PAFC3501 cDNA ORF clone, Ostreococcus lucimarinus CCE9901

Gene
Clones
gRNAs

Summary

Gene Symbol	PAFC3501
Entrez Gene ID	5001313
Full Name	hypothetical protein
Gene Type	protein-coding
Organism	Ostreococcus lucimarinus CCE9901

mRNA and Protein(s)

mRNA	Protein	Name
XM_001417144.1	XP_001417181.1	predicted protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.
Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, Napoli C, Gendler K, Manuell A, Tai V, Vallon O, Piganeau G, Jancek S, Heijde M, Jabbari K, Bowler C, Lohr M, Robbens S, Werner G, Dubchak I, Pazour GJ, Ren Q, Paulsen I, Delwiche C, Schmutz J, Rokhsar D, Van de Peer Y, Moreau H, Grigoriev IV
Proceedings of the National Academy of Sciences of the United States of America104(18)7705-10(2007 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following PAFC3501 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PAFC3501 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OOe01742	XM_001417144.1 Latest version!	Ostreococcus lucimarinus CCE9901 predicted protein (PAFC3501), partial mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$559.30 $799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

PAFC3501 ( XM_001417144.1 ) cDNA ORF clone, Ostreococcus lucimarinus CCE9901 -> XP_001417181.1 Ostreococcus lucimarinus CCE9901 predicted protein (PAFC3501), partial mRNA.

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CloneID	OOe01742
Clone ID Related Accession (Same CDS sequence)	XM_001417144.1
Accession Version	XM_001417144.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3180bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1498060800000
Organism	Ostreococcus lucimarinus CCE9901
Product	predicted protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_009358). COMPLETENESS: incomplete on both ends.

ATGTCGCCGC GAAACGCGGT CGCCGTCGCG CTGCTGAACG ACCCGAACGA ATGCGTCGTC 
GTCGACCTCG ACGCGCTGCC GACGGACGTC GAGGACGTCG CGAGCGTCCT CCAGGCGGAG 
CTCGCGCCGC TCGAGGCGTG GATCGAGGTG ACGGAGGCGT ACCTCAGGCG AGGCGACGCG 
CGAGGGTTCG AGACGCTGAT GGAGATGGTG TGCGCGCCGG AGATCGAGGA GGTGTATAGG 
GAACAAGCGT ACGGACGCGC GGCGGTGCTG TGCCTGTACG CGTCGTATTG GGCGAATAGG 
GCGGCGCGGG AGACGGACGC GGTGAGCCGA GAGGAGGGGT TCATCAAGGC GGGCGCGTAC 
TTGAATCAAG CGGCGGGAAT TCACAGGAAA CCGGAACAGA TCGTGGCGAT CGGACGCGCG 
CACCTGGCGT TCGCGCGCGG GGCGACGGGA GAGGGCGAGA AACTCATCGA CCAGGCGCTC 
GGGCTCAAGG ACGACGGTAG GGATAACATC ACGCCGATGC TGTGGAAGGC GGTTTTATTG 
TATAAGAAGG AGCGCTACCA AGACGCGTTG ACGTGGTACA AACGCGCACT TCGCGCGTTT 
CCTTCCGCGC CCGCACCGGT GCGTTTGGGG ATCGGGGCGT GCCAATACAA GCTGGGCGAC 
TTCAAGACGG CGAAGCTTGC GTTTGCGCGC GTGCTCAAGT TGGATGAGCG CAACGTCGAA 
GCCATGCTCG GTTTGGCGCT GTGCGAATTG AGCTTGCATG ACATTCGTAG TCAGCAACAC 
TTGGATTCCG TAGCTGCGGC CATGCGCCTG CTCGAGCGCG CTTTCATGCA CGACCCTCAC 
AACCAAGCGG TGAACAACGT CATCTCGGAC AATTTGCTCA TGGCGGATGA TTACGAAAAA 
GTAGAGAAAC TCACGCGACT GGCGCTTCAG AACAACGCGG AGACGCCGAG GAACCGAGCG 
AAGGCGGCGT TTAACCAAGC GCGCGCCTTG CACGCCCGAG GACAGGTGCC TCAAGCGCAA 
GCGTTGTACT TGACGGCGAC GAACCTCGAC GAACACTACG TGCCGCCGTA CTTTGGTTTG 
GGTCAAATCG CCCTTGCAAA GGGTGATGTG AAGTTAGCGT GGAACTACAT GGATAAAGCA 
CACGGGGAAT TCGGAGAGTC CATGACCGTG ACTAGAATGT TTGCCCATTT ATGCGCGTCG 
ACTGGTAGAA GCGAGCAGGC GGCGGAGATG TTCCGCGAAG TAGTGAAACA GGGTGGAAAC 
GACGTCGACG CGATGTTAGA ACTCGGAGAA CTCTTAGAGA CTCAAGATCC GAAGGCTGCG 
TTGAAGGCTT ACAGTGCCGC CCTGAAAATG CTAGCTGCCA AGGGTGAAGA AGGGCCAATT 
ACCGCCATCA AGAACAACAT CGGCGTGTTG AACGTTCAGT TGGGCAAATT CGACGAGGCG 
CGCGAGGCGT TCACCGAGGC GCTGCAGGCG CTCGGTGGCG ATGCCGATCA ACTCGAGGGC 
AAACTGAAAG GTGCTAAGGC GAAGAAGGCG TTACAGCCAG GCGTTGCGCC CATCGCGTTC 
AACTTGGCTT TATTAGAGGA ACAGCAAGGA AACAACGCCG CGGCGGAGGC ACGATACGAC 
GCCATCCTCG CCGCGCAACC GGATTACATT GATTCCATCT TGCGTCAAGC GAAAATTCGG 
GCCGAACGGG GCGATTACGA CATGGCGCTC GAACGCACGA ATGAAGCCAT TGCGGCGAAA 
AGTGATAGTG CCGATGCCCT CGCCCTCGCT GGTTGGGTTT TGCTCAAGGC AAAGCGATGG 
AGTGAGGCGG AGCAACAATT CGCCGCGCTG CGCAACTTGC CCAAACCCGA CGCCGCGGCG 
AATGCGAAGG AAAAAACATT GACGCACGAC GAGTATGCGA TGGTAAGCGC GGCGAACGCG 
GCGTATTACA GCGCTATCAA AGAGGGTGTG CTCAAGCGAA ACGATCCCAA GGTGCTCAAG 
CGCGAGGAGG AGCACTACGA ACGGGCTTAC TCGTTGTTCC AAAAGACGCT CCAGAAGAAT 
GGTTCCAACG TCTACGCCGC TAATGGTCTC GGGATTATTC TTGCTGAGCG AGGGCGAATC 
GACGAAGCCA AGACGGTGTT TCAGATCGTG CAAGAAGGCA TGGCTGCGAA AGGCTCAATC 
AACCCGGATA TTCTCATCAA CCAAGGTCAC GTGTACTTGG CCAAGGCGCA ATATGTGCAG 
GCGAGCAAGC TTTACGAGCG CGCTCAAAGC CAGTTCTACT TTAACCAGAA CGAAAATGTC 
ATGCTTTATC AAGCGAGGGC GCATTATGAG AATGGCAACT TGGAAGAAGC GCGCAAGATT 
CTTCGCAAAG CGTTGTTAAT CGCGCCCTGG AACCACAGAA TTCGATTCAA CTTGGCGTAC 
GTCATTCAAG AGATGGCGCA GCGCACGTTG AACAGAACGA TGAAGAGCAC GAGCTCGGAC 
GGACGTTTGG CGCAAGTGGA AAGTGCGATA GAAGACTTGA CCACTGCGCT CAAGCTCTTC 
GAGCAATTGC AAACGCTTGG GAACCAGGCG GAGTTTGGTT TCGACGCCAA ACGCACGAGC 
GTTCACGTGT CCTTCTGCAA GCAAGCGCTC ACCAAGTCCA AACCGCACTT GGAAGCGGCG 
CAGAAGGAAG AGGCTTCGAT CTCTGCAGCG AAAAACGCGC AACTCACCGC GCGCCGCGCG 
ATCGAAGAAG GCCGCGCCGC CCAAAAAGCT GCCGAAGAAC TCGCCAAGGA GACGCACGCC 
AAGGAACTCG AAGCCATCGC TGCGCAGTCT GAGCGTCGCT TCAAAGAAAG CCAAGCGCGA 
TGGATGTCAG AACAAGCTGT CGAGCGACCG ACGAAGAAAG GTGCCAAGGG TCTCGGTGCG 
GCTCCTGTCG GTGAGGCCAC GAGCGATCTT TCCGAAGACG ATGACGAGCC CGCACCCGAG 
ACGCGCGCGC CGCCCACTGC CGAGGAACTC GCGCGTCAGA AAGAAGCCCT CGCGGCGGCC 
GGTTTAGCCG ACAGCGACGA CGAAGACGAA GACGAAGACG AAGACGCGCA ACCGAGCGCC 
GACGTCGAAG CACCGGCAGA AAAGAAGCGT TCCGCTGACG AAACTGACGA AGCCCAAGCT 
GAAGCCGCCG CTCCCAAGCG TCGCCGACGC GCCGTCGTCG ACGACGACGA CGACGAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_001417181.1
CDS	1..3180
Translation	MSPRNAVAVALLNDPNECVVVDLDALPTDVEDVASVLQAELAPLEAWIEVTEAYLRRGDARGFETLMEMVCAPEIEEVYREQAYGRAAVLCLYASYWANRAARETDAVSREEGFIKAGAYLNQAAGIHRKPEQIVAIGRAHLAFARGATGEGEKLIDQALGLKDDGRDNITPMLWKAVLLYKKERYQDALTWYKRALRAFPSAPAPVRLGIGACQYKLGDFKTAKLAFARVLKLDERNVEAMLGLALCELSLHDIRSQQHLDSVAAAMRLLERAFMHDPHNQAVNNVISDNLLMADDYEKVEKLTRLALQNNAETPRNRAKAAFNQARALHARGQVPQAQALYLTATNLDEHYVPPYFGLGQIALAKGDVKLAWNYMDKAHGEFGESMTVTRMFAHLCASTGRSEQAAEMFREVVKQGGNDVDAMLELGELLETQDPKAALKAYSAALKMLAAKGEEGPITAIKNNIGVLNVQLGKFDEAREAFTEALQALGGDADQLEGKLKGAKAKKALQPGVAPIAFNLALLEEQQGNNAAAEARYDAILAAQPDYIDSILRQAKIRAERGDYDMALERTNEAIAAKSDSADALALAGWVLLKAKRWSEAEQQFAALRNLPKPDAAANAKEKTLTHDEYAMVSAANAAYYSAIKEGVLKRNDPKVLKREEEHYERAYSLFQKTLQKNGSNVYAANGLGIILAERGRIDEAKTVFQIVQEGMAAKGSINPDILINQGHVYLAKAQYVQASKLYERAQSQFYFNQNENVMLYQARAHYENGNLEEARKILRKALLIAPWNHRIRFNLAYVIQEMAQRTLNRTMKSTSSDGRLAQVESAIEDLTTALKLFEQLQTLGNQAEFGFDAKRTSVHVSFCKQALTKSKPHLEAAQKEEASISAAKNAQLTARRAIEEGRAAQKAAEELAKETHAKELEAIAAQSERRFKESQARWMSEQAVERPTKKGAKGLGAAPVGEATSDLSEDDDEPAPETRAPPTAEELARQKEALAAAGLADSDDEDEDEDEDAQPSADVEAPAEKKRSADETDEAQAEAAAPKRRRRAVVDDDDDE

Target ORF information:

RefSeq Version	XM_001417144.1
Organism	Ostreococcus lucimarinus CCE9901
Definition	Ostreococcus lucimarinus CCE9901 predicted protein (PAFC3501), partial mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_001417144.1

ORF Insert Sequence:

ATGTCGCCGC GAAACGCGGT CGCCGTCGCG CTGCTGAACG ACCCGAACGA ATGCGTCGTC 
GTCGACCTCG ACGCGCTGCC GACGGACGTC GAGGACGTCG CGAGCGTCCT CCAGGCGGAG 
CTCGCGCCGC TCGAGGCGTG GATCGAGGTG ACGGAGGCGT ACCTCAGGCG AGGCGACGCG 
CGAGGGTTCG AGACGCTGAT GGAGATGGTG TGCGCGCCGG AGATCGAGGA GGTGTATAGG 
GAACAAGCGT ACGGACGCGC GGCGGTGCTG TGCCTGTACG CGTCGTATTG GGCGAATAGG 
GCGGCGCGGG AGACGGACGC GGTGAGCCGA GAGGAGGGGT TCATCAAGGC GGGCGCGTAC 
TTGAATCAAG CGGCGGGAAT TCACAGGAAA CCGGAACAGA TCGTGGCGAT CGGACGCGCG 
CACCTGGCGT TCGCGCGCGG GGCGACGGGA GAGGGCGAGA AACTCATCGA CCAGGCGCTC 
GGGCTCAAGG ACGACGGTAG GGATAACATC ACGCCGATGC TGTGGAAGGC GGTTTTATTG 
TATAAGAAGG AGCGCTACCA AGACGCGTTG ACGTGGTACA AACGCGCACT TCGCGCGTTT 
CCTTCCGCGC CCGCACCGGT GCGTTTGGGG ATCGGGGCGT GCCAATACAA GCTGGGCGAC 
TTCAAGACGG CGAAGCTTGC GTTTGCGCGC GTGCTCAAGT TGGATGAGCG CAACGTCGAA 
GCCATGCTCG GTTTGGCGCT GTGCGAATTG AGCTTGCATG ACATTCGTAG TCAGCAACAC 
TTGGATTCCG TAGCTGCGGC CATGCGCCTG CTCGAGCGCG CTTTCATGCA CGACCCTCAC 
AACCAAGCGG TGAACAACGT CATCTCGGAC AATTTGCTCA TGGCGGATGA TTACGAAAAA 
GTAGAGAAAC TCACGCGACT GGCGCTTCAG AACAACGCGG AGACGCCGAG GAACCGAGCG 
AAGGCGGCGT TTAACCAAGC GCGCGCCTTG CACGCCCGAG GACAGGTGCC TCAAGCGCAA 
GCGTTGTACT TGACGGCGAC GAACCTCGAC GAACACTACG TGCCGCCGTA CTTTGGTTTG 
GGTCAAATCG CCCTTGCAAA GGGTGATGTG AAGTTAGCGT GGAACTACAT GGATAAAGCA 
CACGGGGAAT TCGGAGAGTC CATGACCGTG ACTAGAATGT TTGCCCATTT ATGCGCGTCG 
ACTGGTAGAA GCGAGCAGGC GGCGGAGATG TTCCGCGAAG TAGTGAAACA GGGTGGAAAC 
GACGTCGACG CGATGTTAGA ACTCGGAGAA CTCTTAGAGA CTCAAGATCC GAAGGCTGCG 
TTGAAGGCTT ACAGTGCCGC CCTGAAAATG CTAGCTGCCA AGGGTGAAGA AGGGCCAATT 
ACCGCCATCA AGAACAACAT CGGCGTGTTG AACGTTCAGT TGGGCAAATT CGACGAGGCG 
CGCGAGGCGT TCACCGAGGC GCTGCAGGCG CTCGGTGGCG ATGCCGATCA ACTCGAGGGC 
AAACTGAAAG GTGCTAAGGC GAAGAAGGCG TTACAGCCAG GCGTTGCGCC CATCGCGTTC 
AACTTGGCTT TATTAGAGGA ACAGCAAGGA AACAACGCCG CGGCGGAGGC ACGATACGAC 
GCCATCCTCG CCGCGCAACC GGATTACATT GATTCCATCT TGCGTCAAGC GAAAATTCGG 
GCCGAACGGG GCGATTACGA CATGGCGCTC GAACGCACGA ATGAAGCCAT TGCGGCGAAA 
AGTGATAGTG CCGATGCCCT CGCCCTCGCT GGTTGGGTTT TGCTCAAGGC AAAGCGATGG 
AGTGAGGCGG AGCAACAATT CGCCGCGCTG CGCAACTTGC CCAAACCCGA CGCCGCGGCG 
AATGCGAAGG AAAAAACATT GACGCACGAC GAGTATGCGA TGGTAAGCGC GGCGAACGCG 
GCGTATTACA GCGCTATCAA AGAGGGTGTG CTCAAGCGAA ACGATCCCAA GGTGCTCAAG 
CGCGAGGAGG AGCACTACGA ACGGGCTTAC TCGTTGTTCC AAAAGACGCT CCAGAAGAAT 
GGTTCCAACG TCTACGCCGC TAATGGTCTC GGGATTATTC TTGCTGAGCG AGGGCGAATC 
GACGAAGCCA AGACGGTGTT TCAGATCGTG CAAGAAGGCA TGGCTGCGAA AGGCTCAATC 
AACCCGGATA TTCTCATCAA CCAAGGTCAC GTGTACTTGG CCAAGGCGCA ATATGTGCAG 
GCGAGCAAGC TTTACGAGCG CGCTCAAAGC CAGTTCTACT TTAACCAGAA CGAAAATGTC 
ATGCTTTATC AAGCGAGGGC GCATTATGAG AATGGCAACT TGGAAGAAGC GCGCAAGATT 
CTTCGCAAAG CGTTGTTAAT CGCGCCCTGG AACCACAGAA TTCGATTCAA CTTGGCGTAC 
GTCATTCAAG AGATGGCGCA GCGCACGTTG AACAGAACGA TGAAGAGCAC GAGCTCGGAC 
GGACGTTTGG CGCAAGTGGA AAGTGCGATA GAAGACTTGA CCACTGCGCT CAAGCTCTTC 
GAGCAATTGC AAACGCTTGG GAACCAGGCG GAGTTTGGTT TCGACGCCAA ACGCACGAGC 
GTTCACGTGT CCTTCTGCAA GCAAGCGCTC ACCAAGTCCA AACCGCACTT GGAAGCGGCG 
CAGAAGGAAG AGGCTTCGAT CTCTGCAGCG AAAAACGCGC AACTCACCGC GCGCCGCGCG 
ATCGAAGAAG GCCGCGCCGC CCAAAAAGCT GCCGAAGAAC TCGCCAAGGA GACGCACGCC 
AAGGAACTCG AAGCCATCGC TGCGCAGTCT GAGCGTCGCT TCAAAGAAAG CCAAGCGCGA 
TGGATGTCAG AACAAGCTGT CGAGCGACCG ACGAAGAAAG GTGCCAAGGG TCTCGGTGCG 
GCTCCTGTCG GTGAGGCCAC GAGCGATCTT TCCGAAGACG ATGACGAGCC CGCACCCGAG 
ACGCGCGCGC CGCCCACTGC CGAGGAACTC GCGCGTCAGA AAGAAGCCCT CGCGGCGGCC 
GGTTTAGCCG ACAGCGACGA CGAAGACGAA GACGAAGACG AAGACGCGCA ACCGAGCGCC 
GACGTCGAAG CACCGGCAGA AAAGAAGCGT TCCGCTGACG AAACTGACGA AGCCCAAGCT 
GAAGCCGCCG CTCCCAAGCG TCGCCGACGC GCCGTCGTCG ACGACGACGA CGACGAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.
Proceedings of the National Academy of Sciences of the United States of America104(18)7705-10(2007 May)
Palenik B,Grimwood J,Aerts A,Rouzé P,Salamov A,Putnam N,Dupont C,Jorgensen R,Derelle E,Rombauts S,Zhou K,Otillar R,Merchant SS,Podell S,Gaasterland T,Napoli C,Gendler K,Manuell A,Tai V,Vallon O,Piganeau G,Jancek S,Heijde M,Jabbari K,Bowler C,Lohr M,Robbens S,Werner G,Dubchak I,Pazour GJ,Ren Q,Paulsen I,Delwiche C,Schmutz J,Rokhsar D,Van de Peer Y,Moreau H,Grigoriev IV

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PAFC3501 cDNA ORF clone, Ostreococcus lucimarinus CCE9901

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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