ORF » Species Summary » Populus trichocarpa » LOC7477016 cDNA ORF clone

LOC7477016 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7477016 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7477016 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa436994 XM_024609355.1
Latest version!		 Populus trichocarpa 7-hydroxymethyl chlorophyll a reductase, chloroplastic (LOC7477016), mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00
OPa23426 XM_002315565.2
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0010s07270g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC7477016 ( XM_024609355.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024465123.1 Populus trichocarpa 7-hydroxymethyl chlorophyll a reductase, chloroplastic (LOC7477016), mRNA.
    Price & Availability↑
    CloneID OPa436994
    Clone ID Related Accession (Same CDS sequence) XM_024609355.1
    Accession Version XM_024609355.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1374bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product 7-hydroxymethyl chlorophyll a reductase, chloroplastic
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037294.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGATGACTT CAATCTCATG CAAGCTCTCA CTACCAATCA TTTCCTCATC ATCTTCTTCT 
    TCGAACTCCA ATTCCTCAAA GAAGTACTCA GCGAAGGTAA CAAGAGAGGA CTGGAGGCAA 
    CGTTCCAAAC CCATTCCACC AGGTGGCATT TATCCAGCAA AAGACCACTG CAGTCAATGT 
    GGCTTATGTG ATACTTACTA TGTAGCCCAT GTCAAGAATG CTTGTGCTTT TCTAGGTGAT 
    GGAATGTCCA AAATCGAAGG TTTGGAACCT GTAGTCCATG GCAGAGGGAG GAAGGCAGAT 
    TCTTTTGATG AGGCATACTT TGGGGTCCAT GAGGAGCTTT TGTATGCTCG TAAAACAAAG 
    CCTGTTGAAG GAGCTCAATG GACCGGAATA GTGACTTCTA TTGCAATTGA GATGCTGAAA 
    TCTGGCATGG TCGAGGCTGT TATATGTGTA CAGAGTGATC CAGAGGACAG ATTCTCTCCC 
    AGGCCTGTTT TAGCCAGGAC ACCAGATGAA GTTCTAGCAG CAAAAGGAGT CAAGCCAACA 
    CTATCCCCTA ATCTGAATAC CCTTGCACTG GTTGAGGCTG CTGGTGTTAA GCGTCTTCTT 
    TTCTGTGGCG TGGGTTGCCA AGTGCAAGCA TTAAGATCTG TGGAGCACCA TCTGAATTTG 
    GACAAGCTTT ATGTACTGGG CACCAACTGT GTGGATAACG GAACCCGAGA AGGGCTTGAT 
    AAGTTTCTAA AGGCTGCTAG TGATGAACCA GAAACTGTTC TCCATTACGA GTTTATGCAA 
    GACTACAAGG TCCATTTGAA GCACTTGGAT GGCCGTATTG AAGAGGTTCC TTATTTCTGT 
    CTGCCAGCAA ACGAGTTAGT TGATGTTATT GCACCTTCAT GCTATAGCTG CTTCGACTAC 
    ACGAATGCTT TAGCGGATCT GGTGGTTGGA TACATGGGTG TGCCGAAGTA TCCTGGGGTC 
    AGCATGACAC AACATCCACA GTATATTACA GTAAGAAATG AACGAGGAAG AGAAATGATT 
    GGTTTGGTAA AAAACCTATT GGAGATTACC CCAACAATCA ATAGTGGTGA CCGGAGACCA 
    TTTGTTATGG AGACTGTCAA TGCTGATGAT AATGCAAAGC TGGGAAAGGG TCCTTCTCAA 
    CCTCTCCCAA AGTTCATTGG AAATTTTATA GCGTTTTTAC TAAACTTGGT TGGTCCAAAG 
    GGTCTGGAAT TTGCTCGTTA CTCACTAGAC TACCATACCA TCAGAAACTA TTTGTACACA 
    AACCGTACTT GGGGAAAAGA TAGAGCTGAC AGGCACACAC CTTCATACGC GAAGAAAATT 
    GTGGAATCAT ACAACAAGAA TGGTCAGATT GATCTGATGC TACAGAACAA GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024465123.1
    CDS97..1470
    Translation

    Target ORF information:

    RefSeq Version XM_024609355.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa 7-hydroxymethyl chlorophyll a reductase, chloroplastic (LOC7477016), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024609355.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGATGACTT CAATCTCATG CAAGCTCTCA CTACCAATCA TTTCCTCATC ATCTTCTTCT 
    TCGAACTCCA ATTCCTCAAA GAAGTACTCA GCGAAGGTAA CAAGAGAGGA CTGGAGGCAA 
    CGTTCCAAAC CCATTCCACC AGGTGGCATT TATCCAGCAA AAGACCACTG CAGTCAATGT 
    GGCTTATGTG ATACTTACTA TGTAGCCCAT GTCAAGAATG CTTGTGCTTT TCTAGGTGAT 
    GGAATGTCCA AAATCGAAGG TTTGGAACCT GTAGTCCATG GCAGAGGGAG GAAGGCAGAT 
    TCTTTTGATG AGGCATACTT TGGGGTCCAT GAGGAGCTTT TGTATGCTCG TAAAACAAAG 
    CCTGTTGAAG GAGCTCAATG GACCGGAATA GTGACTTCTA TTGCAATTGA GATGCTGAAA 
    TCTGGCATGG TCGAGGCTGT TATATGTGTA CAGAGTGATC CAGAGGACAG ATTCTCTCCC 
    AGGCCTGTTT TAGCCAGGAC ACCAGATGAA GTTCTAGCAG CAAAAGGAGT CAAGCCAACA 
    CTATCCCCTA ATCTGAATAC CCTTGCACTG GTTGAGGCTG CTGGTGTTAA GCGTCTTCTT 
    TTCTGTGGCG TGGGTTGCCA AGTGCAAGCA TTAAGATCTG TGGAGCACCA TCTGAATTTG 
    GACAAGCTTT ATGTACTGGG CACCAACTGT GTGGATAACG GAACCCGAGA AGGGCTTGAT 
    AAGTTTCTAA AGGCTGCTAG TGATGAACCA GAAACTGTTC TCCATTACGA GTTTATGCAA 
    GACTACAAGG TCCATTTGAA GCACTTGGAT GGCCGTATTG AAGAGGTTCC TTATTTCTGT 
    CTGCCAGCAA ACGAGTTAGT TGATGTTATT GCACCTTCAT GCTATAGCTG CTTCGACTAC 
    ACGAATGCTT TAGCGGATCT GGTGGTTGGA TACATGGGTG TGCCGAAGTA TCCTGGGGTC 
    AGCATGACAC AACATCCACA GTATATTACA GTAAGAAATG AACGAGGAAG AGAAATGATT 
    GGTTTGGTAA AAAACCTATT GGAGATTACC CCAACAATCA ATAGTGGTGA CCGGAGACCA 
    TTTGTTATGG AGACTGTCAA TGCTGATGAT AATGCAAAGC TGGGAAAGGG TCCTTCTCAA 
    CCTCTCCCAA AGTTCATTGG AAATTTTATA GCGTTTTTAC TAAACTTGGT TGGTCCAAAG 
    GGTCTGGAAT TTGCTCGTTA CTCACTAGAC TACCATACCA TCAGAAACTA TTTGTACACA 
    AACCGTACTT GGGGAAAAGA TAGAGCTGAC AGGCACACAC CTTCATACGC GAAGAAAATT 
    GTGGAATCAT ACAACAAGAA TGGTCAGATT GATCTGATGC TACAGAACAA GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7477016 ( XM_002315565.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002315601.2 Populus trichocarpa hypothetical protein (POPTR_0010s07270g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa23426
    Clone ID Related Accession (Same CDS sequence) XM_002315565.2
    Accession Version XM_002315565.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1512bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008476). On Dec 16, 2013 this sequence version replaced XM_002315565.1. COMPLETENESS: incomplete on the 5' end. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGACTAAAA ACACGACTCC ATTAATGGTA GTAGTGATGC TCAATGGTGA AACAAAGTTC 
    AAAGCTCCAC TTCCATTGCT TTCTTTCTTT CCCTCCTCAC TCTGTGTTGC TGCCGTGCTA 
    TCCATTATAA TAATAATAAT GATGACTTCA ATCTCATGCA AGCTCTCACT ACCAATCATT 
    TCCTCATCAT CTTCTTCTTC GAACTCCAAT TCCTCAAAGA AGTACTCAGC GAAGGTAACA 
    AGAGAGGACT GGAGGCAACG TTCCAAACCC ATTCCACCAG GTGGCATTTA TCCAGCAAAA 
    GACCACTGCA GTCAATGTGG CTTATGTGAT ACTTACTATG TAGCCCATGT CAAGAATGCT 
    TGTGCTTTTC TAGGTGATGG AATGTCCAAA ATCGAAGGTT TGGAACCTGT AGTCCATGGC 
    AGAGGGAGGA AGGCAGATTC TTTTGATGAG GCATACTTTG GGGTCCATGA GGAGCTTTTG 
    TATGCTCGTA AAACAAAGCC TGTTGAAGGA GCTCAATGGA CCGGAATAGT GACTTCTATT 
    GCAATTGAGA TGCTGAAATC TGGCATGGTC GAGGCTGTTA TATGTGTACA GAGTGATCCA 
    GAGGACAGAT TCTCTCCCAG GCCTGTTTTA GCCAGGACAC CAGATGAAGT TCTAGCAGCA 
    AAAGGAGTCA AGCCAACACT ATCCCCTAAT CTGAATACCC TTGCACTGGT TGAGGCTGCT 
    GGTGTTAAGC GTCTTCTTTT CTGTGGCGTG GGTTGCCAAG TGCAAGCATT AAGATCTGTG 
    GAGCACCATC TGAATTTGGA CAAGCTTTAT GTACTGGGCA CCAACTGTGT GGATAACGGA 
    ACCCGAGAAG GGCTTGATAA GTTTCTAAAG GCTGCTAGTG ATGAACCAGA AACTGTTCTC 
    CATTACGAGT TTATGCAAGA CTACAAGGTC CATTTGAAGC ACTTGGATGG CCGTATTGAA 
    GAGGTTCCTT ATTTCTGTCT GCCAGCAAAC GAGTTAGTTG ATGTTATTGC ACCTTCATGC 
    TATAGCTGCT TCGACTACAC GAATGCTTTA GCGGATCTGG TGGTTGGATA CATGGGTGTG 
    CCGAAGTATC CTGGGGTCAG CATGACACAA CATCCACAGT ATATTACAGT AAGAAATGAA 
    CGAGGAAGAG AAATGATTGG TTTGGTAAAA AACCTATTGG AGATTACCCC AACAATCAAT 
    AGTGGTGACC GGAGACCATT TGTTATGGAG ACTGTCAATG CTGATGATAA TGCAAAGCTG 
    GGAAAGGGTC CTTCTCAACC TCTCCCAAAG TTCATTGGAA ATTTTATAGC GTTTTTACTA 
    AACTTGGTTG GTCCAAAGGG TCTGGAATTT GCTCGTTACT CACTAGACTA CCATACCATC 
    AGAAACTATT TGTACACAAA CCGTACTTGG GGAAAAGATA GAGCTGACAG GCACACACCT 
    TCATACGCGA AGAAAATTGT GGAATCATAC AACAAGAATG GTCAGATTGA TCTGATGCTA 
    CAGAACAAGT GA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002315601.2
    CDS1..1512
    Translation

    Target ORF information:

    RefSeq Version XM_002315565.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0010s07270g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002315565.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGACTAAAA ACACGACTCC ATTAATGGTA GTAGTGATGC TCAATGGTGA AACAAAGTTC 
    AAAGCTCCAC TTCCATTGCT TTCTTTCTTT CCCTCCTCAC TCTGTGTTGC TGCCGTGCTA 
    TCCATTATAA TAATAATAAT GATGACTTCA ATCTCATGCA AGCTCTCACT ACCAATCATT 
    TCCTCATCAT CTTCTTCTTC GAACTCCAAT TCCTCAAAGA AGTACTCAGC GAAGGTAACA 
    AGAGAGGACT GGAGGCAACG TTCCAAACCC ATTCCACCAG GTGGCATTTA TCCAGCAAAA 
    GACCACTGCA GTCAATGTGG CTTATGTGAT ACTTACTATG TAGCCCATGT CAAGAATGCT 
    TGTGCTTTTC TAGGTGATGG AATGTCCAAA ATCGAAGGTT TGGAACCTGT AGTCCATGGC 
    AGAGGGAGGA AGGCAGATTC TTTTGATGAG GCATACTTTG GGGTCCATGA GGAGCTTTTG 
    TATGCTCGTA AAACAAAGCC TGTTGAAGGA GCTCAATGGA CCGGAATAGT GACTTCTATT 
    GCAATTGAGA TGCTGAAATC TGGCATGGTC GAGGCTGTTA TATGTGTACA GAGTGATCCA 
    GAGGACAGAT TCTCTCCCAG GCCTGTTTTA GCCAGGACAC CAGATGAAGT TCTAGCAGCA 
    AAAGGAGTCA AGCCAACACT ATCCCCTAAT CTGAATACCC TTGCACTGGT TGAGGCTGCT 
    GGTGTTAAGC GTCTTCTTTT CTGTGGCGTG GGTTGCCAAG TGCAAGCATT AAGATCTGTG 
    GAGCACCATC TGAATTTGGA CAAGCTTTAT GTACTGGGCA CCAACTGTGT GGATAACGGA 
    ACCCGAGAAG GGCTTGATAA GTTTCTAAAG GCTGCTAGTG ATGAACCAGA AACTGTTCTC 
    CATTACGAGT TTATGCAAGA CTACAAGGTC CATTTGAAGC ACTTGGATGG CCGTATTGAA 
    GAGGTTCCTT ATTTCTGTCT GCCAGCAAAC GAGTTAGTTG ATGTTATTGC ACCTTCATGC 
    TATAGCTGCT TCGACTACAC GAATGCTTTA GCGGATCTGG TGGTTGGATA CATGGGTGTG 
    CCGAAGTATC CTGGGGTCAG CATGACACAA CATCCACAGT ATATTACAGT AAGAAATGAA 
    CGAGGAAGAG AAATGATTGG TTTGGTAAAA AACCTATTGG AGATTACCCC AACAATCAAT 
    AGTGGTGACC GGAGACCATT TGTTATGGAG ACTGTCAATG CTGATGATAA TGCAAAGCTG 
    GGAAAGGGTC CTTCTCAACC TCTCCCAAAG TTCATTGGAA ATTTTATAGC GTTTTTACTA 
    AACTTGGTTG GTCCAAAGGG TCTGGAATTT GCTCGTTACT CACTAGACTA CCATACCATC 
    AGAAACTATT TGTACACAAA CCGTACTTGG GGAAAAGATA GAGCTGACAG GCACACACCT 
    TCATACGCGA AGAAAATTGT GGAATCATAC AACAAGAATG GTCAGATTGA TCTGATGCTA 
    CAGAACAAGT GA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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