mhc1zda cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	mhc1zda
Entrez Gene ID	102467219
Full Name	major histocompatibility complex class I ZDA
General protein information	Preferred Names major histocompatibility complex class I ZDA Names major histocompatibility complex class I ZDA MHC class I antigen ZDA
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_021476735.1	XP_021332410.1	major histocompatibility complex class I ZDA isoform X2
XM_005170991.3	XP_005171048.1	major histocompatibility complex class I ZDA isoform X1
NM_001287097.1	NP_001274026.1	major histocompatibility complex class I ZDA precursor
XM_005170991.4	XP_005171048.1	major histocompatibility complex class I ZDA isoform X1

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement.
Kim OTP, Nguyen PT, Shoguchi E, Hisata K, Vo TTB, Inoue J, Shinzato C, Le BTN, Nishitsuji K, Kanda M, Nguyen VH, Nong HV, Satoh N
BMC genomics19(1)733(2018 Oct)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

A nonclassical MHC class I U lineage locus in zebrafish with a null haplotypic variant.
Dirscherl H, Yoder JA
Immunogenetics67(9)501-13(2015 Sep)

The MHC class I genes of zebrafish.
Dirscherl H, McConnell SC, Yoder JA, de Jong JL
Developmental and comparative immunology46(1)11-23(2014 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following mhc1zda gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the mhc1zda cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa01838	NM_001287097.1 Latest version!	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ODa06121	XM_005170991.4 Latest version!	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ODa147193	XM_021476735.1 Latest version!	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
View Old Accession Versions >>
ODa06121	XM_005170991.3	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

mhc1zda ( NM_001287097.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001274026.1 Danio rerio major histocompatibility complex class I ZDA (mhc1zda), mRNA.

Price & Availability↑

CloneID	ODa01838
Clone ID Related Accession (Same CDS sequence)	NM_001287097.1
Accession Version	NM_001287097.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1191bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1548432000000
Organism	Danio rerio(zebrafish)
Product	major histocompatibility complex class I ZDA precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KC607848.1. ##Evidence-Data-START## Transcript exon combination :: KC607848.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCAGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCTCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CGACCTGCCG 
GGCATCTATG AATTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGAGC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAGAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGCTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TCAACAAATT CAGAGAATAT 
GGAGATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCCTG ATAAAGAGTT TGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTGAGAA AGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AACCACACAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCGGT GCTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGCTCCCAA GAAACCCTTT TACAAAAACG GAATTGGGGA TAATGATCCA 
AGTGCAATAC CGCTAAATAA TAATCAACAC ATTGAACCAT CCGTGAAGGA GTCCAAAAAT 
AAACCGACAG CTGCAGAAGG ACAATCTACT GGTGGAGATC TGAAAAGTTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001274026.1
CDS	1..1191
Translation	MAVFVVLLLAVMLLDVEPATTEKHSLYYIYTALSRPVDLPGIYEFTAMGLLDDRQIDYYNSQEQKKIPKQHWMKERMQEDYWEKGTQSRKSKEQWFNVNVNILMDRMRHNKSDLHVLQWRHGCEIDSQDDDVRFSKGIDEYSYDGENFLSFDDADSQWVAPVDAALPTKRKWDNVPILNQYTKGYLEKECVDWLNKFREYGDEELREGSPPDVHVFARSIINGKAKLKLTCLATGFYPKDVYLTIRKYRMALPDKEFESSGVRPNHDGTFQLRKSTYIYEDEKAEYDCYVNHTTLGAPIIKKWDGKCSDCSKVTFLGMIVGAIIGAVLVLTVIGLVILVLTRKKAPKKPFYKNGIGDNDPSAIPLNNNQHIEPSVKESKNKPTAAEGQSTGGDLKS

Target ORF information:

RefSeq Version	NM_001287097.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001287097.1

ORF Insert Sequence:

ATGGCAGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCTCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CGACCTGCCG 
GGCATCTATG AATTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGAGC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAGAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGCTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TCAACAAATT CAGAGAATAT 
GGAGATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCCTG ATAAAGAGTT TGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTGAGAA AGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AACCACACAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCGGT GCTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGCTCCCAA GAAACCCTTT TACAAAAACG GAATTGGGGA TAATGATCCA 
AGTGCAATAC CGCTAAATAA TAATCAACAC ATTGAACCAT CCGTGAAGGA GTCCAAAAAT 
AAACCGACAG CTGCAGAAGG ACAATCTACT GGTGGAGATC TGAAAAGTTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

mhc1zda ( XM_005170991.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005171048.1 Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa06121
Clone ID Related Accession (Same CDS sequence)	XM_005170991.3 , XM_005170991.4
Accession Version	XM_005170991.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1164bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1466611200000
Organism	Danio rerio(Zebrafish)
Product	major histocompatibility complex class I ZDA isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005170991.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCCCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CAATCTGCCG 
GGCATCCATG AGTTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGATC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAAAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGTTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TTAACAAATT CAGAGAATAT 
GGAAATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCTTG ATAAAGATCT AGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTTAGAA TGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AAGCACAGAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCAGT GTTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGGAATTGG GGATAATGAT CCAAGTGCAA TACCGCTAAA TAATAATCAA 
CACATTGAAC CATCTGTGAA GGAGTCCAAA AATAAACCGA CAGCTGCAGA AGGACAATCT 
ACTGGTGGAG ATCTGAAAAG TTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005171048.1
CDS	36..1199
Translation	MAVFVVLLLAVMPLDVEPATTEKHSLYYIYTALSRPVNLPGIHEFTAMGLLDDRQIDYYNSQDQKKIPKQHWMKEKMQEDYWEKGTQSRKSKEQWFNVNVNILMDRMRHNKSDLHVLQWRHGCEIDSQDDDVRFSKGIDEYSYDGENFLSFDDADSQWVAPVDAALPTKRKWDNVPILNQYTKGYLEKECVDWLNKFREYGNEELREGSPPDVHVFARSIINGKAKLKLTCLATGFYPKDVYLTIRKYRMALLDKDLESSGVRPNHDGTFQLRMSTYIYEDEKAEYDCYVKHRTLGAPIIKKWDGKCSDCSKVTFLGMIVGAIIGAVFVLTVIGLVILVLTRKKGIGDNDPSAIPLNNNQHIEPSVKESKNKPTAAEGQSTGGDLKS

Target ORF information:

RefSeq Version	XM_005170991.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005170991.3

ORF Insert Sequence:

ATGGCTGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCCCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CAATCTGCCG 
GGCATCCATG AGTTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGATC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAAAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGTTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TTAACAAATT CAGAGAATAT 
GGAAATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCTTG ATAAAGATCT AGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTTAGAA TGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AAGCACAGAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCAGT GTTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGGAATTGG GGATAATGAT CCAAGTGCAA TACCGCTAAA TAATAATCAA 
CACATTGAAC CATCTGTGAA GGAGTCCAAA AATAAACCGA CAGCTGCAGA AGGACAATCT 
ACTGGTGGAG ATCTGAAAAG TTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

mhc1zda ( XM_005170991.4 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005171048.1 Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa06121
Clone ID Related Accession (Same CDS sequence)	XM_005170991.3 , XM_005170991.4
Accession Version	XM_005170991.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1164bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1497369600000
Organism	Danio rerio(zebrafish)
Product	major histocompatibility complex class I ZDA isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005170991.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCCCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CAATCTGCCG 
GGCATCCATG AGTTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGATC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAAAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGTTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TTAACAAATT CAGAGAATAT 
GGAAATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCTTG ATAAAGATCT AGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTTAGAA TGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AAGCACAGAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCAGT GTTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGGAATTGG GGATAATGAT CCAAGTGCAA TACCGCTAAA TAATAATCAA 
CACATTGAAC CATCTGTGAA GGAGTCCAAA AATAAACCGA CAGCTGCAGA AGGACAATCT 
ACTGGTGGAG ATCTGAAAAG TTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005171048.1
CDS	18..1181
Translation	MAVFVVLLLAVMPLDVEPATTEKHSLYYIYTALSRPVNLPGIHEFTAMGLLDDRQIDYYNSQDQKKIPKQHWMKEKMQEDYWEKGTQSRKSKEQWFNVNVNILMDRMRHNKSDLHVLQWRHGCEIDSQDDDVRFSKGIDEYSYDGENFLSFDDADSQWVAPVDAALPTKRKWDNVPILNQYTKGYLEKECVDWLNKFREYGNEELREGSPPDVHVFARSIINGKAKLKLTCLATGFYPKDVYLTIRKYRMALLDKDLESSGVRPNHDGTFQLRMSTYIYEDEKAEYDCYVKHRTLGAPIIKKWDGKCSDCSKVTFLGMIVGAIIGAVFVLTVIGLVILVLTRKKGIGDNDPSAIPLNNNQHIEPSVKESKNKPTAAEGQSTGGDLKS

Target ORF information:

RefSeq Version	XM_005170991.4
Organism	Danio rerio(zebrafish)
Definition	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005170991.4

ORF Insert Sequence:

ATGGCTGTTT TTGTCGTTTT GTTGTTGGCA GTGATGCCCC TTGATGTTGA ACCAGCCACG 
ACTGAAAAAC ACTCCCTCTA CTACATATAC ACAGCTTTAT CCAGACCTGT CAATCTGCCG 
GGCATCCATG AGTTCACTGC AATGGGTTTG CTTGATGACA GACAGATTGA CTATTACAAC 
AGCCAAGATC AGAAGAAGAT TCCTAAACAG CACTGGATGA AAGAGAAAAT GCAGGAAGAT 
TACTGGGAAA AAGGCACCCA GTCCAGAAAG AGCAAAGAAC AGTGGTTTAA TGTGAACGTC 
AACATTCTGA TGGACCGAAT GAGACACAAT AAATCAGATC TTCATGTTCT TCAGTGGAGA 
CATGGTTGTG AAATTGACAG TCAGGACGAT GATGTTCGGT TTTCTAAAGG CATTGATGAG 
TACAGTTATG ATGGAGAAAA CTTCTTGTCT TTTGATGATG CGGATTCTCA GTGGGTTGCC 
CCAGTGGACG CAGCTCTTCC AACCAAGAGG AAATGGGATA ATGTGCCCAT CCTAAATCAG 
TACACTAAGG GCTACCTGGA AAAAGAGTGT GTGGACTGGC TTAACAAATT CAGAGAATAT 
GGAAATGAGG AGCTTAGAGA AGGCTCTCCC CCAGATGTTC ATGTGTTTGC AAGGAGCATT 
ATCAATGGCA AAGCCAAGCT AAAACTCACT TGTCTGGCTA CTGGATTCTA CCCCAAAGAT 
GTGTATTTGA CCATAAGGAA ATACCGCATG GCACTGCTTG ATAAAGATCT AGAATCCTCA 
GGAGTTAGAC CAAACCATGA TGGGACCTTT CAGCTTAGAA TGAGCACTTA CATCTACGAG 
GATGAAAAAG CAGAATATGA CTGTTATGTG AAGCACAGAA CCCTTGGAGC ACCAATTATC 
AAAAAATGGG ATGGGAAATG CAGCGATTGC TCCAAGGTGA CTTTCCTTGG TATGATTGTT 
GGAGCAATAA TCGGAGCAGT GTTTGTGCTG ACAGTCATTG GCTTGGTAAT TTTGGTCTTA 
ACAAGGAAGA AAGGAATTGG GGATAATGAT CCAAGTGCAA TACCGCTAAA TAATAATCAA 
CACATTGAAC CATCTGTGAA GGAGTCCAAA AATAAACCGA CAGCTGCAGA AGGACAATCT 
ACTGGTGGAG ATCTGAAAAG TTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

mhc1zda ( XM_021476735.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_021332410.1 Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa147193
Clone ID Related Accession (Same CDS sequence)	XM_021476735.1
Accession Version	XM_021476735.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1050bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1497369600000
Organism	Danio rerio(zebrafish)
Product	major histocompatibility complex class I ZDA isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGGTTTGC TTGATGACAG ACAGATTGAC TATTACAACA GCCAAGATCA GAAGAAGATT 
CCTAAACAGC ACTGGATGAA AGAGAAAATG CAGGAAGATT ACTGGGAAAA AGGCACCCAG 
TCCAGAAAGA GCAAAGAACA GTGGTTTAAT GTGAACGTCA ACATTCTGAT GGACCGAATG 
AGACACAATA AATCAGATCT TCATGTTCTT CAGTGGAGAC ATGGTTGTGA AATTGACAGT 
CAGGACGATG ATGTTCGGTT TTCTAAAGGC ATTGATGAGT ACAGTTATGA TGGAGAAAAC 
TTCTTGTCTT TTGATGATGC GGATTCTCAG TGGGTTGCCC CAGTGGACGC AGCTCTTCCA 
ACCAAGAGGA AATGGGATAA TGTGCCCATC CTAAATCAGT ACACTAAGGG CTACCTGGAA 
AAAGAGTGTG TGGACTGGCT TAACAAATTC AGAGAATATG GAAATGAGGA GCTTAGAGAA 
GGCTCTCCCC CAGATGTTCA TGTGTTTGCA AGGAGCATTA TCAATGGCAA AGCCAAGCTA 
AAACTCACTT GTCTGGCTAC TGGATTCTAC CCCAAAGATG TGTATTTGAC CATAAGGAAA 
TACCGCATGG CACTGCTTGA TAAAGATCTA GAATCCTCAG GAGTTAGACC AAACCATGAT 
GGGACCTTTC AGCTTAGAAT GAGCACTTAC ATCTACGAGG ATGAAAAAGC AGAATATGAC 
TGTTATGTGA AGCACAGAAC CCTTGGAGCA CCAATTATCA AAAAATGGGA TGGGAAATGC 
AGCGATTGCT CCAAGGTGAC TTTCCTTGGT ATGATTGTTG GAGCAATAAT CGGAGCAGTG 
TTTGTGCTGA CAGTCATTGG CTTGGTAATT TTGGTCTTAA CAAGGAAGAA AGCTCCCAAG 
AAACCCTTTT ACAAAAACGG AATTGGGGAT AATGATCCAA GTGCAATACC GCTAAATAAT 
AATCAACACA TTGAACCATC TGTGAAGGAG TCCAAAAATA AACCGACAGC TGCAGAAGGA 
CAATCTACTG GTGGAGATCT GAAAAGTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_021332410.1
CDS	205..1254
Translation	MGLLDDRQIDYYNSQDQKKIPKQHWMKEKMQEDYWEKGTQSRKSKEQWFNVNVNILMDRMRHNKSDLHVLQWRHGCEIDSQDDDVRFSKGIDEYSYDGENFLSFDDADSQWVAPVDAALPTKRKWDNVPILNQYTKGYLEKECVDWLNKFREYGNEELREGSPPDVHVFARSIINGKAKLKLTCLATGFYPKDVYLTIRKYRMALLDKDLESSGVRPNHDGTFQLRMSTYIYEDEKAEYDCYVKHRTLGAPIIKKWDGKCSDCSKVTFLGMIVGAIIGAVFVLTVIGLVILVLTRKKAPKKPFYKNGIGDNDPSAIPLNNNQHIEPSVKESKNKPTAAEGQSTGGDLKS

Target ORF information:

RefSeq Version	XM_021476735.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio major histocompatibility complex class I ZDA (mhc1zda), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_021476735.1

ORF Insert Sequence:

ATGGGTTTGC TTGATGACAG ACAGATTGAC TATTACAACA GCCAAGATCA GAAGAAGATT 
CCTAAACAGC ACTGGATGAA AGAGAAAATG CAGGAAGATT ACTGGGAAAA AGGCACCCAG 
TCCAGAAAGA GCAAAGAACA GTGGTTTAAT GTGAACGTCA ACATTCTGAT GGACCGAATG 
AGACACAATA AATCAGATCT TCATGTTCTT CAGTGGAGAC ATGGTTGTGA AATTGACAGT 
CAGGACGATG ATGTTCGGTT TTCTAAAGGC ATTGATGAGT ACAGTTATGA TGGAGAAAAC 
TTCTTGTCTT TTGATGATGC GGATTCTCAG TGGGTTGCCC CAGTGGACGC AGCTCTTCCA 
ACCAAGAGGA AATGGGATAA TGTGCCCATC CTAAATCAGT ACACTAAGGG CTACCTGGAA 
AAAGAGTGTG TGGACTGGCT TAACAAATTC AGAGAATATG GAAATGAGGA GCTTAGAGAA 
GGCTCTCCCC CAGATGTTCA TGTGTTTGCA AGGAGCATTA TCAATGGCAA AGCCAAGCTA 
AAACTCACTT GTCTGGCTAC TGGATTCTAC CCCAAAGATG TGTATTTGAC CATAAGGAAA 
TACCGCATGG CACTGCTTGA TAAAGATCTA GAATCCTCAG GAGTTAGACC AAACCATGAT 
GGGACCTTTC AGCTTAGAAT GAGCACTTAC ATCTACGAGG ATGAAAAAGC AGAATATGAC 
TGTTATGTGA AGCACAGAAC CCTTGGAGCA CCAATTATCA AAAAATGGGA TGGGAAATGC 
AGCGATTGCT CCAAGGTGAC TTTCCTTGGT ATGATTGTTG GAGCAATAAT CGGAGCAGTG 
TTTGTGCTGA CAGTCATTGG CTTGGTAATT TTGGTCTTAA CAAGGAAGAA AGCTCCCAAG 
AAACCCTTTT ACAAAAACGG AATTGGGGAT AATGATCCAA GTGCAATACC GCTAAATAAT 
AATCAACACA TTGAACCATC TGTGAAGGAG TCCAAAAATA AACCGACAGC TGCAGAAGGA 
CAATCTACTG GTGGAGATCT GAAAAGTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement.
BMC genomics19(1)733(2018 Oct)
Kim OTP,Nguyen PT,Shoguchi E,Hisata K,Vo TTB,Inoue J,Shinzato C,Le BTN,Nishitsuji K,Kanda M,Nguyen VH,Nong HV,Satoh N

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

A nonclassical MHC class I U lineage locus in zebrafish with a null haplotypic variant.
Immunogenetics67(9)501-13(2015 Sep)
Dirscherl H,Yoder JA

The MHC class I genes of zebrafish.
Developmental and comparative immunology46(1)11-23(2014 Sep)
Dirscherl H,McConnell SC,Yoder JA,de Jong JL

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mhc1zda cDNA ORF clone, Danio rerio(zebrafish)

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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