Ssb cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Ssb
Entrez Gene ID	81783
Full Name	Sjogren syndrome antigen B
General protein information	Preferred Names Sjogren syndrome antigen B Names lupus La protein homolog la autoantigen homolog la ribonucleoprotein mRNA for autoantigen
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 3 Map Location: 3q21
Summary	involved in tRNA processing and nuclear export [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
XM_006234322.2	XP_006234384.1	lupus La protein homolog isoform X2
NM_031119.2	NP_112381.2	lupus La protein homolog
XM_006234321.2	XP_006234383.1	lupus La protein homolog isoform X1
XM_006234323.2	XP_006234385.1	lupus La protein homolog isoform X3

Pathways from BioSystems

Homologies

Macaca mulatta (Rhesus monkey)	LOC710344	XP_002808052.1
Canis lupus familiaris (dog)	SSB	XP_535952.2
Drosophila melanogaster (fruit fly)	La	NP_477014.1
Xenopus tropicalis (tropical clawed frog)	ssb	NP_001001455.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP008952	XP_319705.4
Homo sapiens (human)	SSB	NP_003133.1
Rattus norvegicus (Norway rat)	Ssb	NP_112381.2
Gallus gallus (chicken)	SSB	NP_001180598.1
Danio rerio (zebrafish)	ssb	NP_955841.1
Mus musculus (house mouse)	Ssb	NP_033304.1
Caenorhabditis elegans (roundworm)	C44E4.4	NP_491411.1
Pan troglodytes (chimpanzee)	SSB	XP_001138273.1
Bos taurus (cattle)	SSB	NP_788838.1

Gene Ontology
Bibliography

Related articles in PubMed

Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.
Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP
Journal of virology88(18)10340-53(2014 Sep)

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanhäusser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)

3' processing of eukaryotic precursor tRNAs.
Maraia RJ, Lamichhane TN
Wiley interdisciplinary reviews. RNA2(3)362-75(2011 May-Jun)

[Expression of SSB gene in rats with early isehemic myocardium and its implications].
Chen TY, Gao LB, Liang WB, Wang YY, Xue H, Liu Y, Pan XM, Fang WL, Zhang LS, Zhang L
Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition41(3)408-11(2010 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Ssb gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ssb cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ORa07655	NM_031119.2 Latest version!	Rattus norvegicus small RNA binding exonuclease protection factor La (Ssb), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ORa25943	XM_006234321.2 Latest version!	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ORa25944	XM_006234322.2 Latest version!	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ORa25945	XM_006234323.2 Latest version!	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X3, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Ssb ( NM_031119.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_112381.2 Rattus norvegicus small RNA binding exonuclease protection factor La (Ssb), mRNA.

Price & Availability↑

CloneID	ORa07655
Clone ID Related Accession (Same CDS sequence)	NM_031119.2
Accession Version	NM_031119.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1248bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1568995200000
Organism	Rattus norvegicus(Norway rat)
Product	lupus La protein homolog
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC081780.1. On Sep 16, 2004 this sequence version replaced NM_031119.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC081780.1, X67859.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END##

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCAGCCCG CAGATTTAAA 
GGAAGTCATG TTTTTACAGC AGCTCGCAGA TTTAAAGGAA GAGGGAAAGG TAATAGACCT 
GCTTATGCTG GGGCACCCAA AGGAAGAGGA CAGTTTCAAG GAAGGAGGAC AAGATTTGAT 
GATGATGATC ATCGTCGTGG ACCAGTGAAA AGAGGAAGAG ACGGAAGAGA CAGAGAAGAA 
CCCGCATCAA AGCATAAGAA AAGAGAGAAT GGTGCTAGAG ACAAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_112381.2
CDS	103..1350
Translation	MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEKAKDALEKARSANNGNLLLRNKKVTWKVLEGHAEKDAMKKITDDQQESLNKWKSKGGHAARRFKGSHVFTAARRFKGRGKGNRPAYAGAPKGRGQFQGRRTRFDDDDHRRGPVKRGRDGRDREEPASKHKKRENGARDK

Target ORF information:

RefSeq Version	NM_031119.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus small RNA binding exonuclease protection factor La (Ssb), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_031119.2

ORF Insert Sequence:

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCAGCCCG CAGATTTAAA 
GGAAGTCATG TTTTTACAGC AGCTCGCAGA TTTAAAGGAA GAGGGAAAGG TAATAGACCT 
GCTTATGCTG GGGCACCCAA AGGAAGAGGA CAGTTTCAAG GAAGGAGGAC AAGATTTGAT 
GATGATGATC ATCGTCGTGG ACCAGTGAAA AGAGGAAGAG ACGGAAGAGA CAGAGAAGAA 
CCCGCATCAA AGCATAAGAA AAGAGAGAAT GGTGCTAGAG ACAAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Ssb ( XM_006234321.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006234383.1 Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa25943
Clone ID Related Accession (Same CDS sequence)	XM_006234321.2
Accession Version	XM_006234321.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1245bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1469376000000
Organism	Rattus norvegicus(Norway rat)
Product	lupus La protein homolog isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2014 this sequence version replaced XM_006234321.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCCCGCAG ATTTAAAGGA 
AGTCATGTTT TTACAGCAGC TCGCAGATTT AAAGGAAGAG GGAAAGGTAA TAGACCTGCT 
TATGCTGGGG CACCCAAAGG AAGAGGACAG TTTCAAGGAA GGAGGACAAG ATTTGATGAT 
GATGATCATC GTCGTGGACC AGTGAAAAGA GGAAGAGACG GAAGAGACAG AGAAGAACCC 
GCATCAAAGC ATAAGAAAAG AGAGAATGGT GCTAGAGACA AGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006234383.1
CDS	179..1423
Translation	MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEKAKDALEKARSANNGNLLLRNKKVTWKVLEGHAEKDAMKKITDDQQESLNKWKSKGGHARRFKGSHVFTAARRFKGRGKGNRPAYAGAPKGRGQFQGRRTRFDDDDHRRGPVKRGRDGRDREEPASKHKKRENGARDK

Target ORF information:

RefSeq Version	XM_006234321.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006234321.2

ORF Insert Sequence:

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCCCGCAG ATTTAAAGGA 
AGTCATGTTT TTACAGCAGC TCGCAGATTT AAAGGAAGAG GGAAAGGTAA TAGACCTGCT 
TATGCTGGGG CACCCAAAGG AAGAGGACAG TTTCAAGGAA GGAGGACAAG ATTTGATGAT 
GATGATCATC GTCGTGGACC AGTGAAAAGA GGAAGAGACG GAAGAGACAG AGAAGAACCC 
GCATCAAAGC ATAAGAAAAG AGAGAATGGT GCTAGAGACA AGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Ssb ( XM_006234322.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006234384.1 Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ORa25944
Clone ID Related Accession (Same CDS sequence)	XM_006234322.2
Accession Version	XM_006234322.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1212bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1469376000000
Organism	Rattus norvegicus(Norway rat)
Product	lupus La protein homolog isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2014 this sequence version replaced XM_006234322.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCAGCTCG CAGATTTAAA 
GGAAGAGGGA AAGGTAATAG ACCTGCTTAT GCTGGGGCAC CCAAAGGAAG AGGACAGTTT 
CAAGGAAGGA GGACAAGATT TGATGATGAT GATCATCGTC GTGGACCAGT GAAAAGAGGA 
AGAGACGGAA GAGACAGAGA AGAACCCGCA TCAAAGCATA AGAAAAGAGA GAATGGTGCT 
AGAGACAAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006234384.1
CDS	179..1390
Translation	MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEKAKDALEKARSANNGNLLLRNKKVTWKVLEGHAEKDAMKKITDDQQESLNKWKSKGGHAARRFKGRGKGNRPAYAGAPKGRGQFQGRRTRFDDDDHRRGPVKRGRDGRDREEPASKHKKRENGARDK

Target ORF information:

RefSeq Version	XM_006234322.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006234322.2

ORF Insert Sequence:

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCAGCTCG CAGATTTAAA 
GGAAGAGGGA AAGGTAATAG ACCTGCTTAT GCTGGGGCAC CCAAAGGAAG AGGACAGTTT 
CAAGGAAGGA GGACAAGATT TGATGATGAT GATCATCGTC GTGGACCAGT GAAAAGAGGA 
AGAGACGGAA GAGACAGAGA AGAACCCGCA TCAAAGCATA AGAAAAGAGA GAATGGTGCT 
AGAGACAAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Ssb ( XM_006234323.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006234385.1 Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X3, mRNA.

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CloneID	ORa25945
Clone ID Related Accession (Same CDS sequence)	XM_006234323.2
Accession Version	XM_006234323.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1209bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1469376000000
Organism	Rattus norvegicus(Norway rat)
Product	lupus La protein homolog isoform X3
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2014 this sequence version replaced XM_006234323.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCTCGCAG ATTTAAAGGA 
AGAGGGAAAG GTAATAGACC TGCTTATGCT GGGGCACCCA AAGGAAGAGG ACAGTTTCAA 
GGAAGGAGGA CAAGATTTGA TGATGATGAT CATCGTCGTG GACCAGTGAA AAGAGGAAGA 
GACGGAAGAG ACAGAGAAGA ACCCGCATCA AAGCATAAGA AAAGAGAGAA TGGTGCTAGA 
GACAAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006234385.1
CDS	179..1387
Translation	MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMRRTLHKTFKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEKAKDALEKARSANNGNLLLRNKKVTWKVLEGHAEKDAMKKITDDQQESLNKWKSKGGHARRFKGRGKGNRPAYAGAPKGRGQFQGRRTRFDDDDHRRGPVKRGRDGRDREEPASKHKKRENGARDK

Target ORF information:

RefSeq Version	XM_006234323.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus Sjogren syndrome antigen B (Ssb), transcript variant X3, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006234323.2

ORF Insert Sequence:

ATGGCTGAAA ATGGAGATAA CGAAAAAATG GCTGCTCTGG AGGCCAAAAT CTGTCATCAA 
ATTGAGTATT ATTTTGGAGA CTTCAATTTG CCACGAGACA AGTTTTTAAA AGAACAGATC 
AAATTGGATG AAGGCTGGGT ACCTTTGGAA ACAATGATAA AATTCAACAG GCTAAACCGA 
CTGACAACAG ACTTTAATGT AATCGTGCAA GCATTGAGCA AATCTAAGGC AAATCTCATG 
GAAGTGAGTG CAGACAAAAC TAAAATTAGA AGATCACCAA GCAGACCACT CCCTGAAGTG 
ACGGATGAGT ATAAGAATGA TGTGAAAAAT AGATCTGTTT ATATTAAAGG CTTCCCAACT 
GATGCCACCC TTGATGATAT AAAAGAATGG CTAGATGATA AAGGCCAAAT ACTGAATATT 
CAGATGAGAA GAACATTGCA CAAAACATTT AAGGGGTCAA TATTTGCTGT GTTTGATAGT 
ATTCAGTCTG CAAAGAAGTT TGTGGACACC CCCGGCCAGA AGTACAAAGA CACTAATCTG 
CTAATACTCT TCAAGGAAGA TTACTTTGCA AAAAAAAATG AAGAAAGAAA GCAGAGCAAA 
GTGGAAGCTA AATTAAAAGC TAAACAAGAA CATGAAGGAC GACACAAACC AGGAAGTACT 
GAAACAAGAG CTCTAGAAGG AAAAATGGGA TGCTTACTGA AGTTTTCAGG TGACTTGGAT 
GACCAGACCT GTAGAGAAGA TTTACACTTC CTTTTCTCAA ATCATGGTGA AATAAAATGG 
ATTGACTTTG TCAGAGGAGC AAAAGAGGGA ATAATTCTCT TCAAAGAAAA GGCTAAGGAC 
GCACTTGAGA AAGCCAGAAG TGCAAATAAT GGTAACCTAC TGTTAAGGAA CAAAAAAGTG 
ACTTGGAAAG TACTAGAAGG ACATGCAGAA AAAGATGCAA TGAAAAAAAT CACAGATGAT 
CAACAAGAAT CTCTGAACAA ATGGAAGTCA AAAGGAGGTC ATGCTCGCAG ATTTAAAGGA 
AGAGGGAAAG GTAATAGACC TGCTTATGCT GGGGCACCCA AAGGAAGAGG ACAGTTTCAA 
GGAAGGAGGA CAAGATTTGA TGATGATGAT CATCGTCGTG GACCAGTGAA AAGAGGAAGA 
GACGGAAGAG ACAGAGAAGA ACCCGCATCA AAGCATAAGA AAAGAGAGAA TGGTGCTAGA 
GACAAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.
Journal of virology88(18)10340-53(2014 Sep)
Jefferson M,Donaszi-Ivanov A,Pollen S,Dalmay T,Saalbach G,Powell PP

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Cell149(6)1393-406(2012 Jun)
Castello A,Fischer B,Eichelbaum K,Horos R,Beckmann BM,Strein C,Davey NE,Humphreys DT,Preiss T,Steinmetz LM,Krijgsveld J,Hentze MW

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Molecular cell46(5)674-90(2012 Jun)
Baltz AG,Munschauer M,Schwanhäusser B,Vasile A,Murakawa Y,Schueler M,Youngs N,Penfold-Brown D,Drew K,Milek M,Wyler E,Bonneau R,Selbach M,Dieterich C,Landthaler M

3' processing of eukaryotic precursor tRNAs.
Wiley interdisciplinary reviews. RNA2(3)362-75(2011 May-Jun)
Maraia RJ,Lamichhane TN

[Expression of SSB gene in rats with early isehemic myocardium and its implications].
Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition41(3)408-11(2010 May)
Chen TY,Gao LB,Liang WB,Wang YY,Xue H,Liu Y,Pan XM,Fang WL,Zhang LS,Zhang L

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Ssb cDNA ORF clone, Rattus norvegicus(Norway rat)

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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