ybx1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ybx1
Entrez Gene ID	795398
Full Name	Y box binding protein 1
Synonyms	hm:zeh0308,nsep1,wu:fb01g10,wu:fb08c05,wu:fb16e10,wu:fj26c09,yb1,zfY1,zgc:85599
General protein information	Preferred Names Y box binding protein 1 Names nuclease-sensitive element-binding protein 1 nuclease sensitive element binding protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001126457.1	NP_001119929.1	Y-box-binding protein 1 isoform 1
NM_131620.1	NP_571695.1	Y-box-binding protein 1 isoform 2

Pathways from BioSystems

Homologies

Homo sapiens (human)	YBX1	NP_004550.2
Canis lupus familiaris (dog)	LOC607025	XP_848660.2
Rattus norvegicus (Norway rat)	Ybx1	NP_113751.3
Danio rerio (zebrafish)	ybx1	NP_571695.1
Mus musculus (house mouse)	Ybx1	NP_035862.2
Pan troglodytes (chimpanzee)	YBX1	XP_525693.3
Bos taurus (cattle)	YBX1	NP_777240.1
Macaca mulatta (Rhesus monkey)	YBX1	XP_001088540.2
Xenopus tropicalis (tropical clawed frog)	ybx1	NP_001016677.1

Gene Ontology
Bibliography

Related articles in PubMed

RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.
Yang Y, Wang L, Han X, Yang WL, Zhang M, Ma HL, Sun BF, Li A, Xia J, Chen J, Heng J, Wu B, Chen YS, Xu JW, Yang X, Yao H, Sun J, Lyu C, Wang HL, Huang Y, Sun YP, Zhao YL, Meng A, Ma J, Liu F, Yang YG
Molecular cell75(6)1188-1202.e11(2019 09)

YB-1 recruitment to stress granules in zebrafish cells reveals a differential adaptive response to stress.
Guarino AM, Mauro GD, Ruggiero G, Geyer N, Delicato A, Foulkes NS, Vallone D, Calabrò V
Scientific reports9(1)9059(2019 Jun)

Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation.
Sun J, Yan L, Shen W, Meng A
Development (Cambridge, England)145(19)(2018 10)

An efficient platform for generating somatic point mutations with germline transmission in the zebrafish by CRISPR/Cas9-mediated gene editing.
Zhang Y, Zhang Z, Ge W
The Journal of biological chemistry293(17)6611-6622(2018 04)

Translational co-regulation of a ligand and inhibitor by a conserved RNA element.
Zaucker A, Nagorska A, Kumari P, Hecker N, Wang Y, Huang S, Cooper L, Sivashanmugam L, VijayKumar S, Brosens J, Gorodkin J, Sampath K
Nucleic acids research46(1)104-119(2018 01)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ybx1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ybx1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa14591	NM_001126457.1 Latest version!	Danio rerio Y box binding protein 1 (ybx1), transcript variant 1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$139.30 $199.00
ODa36924	NM_131620.1 Latest version!	Danio rerio Y box binding protein 1 (ybx1), transcript variant 2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$139.30 $199.00

ORF Online Only Promotion

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5 or more Clone	50% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ybx1 ( NM_001126457.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001119929.1 Danio rerio Y box binding protein 1 (ybx1), transcript variant 1, mRNA.

Price & Availability↑

CloneID	ODa14591
Clone ID Related Accession (Same CDS sequence)	NM_001126457.1
Accession Version	NM_001126457.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 930bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1574438400000
Organism	Danio rerio(zebrafish)
Product	Y-box-binding protein 1 isoform 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR792439.12. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC050156.1, GFIL01043870.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168448, SAMEA3505370 [ECO:0000348] ##Evidence-Data-END##

ATGAGCAGCG AGGCCGAGAC ACAACAGCCG CCGCAGCCTG CCGCCGACGC GGAGAGCCCG 
TCCAGCCCGG CAGCCGCAGC TACCGCGGGG GATAAGAAGG TCATCGCAAC AAAAGTTTTG 
GGGACAGTGA AATGGTTCAA TGTAAGGAAC GGCTACGGTT TCATCAACAG GAATGACACA 
AAGGAAGATG TCTTTGTGCA TCAGACCGCC ATTAAAAAGA ACAACCCCAG GAAATATCTC 
CGTAGCGTTG GGGACGGAGA GACTGTGGAG TTCGACGTGG TAGAAGGGGA GAAGGGGGCT 
GAGGCAGCAA ATGTTACCGG CCCGGGTGGC GTTCCTGTGC AGGGTAGTAA GTATGCAGCT 
GACAGGAACC GTTACAGGCG GTACCCACGC AGGAGGGCCC CACCTCGCGA CTACCAGGAG 
AACTATCAGA GCGACCCTGA GGCAGAGCCC CGGGAGAAGA GAGAGGGGGC AGAGAGCGCC 
CCCGAGGGGG AGATGCAGCA GCAGCAGCGC AGACCCACTT ACCCCGGCAG ACGGCGCTAC 
CCACCATACT TCGTGCGGAG GCGTTACGGC AGACGCCCCC CCTACACCAA CTCACAAAGA 
GGAGAGATGA CAGAGGGTGG TGAAGGTGAA GAGAACCAAG GGGGTCCAGA CCAGGGCAAC 
AAACCAATGA GGCAGAACTA CTACAGAGGC TTCCGACCAA GGGGTCCCTC ACGTCCCCGG 
CCAGTGCGGG ACGGAGAGGA GGATAAGGAG AACCAGAGCG AGAGCGGACA GAACCAGGAG 
CCCCGTCAGC GCCGCTACCG TCGCAACTTC AACTACCGCC GCAGACGCCC CCAGACAACC 
AAGCCTCAGG ACGGCAAGGA CAGCAAGGCA GCCGACGCAT CAGCCGACAA ATCAGCCGCT 
CCCGAAGCCG AACAGGGCGG AGCAGATTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001119929.1
CDS	207..1136
Translation	MSSEAETQQPPQPAADAESPSSPAAAATAGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNRYRRYPRRRAPPRDYQENYQSDPEAEPREKREGAESAPEGEMQQQQRRPTYPGRRRYPPYFVRRRYGRRPPYTNSQRGEMTEGGEGEENQGGPDQGNKPMRQNYYRGFRPRGPSRPRPVRDGEEDKENQSESGQNQEPRQRRYRRNFNYRRRRPQTTKPQDGKDSKAADASADKSAAPEAEQGGAD

Target ORF information:

RefSeq Version	NM_001126457.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio Y box binding protein 1 (ybx1), transcript variant 1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001126457.1

ORF Insert Sequence:

ATGAGCAGCG AGGCCGAGAC ACAACAGCCG CCGCAGCCTG CCGCCGACGC GGAGAGCCCG 
TCCAGCCCGG CAGCCGCAGC TACCGCGGGG GATAAGAAGG TCATCGCAAC AAAAGTTTTG 
GGGACAGTGA AATGGTTCAA TGTAAGGAAC GGCTACGGTT TCATCAACAG GAATGACACA 
AAGGAAGATG TCTTTGTGCA TCAGACCGCC ATTAAAAAGA ACAACCCCAG GAAATATCTC 
CGTAGCGTTG GGGACGGAGA GACTGTGGAG TTCGACGTGG TAGAAGGGGA GAAGGGGGCT 
GAGGCAGCAA ATGTTACCGG CCCGGGTGGC GTTCCTGTGC AGGGTAGTAA GTATGCAGCT 
GACAGGAACC GTTACAGGCG GTACCCACGC AGGAGGGCCC CACCTCGCGA CTACCAGGAG 
AACTATCAGA GCGACCCTGA GGCAGAGCCC CGGGAGAAGA GAGAGGGGGC AGAGAGCGCC 
CCCGAGGGGG AGATGCAGCA GCAGCAGCGC AGACCCACTT ACCCCGGCAG ACGGCGCTAC 
CCACCATACT TCGTGCGGAG GCGTTACGGC AGACGCCCCC CCTACACCAA CTCACAAAGA 
GGAGAGATGA CAGAGGGTGG TGAAGGTGAA GAGAACCAAG GGGGTCCAGA CCAGGGCAAC 
AAACCAATGA GGCAGAACTA CTACAGAGGC TTCCGACCAA GGGGTCCCTC ACGTCCCCGG 
CCAGTGCGGG ACGGAGAGGA GGATAAGGAG AACCAGAGCG AGAGCGGACA GAACCAGGAG 
CCCCGTCAGC GCCGCTACCG TCGCAACTTC AACTACCGCC GCAGACGCCC CCAGACAACC 
AAGCCTCAGG ACGGCAAGGA CAGCAAGGCA GCCGACGCAT CAGCCGACAA ATCAGCCGCT 
CCCGAAGCCG AACAGGGCGG AGCAGATTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ybx1 ( NM_131620.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571695.1 Danio rerio Y box binding protein 1 (ybx1), transcript variant 2, mRNA.

Price & Availability↑

CloneID	ODa36924
Clone ID Related Accession (Same CDS sequence)	NM_131620.1
Accession Version	NM_131620.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 933bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1574438400000
Organism	Danio rerio(zebrafish)
Product	Y-box-binding protein 1 isoform 2
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF093129.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF093129.1, BC160650.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168448, SAMEA3505370 [ECO:0000348] ##Evidence-Data-END##

ATGAGCAGCG AGGCCGAGAC ACAACAGCCG CCGCAGCCTG CCGCCGACGC GGAGAGCCCG 
TCCAGCCCGG CAGCCGCAGC TACCGCGGGG GATAAGAAGG TCATCGCAAC AAAAGTTTTG 
GGGACAGTGA AATGGTTCAA TGTAAGGAAC GGCTACGGTT TCATCAACAG GAATGACACA 
AAGGAAGATG TCTTTGTGCA CCAGACCGCC ATTAAAAAGA ACAACCCCAG GAAATATCTC 
CGTAGCGTTG GGGACGGAGA GACTGTGGAG TTCGACGTGG TAGAAGGGGA GAAGGGGGCT 
GAGGCAGCAA ATGTTACCGG CCCGGGTGGC GTTCCTGTGC AGGGTAGTAA GTATGCAGCT 
GACAGGAACC GTTACAGGCG GTACCCACGC AGGAGGGCCC CACCTCGCGA CTACCAGGAG 
AACTATCAGA GCGACCCAGA GGCAGAGCCC CGGGAGAAGA GAGAGGGGGC AGAGAGCGCC 
CCCGAGGGGG AGATGCAGCA GCAGCAGCGC AGACCCACTT ACCCCGGCAG ACGGCGCTAC 
CCACCATACT TCGTGCGGAG GCGTTACGGC AGACGCCCCC CCTACACCAA CTCACAAAGA 
GGAGAGATGA CAGAGGGTGG TGAAGGTGAA GAGAACCAAG GGGGTCCAGA CCAGGGCAAC 
AAACCAATGA GGCAGAACTA CTACAGAGGC TTCCGACCAA GCAGGGGTCC CCCACGTCCC 
CGGCCAGTGC GGGACGGAGA GGAGGATAAG GAGAACCAGA GCGAGAGCGG ACAGAACCAG 
GAGCCCCGTC AGCGCCGCTA CCGTCGCAAC TTCAACTACC GCCGCAGACG CCCCCAGACA 
ACCAAGCCTC AGGACGGCAA GGACAGCAAG GCAGCCGACG CATCAGCCGA CAAATCAGCC 
GCTCCCGAAG CCGAACAGGG CGGAGCAGAT TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571695.1
CDS	122..1054
Translation	MSSEAETQQPPQPAADAESPSSPAAAATAGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNRYRRYPRRRAPPRDYQENYQSDPEAEPREKREGAESAPEGEMQQQQRRPTYPGRRRYPPYFVRRRYGRRPPYTNSQRGEMTEGGEGEENQGGPDQGNKPMRQNYYRGFRPSRGPPRPRPVRDGEEDKENQSESGQNQEPRQRRYRRNFNYRRRRPQTTKPQDGKDSKAADASADKSAAPEAEQGGAD

Target ORF information:

RefSeq Version	NM_131620.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio Y box binding protein 1 (ybx1), transcript variant 2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_131620.1

ORF Insert Sequence:

ATGAGCAGCG AGGCCGAGAC ACAACAGCCG CCGCAGCCTG CCGCCGACGC GGAGAGCCCG 
TCCAGCCCGG CAGCCGCAGC TACCGCGGGG GATAAGAAGG TCATCGCAAC AAAAGTTTTG 
GGGACAGTGA AATGGTTCAA TGTAAGGAAC GGCTACGGTT TCATCAACAG GAATGACACA 
AAGGAAGATG TCTTTGTGCA CCAGACCGCC ATTAAAAAGA ACAACCCCAG GAAATATCTC 
CGTAGCGTTG GGGACGGAGA GACTGTGGAG TTCGACGTGG TAGAAGGGGA GAAGGGGGCT 
GAGGCAGCAA ATGTTACCGG CCCGGGTGGC GTTCCTGTGC AGGGTAGTAA GTATGCAGCT 
GACAGGAACC GTTACAGGCG GTACCCACGC AGGAGGGCCC CACCTCGCGA CTACCAGGAG 
AACTATCAGA GCGACCCAGA GGCAGAGCCC CGGGAGAAGA GAGAGGGGGC AGAGAGCGCC 
CCCGAGGGGG AGATGCAGCA GCAGCAGCGC AGACCCACTT ACCCCGGCAG ACGGCGCTAC 
CCACCATACT TCGTGCGGAG GCGTTACGGC AGACGCCCCC CCTACACCAA CTCACAAAGA 
GGAGAGATGA CAGAGGGTGG TGAAGGTGAA GAGAACCAAG GGGGTCCAGA CCAGGGCAAC 
AAACCAATGA GGCAGAACTA CTACAGAGGC TTCCGACCAA GCAGGGGTCC CCCACGTCCC 
CGGCCAGTGC GGGACGGAGA GGAGGATAAG GAGAACCAGA GCGAGAGCGG ACAGAACCAG 
GAGCCCCGTC AGCGCCGCTA CCGTCGCAAC TTCAACTACC GCCGCAGACG CCCCCAGACA 
ACCAAGCCTC AGGACGGCAA GGACAGCAAG GCAGCCGACG CATCAGCCGA CAAATCAGCC 
GCTCCCGAAG CCGAACAGGG CGGAGCAGAT TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.
Molecular cell75(6)1188-1202.e11(2019 09)
Yang Y,Wang L,Han X,Yang WL,Zhang M,Ma HL,Sun BF,Li A,Xia J,Chen J,Heng J,Wu B,Chen YS,Xu JW,Yang X,Yao H,Sun J,Lyu C,Wang HL,Huang Y,Sun YP,Zhao YL,Meng A,Ma J,Liu F,Yang YG

YB-1 recruitment to stress granules in zebrafish cells reveals a differential adaptive response to stress.
Scientific reports9(1)9059(2019 Jun)
Guarino AM,Mauro GD,Ruggiero G,Geyer N,Delicato A,Foulkes NS,Vallone D,Calabrò V

Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation.
Development (Cambridge, England)145(19)(2018 10)
Sun J,Yan L,Shen W,Meng A

An efficient platform for generating somatic point mutations with germline transmission in the zebrafish by CRISPR/Cas9-mediated gene editing.
The Journal of biological chemistry293(17)6611-6622(2018 04)
Zhang Y,Zhang Z,Ge W

Translational co-regulation of a ligand and inhibitor by a conserved RNA element.
Nucleic acids research46(1)104-119(2018 01)
Zaucker A,Nagorska A,Kumari P,Hecker N,Wang Y,Huang S,Cooper L,Sivashanmugam L,VijayKumar S,Brosens J,Gorodkin J,Sampath K

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ybx1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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