
OFa13042	NM_079048.4 Latest version!	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant B, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
OFa10348	NM_001274121.1 Latest version!	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant E, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$307.30 $439.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

qkr54B ( NM_079048.4 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_523772.1 Drosophila melanogaster quaking related 54B (qkr54B), transcript variant B, mRNA.

Price & Availability↑

CloneID	OFa13042
Clone ID Related Accession (Same CDS sequence)	NM_079048.4 , NM_166231.3 , NM_166230.3
Accession Version	NM_079048.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	quaking related 54B, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_079048.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_523772.1
CDS	493..1779
Translation	MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGHHGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKSGYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPKQKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPPANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVGLGTGGASQSNAIGGSGLSSNHNRSHVNR

Target ORF information:

RefSeq Version	NM_079048.4
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant B, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079048.4

ORF Insert Sequence:

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

qkr54B ( NM_166231.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_725680.2 Drosophila melanogaster quaking related 54B (qkr54B), transcript variant D, mRNA.

Price & Availability↑

CloneID	OFa13042
Clone ID Related Accession (Same CDS sequence)	NM_079048.4 , NM_166231.3 , NM_166230.3
Accession Version	NM_166231.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	quaking related 54B, isoform D
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_166231.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_725680.2
CDS	128..1414
Translation	MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGHHGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKSGYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPKQKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPPANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVGLGTGGASQSNAIGGSGLSSNHNRSHVNR

Target ORF information:

RefSeq Version	NM_166231.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant D, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_166231.3

ORF Insert Sequence:

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

qkr54B ( NM_166230.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_725679.1 Drosophila melanogaster quaking related 54B (qkr54B), transcript variant A, mRNA.

Price & Availability↑

CloneID	OFa13042
Clone ID Related Accession (Same CDS sequence)	NM_079048.4 , NM_166231.3 , NM_166230.3
Accession Version	NM_166230.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	quaking related 54B, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_166230.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_725679.1
CDS	138..1424
Translation	MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGHHGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKSGYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPKQKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPPANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVGLGTGGASQSNAIGGSGLSSNHNRSHVNR

Target ORF information:

RefSeq Version	NM_166230.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant A, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_166230.3

ORF Insert Sequence:

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

qkr54B ( NM_001274121.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001261050.1 Drosophila melanogaster quaking related 54B (qkr54B), transcript variant E, mRNA.

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CloneID	OFa10348
Clone ID Related Accession (Same CDS sequence)	NM_001274121.1
Accession Version	NM_001274121.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1854bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	quaking related 54B, isoform E
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGAAAT TTGCTGGACC CTAGTAGTGC CAGCGGAGGT 
CGAGGTACAA ACCCGGCGGC AACCACCCAA AATTTGACCA TGAAATCCCA ACCCAATAGC 
AGCAACAACT TTTTGCCAAA TCACGGAGCA AGTGAGTGCC AAAATGGCAA GAACATAAAT 
CCCAACTACT ACTACAATTC CAACGGCAGT TCCAAGGTAA ATCAGCAACA ACTCCAACAG 
TCGCAACCAA ATCTCCCACC GCAGCTATCA GGCCACAACA ACAACAGCAG CAATGGCAGC 
CGGGCCAGCA ATATGATTAA CACCAGTAGC CACAATAATT GCAATAGCAA CTTTCACCCA 
GTCGGTGAGA AAAACTCCAA CGACGTTTCA TTTATATCCT CCTATCGACT TGGTCCAATG 
GATGGCCAAA AGAGTGCCAA CAGCAACAAT ATCAACAATC ACACATTAGG CAGTAAAAAC 
CACAGCAACA ACACCACCAC AACCGCTTCA GTGCCCAATA TGCTCTTAGT AAGACCTGCT 
AATCCTTCGC TACATATTGG CACATTTCCG TTCTTGCCCG TGCAGTTTTT CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001261050.1
CDS	128..1981
Translation	MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGHHGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKSGYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPKQKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPPANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVGLGTGGASQSNAIGGSGLSSNHNRSHVNR*NLLDPSSASGGRGTNPAATTQNLTMKSQPNSSNNFLPNHGASECQNGKNINPNYYYNSNGSSKVNQQQLQQSQPNLPPQLSGHNNNSSNGSRASNMINTSSHNNCNSNFHPVGEKNSNDVSFISSYRLGPMDGQKSANSNNINNHTLGSKNHSNNTTTTASVPNMLLVRPANPSLHIGTFPFLPVQFF

Target ORF information:

RefSeq Version	NM_001274121.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster quaking related 54B (qkr54B), transcript variant E, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001274121.1

ORF Insert Sequence:

ATGACCGAGA AGTACGACGG CAACGGTGAC TTTTCCGCTT TCAACGACGA TGACAACGAT 
TTTGGCGGCA AGCCTCGCAA GCCTGGTGGA TCTATTGGAG CACCAGGTGG CGCCCACAAT 
GGCGACGCTT CCGCCCACGA TCACGGCCAT CATGGAGGAG ATCCCGGCGG CAATGTCCAA 
ATAAACGAGA AAGCCAATGA GTACATACGC GATTGTATGG CGGAAAGAAA TCGAATGGAC 
AGGAAGTTTC CCATTGCCGA GAAACTGCTG GAAGGCGAGA TAGAAAAGGT CCAGACCACA 
GGAAGGATTC CTTCCAGAGA GCAAAAGTAT GCCGATATCT ATAGAGAGAA GCCGCTGCGG 
ATCTCGCAAC GTGTTTTAGT TCCCATTAGA GAACATCCCA AGTTCAACTT CGTTGGAAAA 
CTGCTGGGGC CCAAGGGCAA CTCCCTTCGC CGCCTTCAGG AGGAGACCCT TTGCAAGATG 
ACCGTCCTGG GCCGCAACTC TATGCGCGAT CGAGTCAAAG AAGAGGAATT GCGCAGCTCC 
AAGGATCCCA AGTACGCTCA CCTCAACAGC GATCTGCATG TTGAGATATC GACAATAGCG 
CCGCCCGCAG AAGCCTACGC CCGAATCGCC TACGCCATGG CCGAGCTGAG AAAGTATTTG 
ATCCCAGACA GTAACGACAT TATCCGACAG GAGCAGCTGC GCGAGCTGAT GGACAGCACT 
AGCCTCAATG ACAACGATAA TGCCAAGAGT GGCTATAAGA AGACGTCTCA CATGCAGGGA 
GGCAACAATG TCTTGGGTGG CGGCTCAATC AACCCGATTG GAGGGGTCAA GAACACGCCG 
CATCACAGCT ATAGGAGCTC ACAGCCGTCA TCTTTTAGTA AAAATGTTCT GGCTCCGAAG 
CAGAAAGTGA TGTCCATATT GGAAAAAGCC AGGACGGCCA TGGACGAAAC CTATGGTCGG 
GGCTATGACG ACGGACTTGG TTATGATCCC CACCAGTCGT ACGATAGCTA CTCCTATGGC 
ACTCATGGAC ATGGACCCCA TGGACCGCCA GCTAACATTC TGGGCGGAGT GGGCGGCATC 
AGCGGTGGCG GTGGTCGGGG TGGGCACTAC GAAAGCTCCG ACTACGAGCC GGATTATGGA 
AGACGAGAAT ACTATCAGCA TTCACCCGGC TATTCTGCTG GCGGCGGCGG AGGTGTAGGT 
CTGGGCACTG GCGGCGCTTC TCAATCAAAT GCCATCGGCG GCTCTGGTCT CAGTTCCAAT 
CACAATCGCA GCCATGTTAA CAGGTGAAAT TTGCTGGACC CTAGTAGTGC CAGCGGAGGT 
CGAGGTACAA ACCCGGCGGC AACCACCCAA AATTTGACCA TGAAATCCCA ACCCAATAGC 
AGCAACAACT TTTTGCCAAA TCACGGAGCA AGTGAGTGCC AAAATGGCAA GAACATAAAT 
CCCAACTACT ACTACAATTC CAACGGCAGT TCCAAGGTAA ATCAGCAACA ACTCCAACAG 
TCGCAACCAA ATCTCCCACC GCAGCTATCA GGCCACAACA ACAACAGCAG CAATGGCAGC 
CGGGCCAGCA ATATGATTAA CACCAGTAGC CACAATAATT GCAATAGCAA CTTTCACCCA 
GTCGGTGAGA AAAACTCCAA CGACGTTTCA TTTATATCCT CCTATCGACT TGGTCCAATG 
GATGGCCAAA AGAGTGCCAA CAGCAACAAT ATCAACAATC ACACATTAGG CAGTAAAAAC 
CACAGCAACA ACACCACCAC AACCGCTTCA GTGCCCAATA TGCTCTTAGT AAGACCTGCT 
AATCCTTCGC TACATATTGG CACATTTCCG TTCTTGCCCG TGCAGTTTTT CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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qkr54B cDNA ORF clone, Drosophila melanogaster(fruit fly)

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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