Bap60 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	Bap60
Entrez Gene ID	32268
Full Name	Brahma associated protein 60kD
Synonyms	BAF60,BAP60,BAPp60,CG4303,Dmel\CG4303,bap60,i127,i133
General protein information	Preferred Names Brahma associated protein 60kD Names CG4303 gene product from transcript CG4303-RA BRM-associated protein 60 Bap60-PA CG4303-PA brahma associated protein 60 kD brahma associated protein 60 kDa brahma associated protein 60kD
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: X Map Location: 11E1-11E1

mRNA and Protein(s)

mRNA	Protein	Name
NM_078588.4	NP_511143.2	brahma associated protein 60kD

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP005336	XP_315349.3
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000923	XP_309104.5
Rattus norvegicus (Norway rat)	Smarcd1	NP_001102222.1
Gallus gallus (chicken)	SMARCD1	XP_424488.3
Drosophila melanogaster (fruit fly)	Bap60	NP_511143.2
Arabidopsis thaliana (thale cress)	CHC1	NP_196921.1
Arabidopsis thaliana (thale cress)	AT3G01890	NP_566154.2
Xenopus tropicalis (tropical clawed frog)	smarcd1	NP_001004862.1
Homo sapiens (human)	SMARCD1	NP_003067.3
Canis lupus familiaris (dog)	SMARCD1	XP_543674.3
Bos taurus (cattle)	SMARCD1	NP_001033648.1
Caenorhabditis elegans (roundworm)	swsn-2.2	NP_491329.2
Oryza sativa (rice)	Os04g0382100	NP_001052605.1
Pan troglodytes (chimpanzee)	SMARCD1	XP_509054.3
Mus musculus (house mouse)	Smarcd1	NP_114030.2
Macaca mulatta (Rhesus monkey)	LOC712130	XP_001111275.2
Danio rerio (zebrafish)	smarcd1	NP_938172.1
Caenorhabditis elegans (roundworm)	swsn-2.1	NP_499250.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Bap60 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Bap60 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa01464	NM_078588.4 Latest version!	Drosophila melanogaster brahma associated protein 60kD (Bap60), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$307.30 $439.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Bap60 ( NM_078588.4 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_511143.2 Drosophila melanogaster brahma associated protein 60kD (Bap60), mRNA.

Price & Availability↑

CloneID	OFa01464
Clone ID Related Accession (Same CDS sequence)	NM_078588.4
Accession Version	NM_078588.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	brahma associated protein 60kD
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_078588.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGTCGCAAC GCTTTGCACC TGGCCAAGCG CCGGTGCAGT CGCGTTATCA GCCACCACCA 
CCGGCGCCCG GCATGCGTCC CTATCCGCCG CCAGGCGCCT CTTTTCCACC GCGCGGGTTT 
CCCCTGCATC CGAACACTAC TCAACCTGTT CCCGGCACGG CGAACGTGGC CGGGGTACCG 
GGAGTTCCTG GAGTACCCGG CGTACCGGGA CCATCGCTAC TGCAGCGCGC CGCCCAACAG 
CCGGGCTTTC AGAGCAGCCT TCGCGGTACT GGAGCCGGAG GTGGCGGTGT TGGATCCGGC 
GGAGGCAGCA AGAGGTCAAA TGAATCCCGC AGTTTGGGTG GCGGTGGTAG CAAAAGTGAT 
TTTGCGACGG CCAAAAAGAA AAAGAAGCTG GCCGAAAAGA TACTGCCGCA GAAGGTGCGG 
GATCTGGTGC CCGAATCGCA AGCGTACATG GATCTGCTGA CGTTTGAGCG AAAACTGGAT 
GCCACCATAA TGCGCAAACG TCTGGACATC CAGGAGGCCC TCAAGCGCCC CATGAAGCAG 
AAGCGCAAGC TGCGCATCTT CATCTCGAAC ACATTCTATC CCAGCAAGGA GCCCACAAAT 
GATGGCGAGG AGGGCGCCGT TGCCTCTTGG GAATTGCGGG TGGAGGGTCG CCTGTTAGAG 
GATGGCAAGG GCGATCCCAA TACAAAGATC AAACGCAAGT TTTCGTCGTT TTTCAAGTCG 
CTGGTTATCG AGCTGGATAA GGAACTGTAC GGTCCGGACA ACCATCTGGT CGAGTGGCAT 
CGCACTCACA CCACCCAGGA GACGGACGGG TTCCAGGTGA AGCGGCCGGG CGATCGCAAT 
GTGCGCTGCA CCATCCTCCT GCTGCTTGAC TACCAGCCGC TGCAGTTCAA GCTGGACCCG 
CGACTCGCCA GGTTGCTGGG CGTACACACA CAGACCAGGC CGGTGATCAT ATCCGCCCTG 
TGGCAGTACA TCAAGACGCA CAAGCTACAG GATGCCCACG AGCGGGAGTA CATCAATTGC 
GACAAGTATC TGGAGCAGAT ATTCAGTTGC CAGCGGATGA AGTTTGCCGA GATACCGCAA 
CGCCTCAATC CGCTGCTGCA TCCGCCCGAT CCGATTGTGA TCAATCATTT CATTGAGAGC 
GGTGCAGAGA ACAAGCAGAC TGCCTGCTAC GACATCGATG TGGAGGTGGA TGATACGCTC 
AAAAACCAGA TGAACAGCTT CCTGATGAGC ACTGCGAGCC AACAGGAGAT CCAGGGGCTG 
GACACCAAGA TCCACGAGAC GGTGGACACG ATCAACCAGA TGAAGACGAA CAGGGAGTTC 
TTCCTAAGCT TCGCCAAGGA TCCACAAATG TTTATTCATC GCTGGATCAT CAGTGAGACG 
AGGGATTTGA AGCTGATGAC CGATGTAGCT GGCAATCCGG AGGAGGAGCG TCGGGCGGAG 
TTCTATTACC AGCCATGGAC GCACGAGGCC GTTTCGCGCT ACTTCTTCAC CAAGGTCAAC 
CAGAAGCGGG CCGAATTGGA GCAGGCGCTG GGCATACGCA ACGGCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_511143.2
CDS	136..1683
Translation	MSQRFAPGQAPVQSRYQPPPPAPGMRPYPPPGASFPPRGFPLHPNTTQPVPGTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSGGGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIESGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQALGIRNG

Target ORF information:

RefSeq Version	NM_078588.4
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster brahma associated protein 60kD (Bap60), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_078588.4

ORF Insert Sequence:

ATGTCGCAAC GCTTTGCACC TGGCCAAGCG CCGGTGCAGT CGCGTTATCA GCCACCACCA 
CCGGCGCCCG GCATGCGTCC CTATCCGCCG CCAGGCGCCT CTTTTCCACC GCGCGGGTTT 
CCCCTGCATC CGAACACTAC TCAACCTGTT CCCGGCACGG CGAACGTGGC CGGGGTACCG 
GGAGTTCCTG GAGTACCCGG CGTACCGGGA CCATCGCTAC TGCAGCGCGC CGCCCAACAG 
CCGGGCTTTC AGAGCAGCCT TCGCGGTACT GGAGCCGGAG GTGGCGGTGT TGGATCCGGC 
GGAGGCAGCA AGAGGTCAAA TGAATCCCGC AGTTTGGGTG GCGGTGGTAG CAAAAGTGAT 
TTTGCGACGG CCAAAAAGAA AAAGAAGCTG GCCGAAAAGA TACTGCCGCA GAAGGTGCGG 
GATCTGGTGC CCGAATCGCA AGCGTACATG GATCTGCTGA CGTTTGAGCG AAAACTGGAT 
GCCACCATAA TGCGCAAACG TCTGGACATC CAGGAGGCCC TCAAGCGCCC CATGAAGCAG 
AAGCGCAAGC TGCGCATCTT CATCTCGAAC ACATTCTATC CCAGCAAGGA GCCCACAAAT 
GATGGCGAGG AGGGCGCCGT TGCCTCTTGG GAATTGCGGG TGGAGGGTCG CCTGTTAGAG 
GATGGCAAGG GCGATCCCAA TACAAAGATC AAACGCAAGT TTTCGTCGTT TTTCAAGTCG 
CTGGTTATCG AGCTGGATAA GGAACTGTAC GGTCCGGACA ACCATCTGGT CGAGTGGCAT 
CGCACTCACA CCACCCAGGA GACGGACGGG TTCCAGGTGA AGCGGCCGGG CGATCGCAAT 
GTGCGCTGCA CCATCCTCCT GCTGCTTGAC TACCAGCCGC TGCAGTTCAA GCTGGACCCG 
CGACTCGCCA GGTTGCTGGG CGTACACACA CAGACCAGGC CGGTGATCAT ATCCGCCCTG 
TGGCAGTACA TCAAGACGCA CAAGCTACAG GATGCCCACG AGCGGGAGTA CATCAATTGC 
GACAAGTATC TGGAGCAGAT ATTCAGTTGC CAGCGGATGA AGTTTGCCGA GATACCGCAA 
CGCCTCAATC CGCTGCTGCA TCCGCCCGAT CCGATTGTGA TCAATCATTT CATTGAGAGC 
GGTGCAGAGA ACAAGCAGAC TGCCTGCTAC GACATCGATG TGGAGGTGGA TGATACGCTC 
AAAAACCAGA TGAACAGCTT CCTGATGAGC ACTGCGAGCC AACAGGAGAT CCAGGGGCTG 
GACACCAAGA TCCACGAGAC GGTGGACACG ATCAACCAGA TGAAGACGAA CAGGGAGTTC 
TTCCTAAGCT TCGCCAAGGA TCCACAAATG TTTATTCATC GCTGGATCAT CAGTGAGACG 
AGGGATTTGA AGCTGATGAC CGATGTAGCT GGCAATCCGG AGGAGGAGCG TCGGGCGGAG 
TTCTATTACC AGCCATGGAC GCACGAGGCC GTTTCGCGCT ACTTCTTCAC CAAGGTCAAC 
CAGAAGCGGG CCGAATTGGA GCAGGCGCTG GGCATACGCA ACGGCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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Bap60 cDNA ORF clone, Drosophila melanogaster(fruit fly)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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