smarcd1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	smarcd1
Entrez Gene ID	323115
Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Synonyms	wu:fa10h07,wu:fb82d01,wu:fi45f10
General protein information	Preferred Names SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 Names SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 BAF60a
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_198358.1	NP_938172.1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP005336	XP_315349.3
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000923	XP_309104.5
Rattus norvegicus (Norway rat)	Smarcd1	NP_001102222.1
Gallus gallus (chicken)	SMARCD1	XP_424488.3
Drosophila melanogaster (fruit fly)	Bap60	NP_511143.2
Arabidopsis thaliana (thale cress)	CHC1	NP_196921.1
Arabidopsis thaliana (thale cress)	AT3G01890	NP_566154.2
Xenopus tropicalis (tropical clawed frog)	smarcd1	NP_001004862.1
Homo sapiens (human)	SMARCD1	NP_003067.3
Canis lupus familiaris (dog)	SMARCD1	XP_543674.3
Bos taurus (cattle)	SMARCD1	NP_001033648.1
Caenorhabditis elegans (roundworm)	swsn-2.2	NP_491329.2
Oryza sativa (rice)	Os04g0382100	NP_001052605.1
Pan troglodytes (chimpanzee)	SMARCD1	XP_509054.3
Mus musculus (house mouse)	Smarcd1	NP_114030.2
Macaca mulatta (Rhesus monkey)	LOC712130	XP_001111275.2
Danio rerio (zebrafish)	smarcd1	NP_938172.1
Caenorhabditis elegans (roundworm)	swsn-2.1	NP_499250.1

Gene Ontology
Bibliography

Related articles in PubMed

Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish.
Brocal I, White RJ, Dooley CM, Carruthers SN, Clark R, Hall A, Busch-Nentwich EM, Stemple DL, Kettleborough RN
BMC genomics17259(2016 Mar)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Large-scale discovery of novel genetic causes of developmental disorders.

Nature519(7542)223-8(2015 Mar)

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Huang HT, Kathrein KL, Barton A, Gitlin Z, Huang YH, Ward TP, Hofmann O, Dibiase A, Song A, Tyekucheva S, Hide W, Zhou Y, Zon LI
Nature cell biology15(12)1516-25(2013 Dec)

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ
Genes & development23(5)619-32(2009 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following smarcd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the smarcd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa36090	NM_198358.1 Latest version!	Danio rerio SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (smarcd1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$307.30 $439.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

smarcd1 ( NM_198358.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_938172.1 Danio rerio SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (smarcd1), mRNA.

Price & Availability↑

CloneID	ODa36090
Clone ID Related Accession (Same CDS sequence)	NM_198358.1
Accession Version	NM_198358.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1542902400000
Organism	Danio rerio(zebrafish)
Product	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC049347.1. On Jul 6, 2005 this sequence version replaced XM_696926.1. ##Evidence-Data-START## Transcript exon combination :: BC049347.1, BC165365.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCGGCGC GGAGTGGTTT TCAGCCTTCG ACACCCGGTG GCGGCGGAGC CCCGATGGGA 
CCCGGGCCGC CGGTAGCCGG AGCAGGACCC GGTATGGGTC CCGGTACACC CTCAGGAAGG 
ATGGGACCAG GCGGCCCGCA GAACCACATG TACCGATCAC CGATGCCCGG TTACCCGAGA 
CCAGGAATGC CTCCAGCCAG TCGTATGACT CCTCAGGGAC CCTCCATGGG GCCCCCAGGT 
TACGGGGCCA GTCCTGTTTC CCGCCCCGGC ATGCCAGTAA TGGACCCGTC CCGCAAACGT 
CCAGCGCCAA ATCAGATACA GCAGGTTCAA CAGCAAAATC GCAACCAACA TGCCAAGAAA 
AAGAAAATGG CAGATAAAAT ACTACCTCAA AGAATCAGAG AGCTTGTCCC AGAGTCTCAG 
GCTTATATGG ACCTGTTGGC GTTTGAGAGG AAGCTCGACC AGACCATCAT GCGCAAACGA 
CTTGATATTC AGGAAGCTCT CAAGAGACCC ATTAAGCAAA AAAGAAAACT CCGAATATTT 
ATCTCCAACA CATTCAACCC TGCCAAGCCA GATGCAGAGG ATGGCGAGGG AACTGTTGCA 
TCTTGGGAGT TGCGTGTGGA GGGGCGGCTT CTTGAGGATA CTGCTGTGTC CAAGTATGAA 
GCCACCAAGC AGAAGAGGAA GTTTTCTTCT TTTTTCAAGT CTTTAGTGAT CGAGTTGGAC 
AAAGACTTGT ATGGACCTGA CAATCATTTG GTTGAGTGGC ACAGAACAGC CACAACTCAG 
GAGACAGATG GATTTCAGGT CAAGAGGCCT GGGGATGTTG GGGTCCGCTG TACTGTACTG 
CTCATGCTGG ACTACCAGCC CCCTCAGTAT AAGCTGGACC CCCGCCTGGC CCGGCTGCTG 
GGGATTCACA CTCAGACCCG GCCTGTGATC ATTCAGGCTT TGTGGCAGTA TGTGAAGACC 
CACAAACTCC AGGACCCTCA TGAACGAGAG TTCATCAACT GTGACAAATA CCTCCAGCAG 
ATTTTTGAAA CCCAGAGGAT GAAGTTCTCT GAGATCCCTC AGCGGCTGCA TGCCCTACTG 
ATGCCTCCAG AACCAATCAT CATCAACCAC GTCATCAGCG TTGATCCCAA TGACCAGAAG 
AAGACTGCAT GCTATGATAT TGACGTGGAA GTGGACGACA CCCTGAAGAC CCAGATGAAC 
TCTTTCCTGC TTTCCACGGC CAGCCAGCAG GAGATTGCAG GCCTCGACAA CAAGATTCAT 
GAGACCATCG AAACCATTAA TCAACTCAAG ACTCAGAGGG AGTTCATGTT GAGCTTTGCG 
CGAGACCCGC AGGGCTTCAT CAATGACTGG CTCCAGTCGC AGTGCAGAGA CTTGAAGACG 
ATGACGGATG TTGTCGGAAA CCCAGAGGAG GAAAGAAGAG CCGAGTTCTA CTACCAGCCT 
TGGGCTCAAG AGGCTGTGTG TCGCTACTTC TATTCAAAGG TCCAGCAAAG GAGACAGGAG 
CTGGAACAGG CTCTTGGCAT TCGAAACACA TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_938172.1
CDS	28..1560
Translation	MAARSGFQPSTPGGGGAPMGPGPPVAGAGPGMGPGTPSGRMGPGGPQNHMYRSPMPGYPRPGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPAPNQIQQVQQQNRNQHAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQYKLDPRLARLLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT

Target ORF information:

RefSeq Version	NM_198358.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (smarcd1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_198358.1

ORF Insert Sequence:

ATGGCGGCGC GGAGTGGTTT TCAGCCTTCG ACACCCGGTG GCGGCGGAGC CCCGATGGGA 
CCCGGGCCGC CGGTAGCCGG AGCAGGACCC GGTATGGGTC CCGGTACACC CTCAGGAAGG 
ATGGGACCAG GCGGCCCGCA GAACCACATG TACCGATCAC CGATGCCCGG TTACCCGAGA 
CCAGGAATGC CTCCAGCCAG TCGTATGACT CCTCAGGGAC CCTCCATGGG GCCCCCAGGT 
TACGGGGCCA GTCCTGTTTC CCGCCCCGGC ATGCCAGTAA TGGACCCGTC CCGCAAACGT 
CCAGCGCCAA ATCAGATACA GCAGGTTCAA CAGCAAAATC GCAACCAACA TGCCAAGAAA 
AAGAAAATGG CAGATAAAAT ACTACCTCAA AGAATCAGAG AGCTTGTCCC AGAGTCTCAG 
GCTTATATGG ACCTGTTGGC GTTTGAGAGG AAGCTCGACC AGACCATCAT GCGCAAACGA 
CTTGATATTC AGGAAGCTCT CAAGAGACCC ATTAAGCAAA AAAGAAAACT CCGAATATTT 
ATCTCCAACA CATTCAACCC TGCCAAGCCA GATGCAGAGG ATGGCGAGGG AACTGTTGCA 
TCTTGGGAGT TGCGTGTGGA GGGGCGGCTT CTTGAGGATA CTGCTGTGTC CAAGTATGAA 
GCCACCAAGC AGAAGAGGAA GTTTTCTTCT TTTTTCAAGT CTTTAGTGAT CGAGTTGGAC 
AAAGACTTGT ATGGACCTGA CAATCATTTG GTTGAGTGGC ACAGAACAGC CACAACTCAG 
GAGACAGATG GATTTCAGGT CAAGAGGCCT GGGGATGTTG GGGTCCGCTG TACTGTACTG 
CTCATGCTGG ACTACCAGCC CCCTCAGTAT AAGCTGGACC CCCGCCTGGC CCGGCTGCTG 
GGGATTCACA CTCAGACCCG GCCTGTGATC ATTCAGGCTT TGTGGCAGTA TGTGAAGACC 
CACAAACTCC AGGACCCTCA TGAACGAGAG TTCATCAACT GTGACAAATA CCTCCAGCAG 
ATTTTTGAAA CCCAGAGGAT GAAGTTCTCT GAGATCCCTC AGCGGCTGCA TGCCCTACTG 
ATGCCTCCAG AACCAATCAT CATCAACCAC GTCATCAGCG TTGATCCCAA TGACCAGAAG 
AAGACTGCAT GCTATGATAT TGACGTGGAA GTGGACGACA CCCTGAAGAC CCAGATGAAC 
TCTTTCCTGC TTTCCACGGC CAGCCAGCAG GAGATTGCAG GCCTCGACAA CAAGATTCAT 
GAGACCATCG AAACCATTAA TCAACTCAAG ACTCAGAGGG AGTTCATGTT GAGCTTTGCG 
CGAGACCCGC AGGGCTTCAT CAATGACTGG CTCCAGTCGC AGTGCAGAGA CTTGAAGACG 
ATGACGGATG TTGTCGGAAA CCCAGAGGAG GAAAGAAGAG CCGAGTTCTA CTACCAGCCT 
TGGGCTCAAG AGGCTGTGTG TCGCTACTTC TATTCAAAGG TCCAGCAAAG GAGACAGGAG 
CTGGAACAGG CTCTTGGCAT TCGAAACACA TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish.
BMC genomics17259(2016 Mar)
Brocal I,White RJ,Dooley CM,Carruthers SN,Clark R,Hall A,Busch-Nentwich EM,Stemple DL,Kettleborough RN

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Large-scale discovery of novel genetic causes of developmental disorders.
Nature519(7542)223-8(2015 Mar)

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Nature cell biology15(12)1516-25(2013 Dec)
Huang HT,Kathrein KL,Barton A,Gitlin Z,Huang YH,Ward TP,Hofmann O,Dibiase A,Song A,Tyekucheva S,Hide W,Zhou Y,Zon LI

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Genes & development23(5)619-32(2009 Mar)
Mishima Y,Abreu-Goodger C,Staton AA,Stahlhut C,Shou C,Cheng C,Gerstein M,Enright AJ,Giraldez AJ

REQUEST A QUOTE

EMAIL

gene@genscript.com

PHONE

1-877-436-7274

ONLINE FORM

Online Quote Submission

ONLINE FORM

Online Quote Submission

smarcd1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Most Popular Services

Services & Products

News & Blogs

REQUEST A QUOTE

EMAIL

PHONE

ONLINE FORM

ONLINE FORM