pax1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	pax1a
Entrez Gene ID	564359
Full Name	paired box 1a
Synonyms	zgc:158781
General protein information	Preferred Names paired box 1a Names paired box protein Pax-1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001080592.1	NP_001074061.1	paired box protein Pax-1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	PAX1	XP_002692205.2
Macaca mulatta (Rhesus monkey)	PAX1	XP_001095275.2
Mus musculus (house mouse)	Pax1	NP_032806.2
Canis lupus familiaris (dog)	PAX1	XP_542866.3
Danio rerio (zebrafish)	pax1b	XP_700877.6
Gallus gallus (chicken)	PAX1	XP_003640945.2
Homo sapiens (human)	PAX1	NP_001244025.1
Danio rerio (zebrafish)	pax1a	NP_001074061.1
Xenopus tropicalis (tropical clawed frog)	pax1	XP_002939483.2

Gene Ontology
Bibliography

Related articles in PubMed

Stereotypic generation of axial tenocytes from bipartite sclerotome domains in zebrafish.
Ma RC, Jacobs CT, Sharma P, Kocha KM, Huang P
PLoS genetics14(11)e1007775(2018 11)

Embryonic hematopoiesis in vertebrate somites gives rise to definitive hematopoietic stem cells.
Qiu J, Fan X, Wang Y, Jin H, Song Y, Han Y, Huang S, Meng Y, Tang F, Meng A
Journal of molecular cell biology8(4)288-301(2016 08)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Time point-based integrative analyses of deep-transcriptome identify four signal pathways in blastemal regeneration of zebrafish lower jaw.
Zhang H, Wang X, Lyu K, Gao S, Wang G, Fan C, Zhang XA, Yan J
Stem cells (Dayton, Ohio)33(3)806-18(2015 Mar)

Characterization of zebrafish Pax1b and Pax9 in fin bud development.
Chen X, Huang H, Wang H, Guo F, Du X, Ma L, Zhao L, Pan Z, Gui H, Yuan T, Liu X, Song L, Wang Y, He J, Lei H, Gao R
BioMed research international2014309385(2014)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pax1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pax1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa01897	NM_001080592.1 Latest version!	Danio rerio paired box 1a (pax1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

pax1a ( NM_001080592.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001074061.1 Danio rerio paired box 1a (pax1a), mRNA.

Price & Availability↑

CloneID	ODa01897
Clone ID Related Accession (Same CDS sequence)	NM_001080592.1
Accession Version	NM_001080592.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1080bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1553270400000
Organism	Danio rerio(zebrafish)
Product	paired box protein Pax-1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC129448.1. On Mar 11, 2007 this sequence version replaced XM_687699.2. ##Evidence-Data-START## Transcript exon combination :: BC129448.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168448, SAMEA3505370 [ECO:0000348] ##Evidence-Data-END##

ATGCTTTCGT GTTTTGCAGA GCAAACATAC GGGGAGGTGA ACCAGCTGGG GGGAGTTTTT 
GTCAATGGAC GCCCTTTGCC CAACGCAATA AGATTACGAA TAGTGGAGTT AGCCCAGCTT 
GGCATCCGAC CATGTGACAT AAGCAGACAG CTTCGGGTCT CTCATGGTTG TGTGAGTAAA 
ATCCTTGCGA GATACAACGA AACAGGGTCC ATTTTGCCCG GTGCCATCGG TGGCAGCAAA 
CCACGAGTTA CGACGCCAAA TGTAGTGAAA AACATACGGG ACTACAAACA AAGTGACCCG 
GGAATTTTTG CATGGGAGAT CCGGGACCGT CTCCTCGCGG ACGGAGTATG TGATAAGTAC 
AACGTGCCTT CGGTCAGCTC TATCAGCCGG ATATTAAGGA ACAAGATTGG AAACCTCTCC 
CAACCTAACC CATATGAAAA TGGCAAGCAA GCACCACCGC AGTCCAGCCT TTCCTATAAC 
CACATATACC CGTATTCATA CCCCAATGCA ATGTCTCCTT CCGGGACAAA AATGAGCAGT 
CCTCCTGGTG TCCCTGTAAC GGGTGGGCAT GTAAGCATTT CCCGTGGTTG GCCTTCAGCC 
CATACGGTCA GCAATATATT GGGCATTCGG GCTTTCATGG ATCCTACAGC TATTGCTAGC 
GCTGAAGGAT ACGCACCGAA AATGGAGGAT TGGGGTGTCA ATAGAGCGAC ATTTCAAAGT 
CATGGAGTCA ATGGAATAGA CAAATCATCC ATTGATGCAG ACATAAAATA CCCTCAGCCT 
TCGTCGACCC TGTCTAGCTA TGTCCCGGCG TGCGCGTACT CTCCCTCCAA CCAATACGGC 
GTGTACAGTG GTCCAGCAGG CGGTTATGTG AGTCCAGGTC ACCATTGGCA GGCCCAGGGC 
ACTAGTCTTA CCCACCCTGG CGGTGGCGTA GCGATGCACC CGAGTGACAT CCATTCTTCT 
ATGGCGTTCA AACATGCAGT ACGAGATGGA GACAGAAAAC CACCGAGTCC CCTTAGCAAG 
CAGCAGCACG AAGCCTTGTC TGGTATACAC GGACTCAGCC TTTCTACCTC ATCCTCGTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001074061.1
CDS	87..1166
Translation	MLSCFAEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKNIRDYKQSDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLSQPNPYENGKQAPPQSSLSYNHIYPYSYPNAMSPSGTKMSSPPGVPVTGGHVSISRGWPSAHTVSNILGIRAFMDPTAIASAEGYAPKMEDWGVNRATFQSHGVNGIDKSSIDADIKYPQPSSTLSSYVPACAYSPSNQYGVYSGPAGGYVSPGHHWQAQGTSLTHPGGGVAMHPSDIHSSMAFKHAVRDGDRKPPSPLSKQQHEALSGIHGLSLSTSSS

Target ORF information:

RefSeq Version	NM_001080592.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio paired box 1a (pax1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001080592.1

ORF Insert Sequence:

ATGCTTTCGT GTTTTGCAGA GCAAACATAC GGGGAGGTGA ACCAGCTGGG GGGAGTTTTT 
GTCAATGGAC GCCCTTTGCC CAACGCAATA AGATTACGAA TAGTGGAGTT AGCCCAGCTT 
GGCATCCGAC CATGTGACAT AAGCAGACAG CTTCGGGTCT CTCATGGTTG TGTGAGTAAA 
ATCCTTGCGA GATACAACGA AACAGGGTCC ATTTTGCCCG GTGCCATCGG TGGCAGCAAA 
CCACGAGTTA CGACGCCAAA TGTAGTGAAA AACATACGGG ACTACAAACA AAGTGACCCG 
GGAATTTTTG CATGGGAGAT CCGGGACCGT CTCCTCGCGG ACGGAGTATG TGATAAGTAC 
AACGTGCCTT CGGTCAGCTC TATCAGCCGG ATATTAAGGA ACAAGATTGG AAACCTCTCC 
CAACCTAACC CATATGAAAA TGGCAAGCAA GCACCACCGC AGTCCAGCCT TTCCTATAAC 
CACATATACC CGTATTCATA CCCCAATGCA ATGTCTCCTT CCGGGACAAA AATGAGCAGT 
CCTCCTGGTG TCCCTGTAAC GGGTGGGCAT GTAAGCATTT CCCGTGGTTG GCCTTCAGCC 
CATACGGTCA GCAATATATT GGGCATTCGG GCTTTCATGG ATCCTACAGC TATTGCTAGC 
GCTGAAGGAT ACGCACCGAA AATGGAGGAT TGGGGTGTCA ATAGAGCGAC ATTTCAAAGT 
CATGGAGTCA ATGGAATAGA CAAATCATCC ATTGATGCAG ACATAAAATA CCCTCAGCCT 
TCGTCGACCC TGTCTAGCTA TGTCCCGGCG TGCGCGTACT CTCCCTCCAA CCAATACGGC 
GTGTACAGTG GTCCAGCAGG CGGTTATGTG AGTCCAGGTC ACCATTGGCA GGCCCAGGGC 
ACTAGTCTTA CCCACCCTGG CGGTGGCGTA GCGATGCACC CGAGTGACAT CCATTCTTCT 
ATGGCGTTCA AACATGCAGT ACGAGATGGA GACAGAAAAC CACCGAGTCC CCTTAGCAAG 
CAGCAGCACG AAGCCTTGTC TGGTATACAC GGACTCAGCC TTTCTACCTC ATCCTCGTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Stereotypic generation of axial tenocytes from bipartite sclerotome domains in zebrafish.
PLoS genetics14(11)e1007775(2018 11)
Ma RC,Jacobs CT,Sharma P,Kocha KM,Huang P

Embryonic hematopoiesis in vertebrate somites gives rise to definitive hematopoietic stem cells.
Journal of molecular cell biology8(4)288-301(2016 08)
Qiu J,Fan X,Wang Y,Jin H,Song Y,Han Y,Huang S,Meng Y,Tang F,Meng A

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Time point-based integrative analyses of deep-transcriptome identify four signal pathways in blastemal regeneration of zebrafish lower jaw.
Stem cells (Dayton, Ohio)33(3)806-18(2015 Mar)
Zhang H,Wang X,Lyu K,Gao S,Wang G,Fan C,Zhang XA,Yan J

Characterization of zebrafish Pax1b and Pax9 in fin bud development.
BioMed research international2014309385(2014)
Chen X,Huang H,Wang H,Guo F,Du X,Ma L,Zhao L,Pan Z,Gui H,Yuan T,Liu X,Song L,Wang Y,He J,Lei H,Gao R

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pax1a cDNA ORF clone, Danio rerio(zebrafish)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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