Pcdha11 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha11
Entrez Gene ID	394223
Full Name	protocadherin alpha 11
General protein information	Preferred Names protocadherin alpha 11 Names protocadherin alpha 11 PCDH-alpha9 homolog cadherin-related neuronal receptor 11 protocadherin alpha 9 homolog
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11

mRNA and Protein(s)

mRNA	Protein	Name
NM_199486.2	NP_955780.1	protocadherin alpha 11 precursor

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	PCDHA12	NP_001076053.2
Mus musculus (house mouse)	Pcdha10	NP_034091.1
Homo sapiens (human)	PCDHA12	NP_061726.1
Rattus norvegicus (Norway rat)	Pcdha11	NP_955780.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha11 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha11 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05362	NM_199486.2 Latest version!	Rattus norvegicus protocadherin alpha 11 (Pcdha11), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha11 ( NM_199486.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955780.1 Rattus norvegicus protocadherin alpha 11 (Pcdha11), mRNA.

Price & Availability↑

CloneID	ORa05362
Clone ID Related Accession (Same CDS sequence)	NM_199486.2
Accession Version	NM_199486.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2844bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1506700800000
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha 11 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113394.1. On Jan 24, 2004 this sequence version replaced NM_199486.1. ##Evidence-Data-START## Transcript exon combination :: AB113394.1, AY573973.1 [ECO:0000332] ##Evidence-Data-END##

ATGTTCTTTG TCGCCATGAA ATACTGCCAT GGATCTTGGT GCCTGCTGCT CTCACTTTTG 
CTGTTCACAA TCTGGGAGCC TGGGAGCGCC CAGCTCCGCT ACTCCGTCCC AGAGGAGGCC 
AAACACGGCA CCTTCGTGGG ACGCATCGCG CAGGACCTGG GACTGGAGCT GACTGAACTG 
GTGCCCCGTC TGTTCAGGGT GGCATCCAAG GACCGCGGGG ATCTTCTGGA GGTAAATCTG 
CAGAATGGCA TTTTGTTTGT GAATTCTCGG ATCGACCGAG AGGAGCTGTG CGGGAAGAGT 
GCGGAGTGTA GCATCCACTT GGAGGTGATC GTGGACAGAC CGCTGCAGGT TTTCCACGTG 
GAGGTGGAGG TGAAGGACAT TAATGACAAC CCTCCTGTGT TCCCAACCAC ACAAAAGAAT 
CTCTTTGTTT CGGAAACGAG AGCTCTAGAT TCTCGTTTTT CGCTAGAGGG CGCTTCGGAT 
GCAGATATCG GAACCAATGC TCTTCTGACT TACAGACTGA GTCCCAGTGA ATATTTCTCC 
CTAGAAGTAC CAACCACAGA TGAGCTGGTA AAACCACTCG AACTAGTGTT AAAAAAACCT 
TTAGACAGAG AACGAGATTC AGAGCTTCAC TTAGTGGTTA AGGCAACGGA TGGGGGCAAA 
CCTGAGCTCA CAGGCACCTT GGAGTTACAT ATTACAGTTC TAGATGCAAA TGACAACGCG 
CCAGCATTTG ATAGAGCAAT CTATCGGGTA AAACTGGTAG AAAATGCAAG AAATGGTACC 
CTGGTCATTA GACTTAATGC CTCGGATTTG GACGAAGGTT CAAATGGTCA AATTCTTTAT 
TCCTTTGCAG CGGACATTCC CCCTAAGACA GAAGCCACTT TTCATATAGA TCCAGTCAGT 
GGAGAAATTA AAGTCAATGG AAAAATAGAT TTTGAAGAAA CAAATTTATG GAAGATTCAA 
GCAGAAGCAG TTGACGAAGG CAGTCCTCCA ATGTTCGGTC ACTGCACCAT CTTAATTGAA 
GTATTGGACA TCAATGATAA TGCTCCCAAG TTAATAGTAA CGTCATTGTC GCTCCCTATT 
CGAGAGGATG CTCCCGTGGG GACAGTTATT GCCTTAATCA GCGTGACAGA TCCTGACTCT 
ACAGTCAACG GGCAGGTGAC CTGCTCCCTG ACTCCTCAGG TTCCCTTCAA GCTCGTGTCC 
ACCTTCAAGA ATTACTATTC GCTCGTGCTG GACAGCGCTT TGGACCGAGA GACCACAGCT 
GACTTTAAAG TGGTGGTGAC AGCCCGAGAC CGGGGCTCAC CCTCGCTGTG GGACACAGCC 
AGCGTGTCGG TGGAGGTGGC TGACGTGAAC GACAATGCAC CTGCATTCGC GCAGCCTGAA 
TACACGGTGT TCGTGAAGGA GAACAATCCG CCCGGCGCGC ACATCTTCAC GGTGTCCGCG 
GTGGATGCGG ACGCACAAGA GAACGCGCTG GTGTCCTACT CGCTGGTGGA GCGGCGGGTG 
GGCGAGCGCT TGCTGTCGAG CTATGTGTCT GTGCACGCGG AGAGCGGCAA GGTGTTCGCG 
CTGCAGCCTC TGGACCATGA GGAGCTGGAG CTGCTGCAGT TCCAGGTGAG CGCGCGGGAT 
GCTGGTGTGC CTGCCCTGGG CAGCAATGTG ACTCTGCAGG TGTTTGTGCT GGACGAGAAC 
GACAACGCGC CCACGCTGCT GCCTCACGGA GCTGTCGGAG CGGGCGGGGC AGTGAGTGAG 
CTTGTGCCTC GGTCAGTGGG TTCAGGGCAC GTAGTGGCGA AGGTGCGCGC AGTAGATGCC 
GATTCTGGTT ATAATGCTTG GCTGTCTTAT GAGCTCCAAT TCGGAGCTGG CAGTGTGCGC 
AGTCCCTTCC GTGTGGGACT ATACACAGGT GAGATCAGTA TCACTCGCGC CCTGGATGAA 
GTAGATGCGC CGCGCCAGCG CCTGTTGGTC TTGGTGAAGG ATCATGGCGA GCCAGCGTTG 
ACTGCCACAG CCACAGTGCT GGTTTCTCTG ATTGAGAGCA ACCAGGCACC AAAGGCCTCT 
TCACGGGTGT TGGCGGGTAC AGCAGCCTCT GAGTCACCTG TAGTGGATGT CAATGTGTAT 
TTGATCATCG CCATCTGTGC GGTGTCCAGC CTGTTGGTGC TCACACTCGT GTTGTACACT 
GCTCTGCGAT GCTCAGCACT GCCCACTGAG GTCACCTGTG GACCTGGAAA ACCCATGCTG 
GTATGCTCCA GCGCAGTGGG GAGCTGGTCA TACTCTCAGC AAAGGAGGCA GAGGGTGTGC 
TCCGGAGAGG GCCCACCGAA GACCGACCTC ATGGCCTTCA GCCCCAGTGT TCCTCCTGGT 
TTGGGTTCTG GAGATAGTGG TGTCCAGCAA GAAATCTTTG AGAATCCCCG ACAGCCCAAC 
CCTGACTGGC GCTACTCTGC CTCGCTAAGA GCCGGCATGC ACAGCTCTGT GCACCTGGAG 
GAGGCTGGCA TTCTACGGGC TGGTCCAGGA GGGCCTGATC AACAGTGGCC AACAGTATCC 
AGTGCAACAC CAGAACCAGA GGCAGGAGAG GTGTCCCCTC CAGTGGGCGC TGGTGTCAAC 
AGCAACAGCT GGACCTTTAA ATACGGACCC GGCAACCCCA AACAGCCCGG TCCCGGTGAG 
TTGCCAGACA AATTCATTAT CCCAGGATCT CCTGCAATCA TCTCCATCCG GCAGGAGTCT 
GCTAACAACC AAATTGACAA AAGCGATTTT ATAACCTTCG GCAAAAAGGA GGAGACCAAG 
AAAAAGAAGA AAAAGAAGAA GGGTAACAAG ACCCAGGAGA AAAAAGAGAA AGGGAACAGC 
ACGACGGACA ACAGTGACCA GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955780.1
CDS	1..2844
Translation	MFFVAMKYCHGSWCLLLSLLLFTIWEPGSAQLRYSVPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGKSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPVFPTTQKNLFVSETRALDSRFSLEGASDADIGTNALLTYRLSPSEYFSLEVPTTDELVKPLELVLKKPLDRERDSELHLVVKATDGGKPELTGTLELHITVLDANDNAPAFDRAIYRVKLVENARNGTLVIRLNASDLDEGSNGQILYSFAADIPPKTEATFHIDPVSGEIKVNGKIDFEETNLWKIQAEAVDEGSPPMFGHCTILIEVLDINDNAPKLIVTSLSLPIREDAPVGTVIALISVTDPDSTVNGQVTCSLTPQVPFKLVSTFKNYYSLVLDSALDRETTADFKVVVTARDRGSPSLWDTASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPTLLPHGAVGAGGAVSELVPRSVGSGHVVAKVRAVDADSGYNAWLSYELQFGAGSVRSPFRVGLYTGEISITRALDEVDAPRQRLLVLVKDHGEPALTATATVLVSLIESNQAPKASSRVLAGTAASESPVVDVNVYLIIAICAVSSLLVLTLVLYTALRCSALPTEVTCGPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGPPKTDLMAFSPSVPPGLGSGDSGVQQEIFENPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199486.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 11 (Pcdha11), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199486.2

ORF Insert Sequence:

ATGTTCTTTG TCGCCATGAA ATACTGCCAT GGATCTTGGT GCCTGCTGCT CTCACTTTTG 
CTGTTCACAA TCTGGGAGCC TGGGAGCGCC CAGCTCCGCT ACTCCGTCCC AGAGGAGGCC 
AAACACGGCA CCTTCGTGGG ACGCATCGCG CAGGACCTGG GACTGGAGCT GACTGAACTG 
GTGCCCCGTC TGTTCAGGGT GGCATCCAAG GACCGCGGGG ATCTTCTGGA GGTAAATCTG 
CAGAATGGCA TTTTGTTTGT GAATTCTCGG ATCGACCGAG AGGAGCTGTG CGGGAAGAGT 
GCGGAGTGTA GCATCCACTT GGAGGTGATC GTGGACAGAC CGCTGCAGGT TTTCCACGTG 
GAGGTGGAGG TGAAGGACAT TAATGACAAC CCTCCTGTGT TCCCAACCAC ACAAAAGAAT 
CTCTTTGTTT CGGAAACGAG AGCTCTAGAT TCTCGTTTTT CGCTAGAGGG CGCTTCGGAT 
GCAGATATCG GAACCAATGC TCTTCTGACT TACAGACTGA GTCCCAGTGA ATATTTCTCC 
CTAGAAGTAC CAACCACAGA TGAGCTGGTA AAACCACTCG AACTAGTGTT AAAAAAACCT 
TTAGACAGAG AACGAGATTC AGAGCTTCAC TTAGTGGTTA AGGCAACGGA TGGGGGCAAA 
CCTGAGCTCA CAGGCACCTT GGAGTTACAT ATTACAGTTC TAGATGCAAA TGACAACGCG 
CCAGCATTTG ATAGAGCAAT CTATCGGGTA AAACTGGTAG AAAATGCAAG AAATGGTACC 
CTGGTCATTA GACTTAATGC CTCGGATTTG GACGAAGGTT CAAATGGTCA AATTCTTTAT 
TCCTTTGCAG CGGACATTCC CCCTAAGACA GAAGCCACTT TTCATATAGA TCCAGTCAGT 
GGAGAAATTA AAGTCAATGG AAAAATAGAT TTTGAAGAAA CAAATTTATG GAAGATTCAA 
GCAGAAGCAG TTGACGAAGG CAGTCCTCCA ATGTTCGGTC ACTGCACCAT CTTAATTGAA 
GTATTGGACA TCAATGATAA TGCTCCCAAG TTAATAGTAA CGTCATTGTC GCTCCCTATT 
CGAGAGGATG CTCCCGTGGG GACAGTTATT GCCTTAATCA GCGTGACAGA TCCTGACTCT 
ACAGTCAACG GGCAGGTGAC CTGCTCCCTG ACTCCTCAGG TTCCCTTCAA GCTCGTGTCC 
ACCTTCAAGA ATTACTATTC GCTCGTGCTG GACAGCGCTT TGGACCGAGA GACCACAGCT 
GACTTTAAAG TGGTGGTGAC AGCCCGAGAC CGGGGCTCAC CCTCGCTGTG GGACACAGCC 
AGCGTGTCGG TGGAGGTGGC TGACGTGAAC GACAATGCAC CTGCATTCGC GCAGCCTGAA 
TACACGGTGT TCGTGAAGGA GAACAATCCG CCCGGCGCGC ACATCTTCAC GGTGTCCGCG 
GTGGATGCGG ACGCACAAGA GAACGCGCTG GTGTCCTACT CGCTGGTGGA GCGGCGGGTG 
GGCGAGCGCT TGCTGTCGAG CTATGTGTCT GTGCACGCGG AGAGCGGCAA GGTGTTCGCG 
CTGCAGCCTC TGGACCATGA GGAGCTGGAG CTGCTGCAGT TCCAGGTGAG CGCGCGGGAT 
GCTGGTGTGC CTGCCCTGGG CAGCAATGTG ACTCTGCAGG TGTTTGTGCT GGACGAGAAC 
GACAACGCGC CCACGCTGCT GCCTCACGGA GCTGTCGGAG CGGGCGGGGC AGTGAGTGAG 
CTTGTGCCTC GGTCAGTGGG TTCAGGGCAC GTAGTGGCGA AGGTGCGCGC AGTAGATGCC 
GATTCTGGTT ATAATGCTTG GCTGTCTTAT GAGCTCCAAT TCGGAGCTGG CAGTGTGCGC 
AGTCCCTTCC GTGTGGGACT ATACACAGGT GAGATCAGTA TCACTCGCGC CCTGGATGAA 
GTAGATGCGC CGCGCCAGCG CCTGTTGGTC TTGGTGAAGG ATCATGGCGA GCCAGCGTTG 
ACTGCCACAG CCACAGTGCT GGTTTCTCTG ATTGAGAGCA ACCAGGCACC AAAGGCCTCT 
TCACGGGTGT TGGCGGGTAC AGCAGCCTCT GAGTCACCTG TAGTGGATGT CAATGTGTAT 
TTGATCATCG CCATCTGTGC GGTGTCCAGC CTGTTGGTGC TCACACTCGT GTTGTACACT 
GCTCTGCGAT GCTCAGCACT GCCCACTGAG GTCACCTGTG GACCTGGAAA ACCCATGCTG 
GTATGCTCCA GCGCAGTGGG GAGCTGGTCA TACTCTCAGC AAAGGAGGCA GAGGGTGTGC 
TCCGGAGAGG GCCCACCGAA GACCGACCTC ATGGCCTTCA GCCCCAGTGT TCCTCCTGGT 
TTGGGTTCTG GAGATAGTGG TGTCCAGCAA GAAATCTTTG AGAATCCCCG ACAGCCCAAC 
CCTGACTGGC GCTACTCTGC CTCGCTAAGA GCCGGCATGC ACAGCTCTGT GCACCTGGAG 
GAGGCTGGCA TTCTACGGGC TGGTCCAGGA GGGCCTGATC AACAGTGGCC AACAGTATCC 
AGTGCAACAC CAGAACCAGA GGCAGGAGAG GTGTCCCCTC CAGTGGGCGC TGGTGTCAAC 
AGCAACAGCT GGACCTTTAA ATACGGACCC GGCAACCCCA AACAGCCCGG TCCCGGTGAG 
TTGCCAGACA AATTCATTAT CCCAGGATCT CCTGCAATCA TCTCCATCCG GCAGGAGTCT 
GCTAACAACC AAATTGACAA AAGCGATTTT ATAACCTTCG GCAAAAAGGA GGAGACCAAG 
AAAAAGAAGA AAAAGAAGAA GGGTAACAAG ACCCAGGAGA AAAAAGAGAA AGGGAACAGC 
ACGACGGACA ACAGTGACCA GTGA