Xab2 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Xab2
Entrez Gene ID	245976
Full Name	XPA binding protein 2
Synonyms	Ath55
General protein information	Preferred Names XPA binding protein 2 Names pre-mRNA-splicing factor SYF1 adapter protein ATH-55
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 12 Map Location: 12p12
Summary	may play a role in mRNA processing [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_139109.2	NP_620809.1	pre-mRNA-splicing factor SYF1

Pathways from BioSystems

Homologies

Oryza sativa (rice)	Os07g0644300	NP_001060448.1
Drosophila melanogaster (fruit fly)	CG6197	NP_610891.1
Xenopus tropicalis (tropical clawed frog)	xab2	NP_001135604.1
Bos taurus (cattle)	XAB2	NP_001069387.1
Magnaporthe oryzae (rice blast fungus)	MGG_07087	XP_003715277.1
Schizosaccharomyces pombe (fission yeast)	cwf3	NP_596612.1
Neurospora crassa	NCU08036	XP_962706.1
Homo sapiens (human)	XAB2	NP_064581.2
Canis lupus familiaris (dog)	XAB2	XP_542113.3
Rattus norvegicus (Norway rat)	Xab2	NP_620809.1
Arabidopsis thaliana (thale cress)	AT5G28740	NP_198226.1
Pan troglodytes (chimpanzee)	XAB2	XP_003316095.2
Danio rerio (zebrafish)	xab2	NP_001038248.1
Macaca mulatta (Rhesus monkey)	XAB2	XP_001090436.2
Mus musculus (house mouse)	Xab2	NP_080432.1
Caenorhabditis elegans (roundworm)	C50F2.3	NP_491250.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP012369	XP_320187.4

Gene Ontology
Bibliography

Related articles in PubMed

Cryo-EM structure of a human spliceosome activated for step 2 of splicing.
Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, Lührmann R
Nature542(7641)318-323(2017 02)

Splicing and beyond: the many faces of the Prp19 complex.
Chanarat S, Sträßer K
Biochimica et biophysica acta1833(10)2126-34(2013 Oct)

Nucleotide excision repair: new tricks with old bricks.
Kamileri I, Karakasilioti I, Garinis GA
Trends in genetics : TIG28(11)566-73(2012 Nov)

Defining the membrane proteome of NK cells.
Ghosh D, Lippert D, Krokhin O, Cortens JP, Wilkins JA
Journal of mass spectrometry : JMS45(1)1-25(2010 Jan)

Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality.
Yonemasu R, Minami M, Nakatsu Y, Takeuchi M, Kuraoka I, Matsuda Y, Higashi Y, Kondoh H, Tanaka K
DNA repair4(4)479-91(2005 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Xab2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Xab2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa02198	NM_139109.2 Latest version!	Rattus norvegicus XPA binding protein 2 (Xab2), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Xab2 ( NM_139109.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_620809.1 Rattus norvegicus XPA binding protein 2 (Xab2), mRNA.

Price & Availability↑

CloneID	ORa02198
Clone ID Related Accession (Same CDS sequence)	NM_139109.2
Accession Version	NM_139109.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2568bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1571328000000
Organism	Rattus norvegicus(Norway rat)
Product	pre-mRNA-splicing factor SYF1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF277899.1. On Aug 31, 2012 this sequence version replaced NM_139109.1. ##Evidence-Data-START## Transcript exon combination :: AF277899.1, BC081723.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END##

ATGGTGGTGA TGGCGCGAGT TCCGCGTCCC GAGCGGCCGG ATCTTGTTTT TGAGGAAGAA 
GACCTTCCCT ATGAGGAAGA AATCATGAGG AACCAGTTCT CTGTCAAATG CTGGCTCCGC 
TACATCGAGT TCAAACAGGG GGCCCCCAAA CCCCGACTCA ATCAGTTGTA CGAGCGGGCA 
CTGAAACTGC TTCCCTGCAG CTACAAACTC TGGTACCGCT ATCTGAAGGC ACGCCGGGCG 
CAGGTGAAAC ATCGCTGTGT GACTGACCCT GCCTATGAAG ATGTCAACAA CTGCCATGAG 
AGGGCCTTCG TGTTCATGCA CAAGATGCCA CGTCTATGGT TAGACTATTG CCAGTTCCTC 
ATGGACCAGG GCCGAGTCAC ACACACCCGC CGCACCTTTG ACCGCGCCCT CAGGGCACTG 
CCCATCACCC AGCACTCTCG CATCTGGCCC CTGTATCTGC GTTTCCTGCG CTCTCACCCG 
CTGCCTGAGA CTGCTGTGCG AGGCTACCGT CGCTTCCTCA AGCTGAGTCC TGAGAGTGCT 
GAGGAGTACA TCGAGTACCT CAAGTCCAGT GACCGGCTAG ACGAGGCTGC ACAGCGCCTG 
GCCACAGTGG TGAATGACGA GCGCTTTGTG TCCAAGGCTG GTAAATCCAA CTACCAGCTG 
TGGCACGAGC TGTGTGACCT TATCTCCCAG AATCCAGACA AGGTACAGTC TCTCAATGTG 
GATGCCATAA TCCGTGGTGG GCTCACCCGC TTCACCGACC AGCTGGGCAA GCTATGGTGC 
TCCCTGGCAG ACTACTATAT CCGCAGTGGC CACTTTGAAA AGGCTCGGGA TGTGTATGAG 
GAAGCCATCC GCACTGTGAT GACCGTGCGG GACTTCACCC AGGTGTTTGA CAGCTATGCC 
CAATTCGAGG AGAGCATGAT TGCAGCGAAG ATGGAGACTG CCTCTGAACT GGGGCGTGAG 
GAGGAGGATG ATGTGGATCT GGAGCTGCGC CTGGCCCGCT TTGAGCAGCT CATAAGCCGG 
CGGCCCCTGC TTCTCAACAG TGTCCTTCTG CGCCAGAACC CACACCACGT CCACGAGTGG 
CACAAGCGTG TAGCCCTGCA TCAGGGCCGC CCTCGGGAGA TTATCAACAC CTACACAGAG 
GCCGTGCAGA CAGTAGACCC CTTCAAAGCC ACGGGCAAGC CCCACACCCT GTGGGTTGCA 
TTTGCCAAGT TTTATGAAGA CAACGGACAG CTGGACGATG CTCGTGTCAT CCTAGAGAAG 
GCCACCAAGG TGAACTTCAA GCAGGTGGAC GACCTGGCAA GTGTGTGGTG CCAGTGCGGG 
GAGCTGGAGC TCCGGCATGA GAATTACGAT GAGGCATTAA AGCTGCTTCG GAAAGCGACA 
GCTTTGCCTG CCCGCCGGGC TGAGTACTTC GATGGTTCAG AGCCTGTGCA GAACCGTGTA 
TACAAGTCGC TGAAGGTGTG GTCCATGCTT GCCGACCTGG AGGAAAGCTT GGGCACTTTC 
CAGTCAACCA AGGCAGTGTA TGACCGAATC CTGGACCTGC GCATAGCCAC ACCACAGATT 
GTCATTAACT ATGCCATGTT TCTGGAGGAG CACAAGTACT TTGAGGAGAG CTTCAAGGCA 
TATGAGCGTG GCATCTCGCT GTTCAAGTGG CCCAATGTTT CCGACATCTG GAGCACCTAC 
CTGACCAAAT TCATCTCCCG CTACGGGGGC CGCAAGCTGG AGCGTGCACG GGATCTCTTT 
GAGCAGGCAC TAGATGGCTG CCCACCAAAA TATGCCAAGA CTTTATACCT GCTTTACGCA 
CAGCTGGAGG AGGAGTGGGG CCTTGCCCGC CATGCCATGG CTGTGTATGA CCGTGCTACC 
AGGGCAGTGG AGCCAGCCCA GCAGTACGAC ATGTTTAACA TCTACATCAA GCGGGCTGCT 
GAGATCTACG GTGTCACCCA CACTCGCGGC ATCTACCAGA AGGCCATTGA GGTGCTGTCT 
GATGAGCATG CCCGTGAGAT GTGCCTGAGG TTTGCAGACA TGGAGTGCAA GCTCGGCGAG 
ATCGACCGTG CCCGGGCTAT CTACAGCTTC TGCTCCCAGA TCTGTGATCC CCGGACAACT 
GGGGCATTCT GGCAAACGTG GAAGGACTTT GAGGTCCGGC ACGGCAACGA GGACACCATC 
AGGGAGATGC TGAGGATACG GCGGAGTGTG CAGGCCACGT ACAACACTCA GGTCAACTTC 
ATGGCTTCGC AGATGCTCAA GGTGTCGGGC AGTGCCACGG GCACGGTGTC TGACCTGGCT 
CCCGGGCAGA GCGGCATGGA TGACATGAAG TTGCTGGAAC AGAGAGCAGA ACAGCTAGCG 
GCCGAGGCAG AGCGGGACCA GCCCCCCAGG GCCCAGAGCA AGATCTTCTT TGTGAGGAGT 
GATGCATCCA GGGAGGAATT GGCAGAGCTG GCTCAGCAGG CCAACCCTGA GGAAATCCAG 
CTGGGCGAGG ACGAGGACGA GGACGAGATG GACCTGGAAC CCAATGAAGT CCGACTGGAA 
CAGCAGAGTG TGCCAGCTGC TGTGTTCGGG AGCCTAAAGG AAGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_620809.1
CDS	47..2614
Translation	MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED

Target ORF information:

RefSeq Version	NM_139109.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus XPA binding protein 2 (Xab2), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_139109.2

ORF Insert Sequence:

ATGGTGGTGA TGGCGCGAGT TCCGCGTCCC GAGCGGCCGG ATCTTGTTTT TGAGGAAGAA 
GACCTTCCCT ATGAGGAAGA AATCATGAGG AACCAGTTCT CTGTCAAATG CTGGCTCCGC 
TACATCGAGT TCAAACAGGG GGCCCCCAAA CCCCGACTCA ATCAGTTGTA CGAGCGGGCA 
CTGAAACTGC TTCCCTGCAG CTACAAACTC TGGTACCGCT ATCTGAAGGC ACGCCGGGCG 
CAGGTGAAAC ATCGCTGTGT GACTGACCCT GCCTATGAAG ATGTCAACAA CTGCCATGAG 
AGGGCCTTCG TGTTCATGCA CAAGATGCCA CGTCTATGGT TAGACTATTG CCAGTTCCTC 
ATGGACCAGG GCCGAGTCAC ACACACCCGC CGCACCTTTG ACCGCGCCCT CAGGGCACTG 
CCCATCACCC AGCACTCTCG CATCTGGCCC CTGTATCTGC GTTTCCTGCG CTCTCACCCG 
CTGCCTGAGA CTGCTGTGCG AGGCTACCGT CGCTTCCTCA AGCTGAGTCC TGAGAGTGCT 
GAGGAGTACA TCGAGTACCT CAAGTCCAGT GACCGGCTAG ACGAGGCTGC ACAGCGCCTG 
GCCACAGTGG TGAATGACGA GCGCTTTGTG TCCAAGGCTG GTAAATCCAA CTACCAGCTG 
TGGCACGAGC TGTGTGACCT TATCTCCCAG AATCCAGACA AGGTACAGTC TCTCAATGTG 
GATGCCATAA TCCGTGGTGG GCTCACCCGC TTCACCGACC AGCTGGGCAA GCTATGGTGC 
TCCCTGGCAG ACTACTATAT CCGCAGTGGC CACTTTGAAA AGGCTCGGGA TGTGTATGAG 
GAAGCCATCC GCACTGTGAT GACCGTGCGG GACTTCACCC AGGTGTTTGA CAGCTATGCC 
CAATTCGAGG AGAGCATGAT TGCAGCGAAG ATGGAGACTG CCTCTGAACT GGGGCGTGAG 
GAGGAGGATG ATGTGGATCT GGAGCTGCGC CTGGCCCGCT TTGAGCAGCT CATAAGCCGG 
CGGCCCCTGC TTCTCAACAG TGTCCTTCTG CGCCAGAACC CACACCACGT CCACGAGTGG 
CACAAGCGTG TAGCCCTGCA TCAGGGCCGC CCTCGGGAGA TTATCAACAC CTACACAGAG 
GCCGTGCAGA CAGTAGACCC CTTCAAAGCC ACGGGCAAGC CCCACACCCT GTGGGTTGCA 
TTTGCCAAGT TTTATGAAGA CAACGGACAG CTGGACGATG CTCGTGTCAT CCTAGAGAAG 
GCCACCAAGG TGAACTTCAA GCAGGTGGAC GACCTGGCAA GTGTGTGGTG CCAGTGCGGG 
GAGCTGGAGC TCCGGCATGA GAATTACGAT GAGGCATTAA AGCTGCTTCG GAAAGCGACA 
GCTTTGCCTG CCCGCCGGGC TGAGTACTTC GATGGTTCAG AGCCTGTGCA GAACCGTGTA 
TACAAGTCGC TGAAGGTGTG GTCCATGCTT GCCGACCTGG AGGAAAGCTT GGGCACTTTC 
CAGTCAACCA AGGCAGTGTA TGACCGAATC CTGGACCTGC GCATAGCCAC ACCACAGATT 
GTCATTAACT ATGCCATGTT TCTGGAGGAG CACAAGTACT TTGAGGAGAG CTTCAAGGCA 
TATGAGCGTG GCATCTCGCT GTTCAAGTGG CCCAATGTTT CCGACATCTG GAGCACCTAC 
CTGACCAAAT TCATCTCCCG CTACGGGGGC CGCAAGCTGG AGCGTGCACG GGATCTCTTT 
GAGCAGGCAC TAGATGGCTG CCCACCAAAA TATGCCAAGA CTTTATACCT GCTTTACGCA 
CAGCTGGAGG AGGAGTGGGG CCTTGCCCGC CATGCCATGG CTGTGTATGA CCGTGCTACC 
AGGGCAGTGG AGCCAGCCCA GCAGTACGAC ATGTTTAACA TCTACATCAA GCGGGCTGCT 
GAGATCTACG GTGTCACCCA CACTCGCGGC ATCTACCAGA AGGCCATTGA GGTGCTGTCT 
GATGAGCATG CCCGTGAGAT GTGCCTGAGG TTTGCAGACA TGGAGTGCAA GCTCGGCGAG 
ATCGACCGTG CCCGGGCTAT CTACAGCTTC TGCTCCCAGA TCTGTGATCC CCGGACAACT 
GGGGCATTCT GGCAAACGTG GAAGGACTTT GAGGTCCGGC ACGGCAACGA GGACACCATC 
AGGGAGATGC TGAGGATACG GCGGAGTGTG CAGGCCACGT ACAACACTCA GGTCAACTTC 
ATGGCTTCGC AGATGCTCAA GGTGTCGGGC AGTGCCACGG GCACGGTGTC TGACCTGGCT 
CCCGGGCAGA GCGGCATGGA TGACATGAAG TTGCTGGAAC AGAGAGCAGA ACAGCTAGCG 
GCCGAGGCAG AGCGGGACCA GCCCCCCAGG GCCCAGAGCA AGATCTTCTT TGTGAGGAGT 
GATGCATCCA GGGAGGAATT GGCAGAGCTG GCTCAGCAGG CCAACCCTGA GGAAATCCAG 
CTGGGCGAGG ACGAGGACGA GGACGAGATG GACCTGGAAC CCAATGAAGT CCGACTGGAA 
CAGCAGAGTG TGCCAGCTGC TGTGTTCGGG AGCCTAAAGG AAGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Cryo-EM structure of a human spliceosome activated for step 2 of splicing.
Nature542(7641)318-323(2017 02)
Bertram K,Agafonov DE,Liu WT,Dybkov O,Will CL,Hartmuth K,Urlaub H,Kastner B,Stark H,Lührmann R

Splicing and beyond: the many faces of the Prp19 complex.
Biochimica et biophysica acta1833(10)2126-34(2013 Oct)
Chanarat S,Sträßer K

Nucleotide excision repair: new tricks with old bricks.
Trends in genetics : TIG28(11)566-73(2012 Nov)
Kamileri I,Karakasilioti I,Garinis GA

Defining the membrane proteome of NK cells.
Journal of mass spectrometry : JMS45(1)1-25(2010 Jan)
Ghosh D,Lippert D,Krokhin O,Cortens JP,Wilkins JA

Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality.
DNA repair4(4)479-91(2005 Apr)
Yonemasu R,Minami M,Nakatsu Y,Takeuchi M,Kuraoka I,Matsuda Y,Higashi Y,Kondoh H,Tanaka K

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Xab2 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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