rt cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	rt
Entrez Gene ID	39297
Full Name	rotated abdomen
Synonyms	CG6097,DPOMT1,Dmel\CG6097,POMT1,Rot_abd,Rt,dPOMT1,dPomt1,fs(3)neo1,pomt,roa
General protein information	Preferred Names rotated abdomen Names CG6097 gene product from transcript CG6097-RA CG6097-PA drosophila protein O-mannosyltransferase 1 rt-PA
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3L Map Location: 68C13-68C13\|3-37 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_079301.4	NP_524025.2	rotated abdomen

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP010784	XP_318526.4
Neurospora crassa	NCU09332	XP_963926.2
Magnaporthe oryzae (rice blast fungus)	MGG_04427	XP_003713520.1
Bos taurus (cattle)	POMT1	NP_001073799.1
Mus musculus (house mouse)	Pomt1	NP_660127.1
Gallus gallus (chicken)	POMT1	NP_001025856.1
Eremothecium gossypii	AGOS_ABL085W	NP_982862.2
Homo sapiens (human)	POMT1	NP_009102.3
Pan troglodytes (chimpanzee)	POMT1	NP_001233574.1
Macaca mulatta (Rhesus monkey)	POMT1	XP_002799997.1
Rattus norvegicus (Norway rat)	Pomt1	NP_445858.1
Danio rerio (zebrafish)	pomt1	NP_001041532.2
Saccharomyces cerevisiae (baker's yeast)	PMT4	NP_012677.1
Drosophila melanogaster (fruit fly)	rt	NP_524025.2
Kluyveromyces lactis	KLLA0B03762g	XP_451701.1
Schizosaccharomyces pombe (fission yeast)	ogm4	NP_596807.1
Canis lupus familiaris (dog)	POMT1	XP_849854.1
Xenopus tropicalis (tropical clawed frog)	pomt1	NP_001006756.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following rt gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the rt cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa18260	NM_079301.4 Latest version!	Drosophila melanogaster rotated abdomen (rt), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

rt ( NM_079301.4 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_524025.2 Drosophila melanogaster rotated abdomen (rt), mRNA.

Price & Availability↑

CloneID	OFa18260
Clone ID Related Accession (Same CDS sequence)	NM_079301.4
Accession Version	NM_079301.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2661bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	rotated abdomen
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jul 15, 2014 this sequence version replaced NM_079301.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGTCTGCCA CCTACACCAA TACAATTACA CAGCGCCGCA AGACGGCCAA AGTGAGGCAG 
CAACAACAAC ACCAATGGAC AGGCAGCGAT TTGAGCGGCG AGTCAAACGA AAGACTTCAC 
TTTCGCAGCC GTTCAACAAA CTCGATGCAA CAACACACAG CAATCAGCAA CTCACCTTCA 
CCACTGTGCT GTAACGGCGC TCGTGCTTTA ACAATGCTCA ATTGCTGCGT CGACGTCAAC 
TGTCATTTGA ATGCGCCGCT CCGCGGCAGC GTTAACCGGC ACACGACGCC AACGCCGACC 
CCGACTGCGA CGCCAACGCC GGTAGCGACG CCAAAACAAG CCTCCCCCTC GCCTACCTCC 
GATCGTTCGC GCTCCCTCTC ACGCTCGCCT TCGCCGTCTC GGTCTCGCTC GCTCTCCTGC 
CAAAAACAAA TCGACAAGAA CAGCGCTGGC GCAGCATCCG CAGAAGAGAG AAAAACCGCT 
AATGCGAGTT CGCAGCCATT TACCGTTAAC CTGAGAATCG ATCTCTTCAG TTGGACACTC 
TTTCTCTTGG CCTTCGGCAC GCGTTTTTAC AAGCTGGCAA CGCCGCCGCA CATCGTATTC 
GATGAACTCC ACTACGGCAA GTACATTTCC ATGTACATGC GAAACATTTT CTTCTTCGAT 
CAACATCCAC CGCTGGGCAA ACAGCTGATC GCCGGACTGG TCAGCCTGGC TGGTTACGAT 
GGCAATTACA CCTTTACCCG CATTGGAGAG CCCTATTCCC CGGAAATGCC CATCTTCTGG 
TTCCGATTTC TACCAGCCAT GTGCGGCAGT CTACTGGCCC CCGCCGTTTA CAATCTTTTG 
CTGGAGGCGA AGCTCAGTCG CTGGTCATCC GCTTTGGGTG GCCTGCTTGT GGTCCTGGAC 
AACTCATTGC TGACGCAATC CCGTTTTGTT CTGATGGAAT CAATGCTTCT GCTGGCCACC 
ACGGTGGGCA TCGCCTGTTT GCTACGCTTC CAACGAAGTC GCCTGGGCAG CCTGGAATGG 
TTCTTTACTG GAACGGCAGC TGCCGTCTGT TTGGGAGCCG CCGGAACCGT CAAGTACGTC 
GGATTCTTGG CACTGGGGCT AGCCTTTTAT TTGCTGTGTC GACACCTGTG GCAACTGCTC 
TACGACGCCG GTCTCACCGA TCGCCAGCTA TGGATGCATG CCATAAGTCG CCTGTTAATC 
TTTGTTGGAA TTCCATTGGC GGTCTACTTG GGAGTCTTCT ATATCCACTT CAAGACGCTG 
CACCGGGCTG GACCGCATGA TAGCATCATG ACTAGCGCGT TTCAGGCCTC GTTAGATGGA 
GGATTGGCAT CGATCACAAA AGGACAGCCA TTGGCAGTGG TTCATGGATC CCAAATCACA 
CTACGACACA CCCACGGACG CACCTGTTGG CTGCACTCGC ATGCAGCTGT CTATCCGGTG 
CGGTATCCGG ACAAGAGAGG CTCCTCCCAC CAGCAGCAGG TCACCTGCTA CTCCTTCAAG 
GATGTGAACA ACTGGTGGCT GGTTAAGCGA CCAACAAAGG AGAACCTGGT GGTGGGTGAT 
GAGCCGGATA TCATTCGGCA CGGTGAAATT ATTCAGTTGG TCCATGGAAT TACGAGCCGA 
GCTCTGAACT CACACGATGT GGCTGCGGCA ATGACGCCGC AGTGCCAAGA AGTCAGCTGC 
TACATAGATT ACGAGATCAA AATGGCCGGT GAACTGTTGT GGCGCGTGGA GATTCTGAAT 
CGCGATTCCG AAGGTGACAT TTGGCATGCC ATCAAGTCGG AGGTCCGCCT CGTTCACGTG 
TCCACAGAAG CCTCCTTGAA GTTCAGTGGG CGCCAACTTC CCGAATGGGG TTTCAATCAG 
CACGAGGTGG TGGCGGATCG TGAAAAGGCA ATACATGAGG ATGCCATTTG GAATGTTGAG 
GAGCACCGCT ATACACAGAC TGAGGATCAT CGGGAGCGAG AGCGCCAGAT GCTAACTGCC 
GAGATGATAC CCACAAAGCG GACGCGCATC TCGTTCTGGG CCAAGCTACT GGAGCTACAA 
TCCAAGATGC TGTTCCAAAC GAAGTCAGTG CCAAATCACA TGTACAGCTC GATGCCGCAC 
GAGTGGCCGC TAATGGACAA GGGCATCGCT TATTGGTTGG ACTCACAGTC GAGTGCGCAG 
ATCTATTTGC TGGGAAACAT ACTACTCTGG TACACAGCCA CCATGGGAAT ACTTGTCTAT 
GCCGGATTAC TCGCCTTCTA CGCGATGCGG CGGCAACGTC TTTGCTTTGA TATTTCGGAG 
CAAGAGTGGC AGCGATTCGT ATTAGCTGGT GACACCTTTT TTATGGGCTA CGTGATGCAC 
TATATTCCGT ATTTTTGTGT GGATCGTACA CTCTTCCTGC ACAATTACTT GCCAGCCTTT 
GTGTTTAAGT TACTTTTATT GTGCTTTGTC GTGGAGCATT TGGACTATCT GCTCAGGCGC 
TTCTGCACCG GACGTGGTGT CCATCTGGTG CGCCTTTATC GCCTCATGCT AATCCTGTGG 
CTGGTGGGCG TGCTTAGCAT TTTCTCAAAG TTTATACCAT TCAGTTATGG TGCGAGAAAA 
ATGACTTTAA ATGAGGTTCG CAGTCTTCGA TGGAAGGATA CCTGGGACTT TGTCCTGCAC 
AAGAACCACC ACCTGTACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_524025.2
CDS	439..3099
Translation	MSATYTNTITQRRKTAKVRQQQQHQWTGSDLSGESNERLHFRSRSTNSMQQHTAISNSPSPLCCNGARALTMLNCCVDVNCHLNAPLRGSVNRHTTPTPTPTATPTPVATPKQASPSPTSDRSRSLSRSPSPSRSRSLSCQKQIDKNSAGAASAEERKTANASSQPFTVNLRIDLFSWTLFLLAFGTRFYKLATPPHIVFDELHYGKYISMYMRNIFFFDQHPPLGKQLIAGLVSLAGYDGNYTFTRIGEPYSPEMPIFWFRFLPAMCGSLLAPAVYNLLLEAKLSRWSSALGGLLVVLDNSLLTQSRFVLMESMLLLATTVGIACLLRFQRSRLGSLEWFFTGTAAAVCLGAAGTVKYVGFLALGLAFYLLCRHLWQLLYDAGLTDRQLWMHAISRLLIFVGIPLAVYLGVFYIHFKTLHRAGPHDSIMTSAFQASLDGGLASITKGQPLAVVHGSQITLRHTHGRTCWLHSHAAVYPVRYPDKRGSSHQQQVTCYSFKDVNNWWLVKRPTKENLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAAMTPQCQEVSCYIDYEIKMAGELLWRVEILNRDSEGDIWHAIKSEVRLVHVSTEASLKFSGRQLPEWGFNQHEVVADREKAIHEDAIWNVEEHRYTQTEDHRERERQMLTAEMIPTKRTRISFWAKLLELQSKMLFQTKSVPNHMYSSMPHEWPLMDKGIAYWLDSQSSAQIYLLGNILLWYTATMGILVYAGLLAFYAMRRQRLCFDISEQEWQRFVLAGDTFFMGYVMHYIPYFCVDRTLFLHNYLPAFVFKLLLLCFVVEHLDYLLRRFCTGRGVHLVRLYRLMLILWLVGVLSIFSKFIPFSYGARKMTLNEVRSLRWKDTWDFVLHKNHHLY

Target ORF information:

RefSeq Version	NM_079301.4
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster rotated abdomen (rt), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079301.4

ORF Insert Sequence:

ATGTCTGCCA CCTACACCAA TACAATTACA CAGCGCCGCA AGACGGCCAA AGTGAGGCAG 
CAACAACAAC ACCAATGGAC AGGCAGCGAT TTGAGCGGCG AGTCAAACGA AAGACTTCAC 
TTTCGCAGCC GTTCAACAAA CTCGATGCAA CAACACACAG CAATCAGCAA CTCACCTTCA 
CCACTGTGCT GTAACGGCGC TCGTGCTTTA ACAATGCTCA ATTGCTGCGT CGACGTCAAC 
TGTCATTTGA ATGCGCCGCT CCGCGGCAGC GTTAACCGGC ACACGACGCC AACGCCGACC 
CCGACTGCGA CGCCAACGCC GGTAGCGACG CCAAAACAAG CCTCCCCCTC GCCTACCTCC 
GATCGTTCGC GCTCCCTCTC ACGCTCGCCT TCGCCGTCTC GGTCTCGCTC GCTCTCCTGC 
CAAAAACAAA TCGACAAGAA CAGCGCTGGC GCAGCATCCG CAGAAGAGAG AAAAACCGCT 
AATGCGAGTT CGCAGCCATT TACCGTTAAC CTGAGAATCG ATCTCTTCAG TTGGACACTC 
TTTCTCTTGG CCTTCGGCAC GCGTTTTTAC AAGCTGGCAA CGCCGCCGCA CATCGTATTC 
GATGAACTCC ACTACGGCAA GTACATTTCC ATGTACATGC GAAACATTTT CTTCTTCGAT 
CAACATCCAC CGCTGGGCAA ACAGCTGATC GCCGGACTGG TCAGCCTGGC TGGTTACGAT 
GGCAATTACA CCTTTACCCG CATTGGAGAG CCCTATTCCC CGGAAATGCC CATCTTCTGG 
TTCCGATTTC TACCAGCCAT GTGCGGCAGT CTACTGGCCC CCGCCGTTTA CAATCTTTTG 
CTGGAGGCGA AGCTCAGTCG CTGGTCATCC GCTTTGGGTG GCCTGCTTGT GGTCCTGGAC 
AACTCATTGC TGACGCAATC CCGTTTTGTT CTGATGGAAT CAATGCTTCT GCTGGCCACC 
ACGGTGGGCA TCGCCTGTTT GCTACGCTTC CAACGAAGTC GCCTGGGCAG CCTGGAATGG 
TTCTTTACTG GAACGGCAGC TGCCGTCTGT TTGGGAGCCG CCGGAACCGT CAAGTACGTC 
GGATTCTTGG CACTGGGGCT AGCCTTTTAT TTGCTGTGTC GACACCTGTG GCAACTGCTC 
TACGACGCCG GTCTCACCGA TCGCCAGCTA TGGATGCATG CCATAAGTCG CCTGTTAATC 
TTTGTTGGAA TTCCATTGGC GGTCTACTTG GGAGTCTTCT ATATCCACTT CAAGACGCTG 
CACCGGGCTG GACCGCATGA TAGCATCATG ACTAGCGCGT TTCAGGCCTC GTTAGATGGA 
GGATTGGCAT CGATCACAAA AGGACAGCCA TTGGCAGTGG TTCATGGATC CCAAATCACA 
CTACGACACA CCCACGGACG CACCTGTTGG CTGCACTCGC ATGCAGCTGT CTATCCGGTG 
CGGTATCCGG ACAAGAGAGG CTCCTCCCAC CAGCAGCAGG TCACCTGCTA CTCCTTCAAG 
GATGTGAACA ACTGGTGGCT GGTTAAGCGA CCAACAAAGG AGAACCTGGT GGTGGGTGAT 
GAGCCGGATA TCATTCGGCA CGGTGAAATT ATTCAGTTGG TCCATGGAAT TACGAGCCGA 
GCTCTGAACT CACACGATGT GGCTGCGGCA ATGACGCCGC AGTGCCAAGA AGTCAGCTGC 
TACATAGATT ACGAGATCAA AATGGCCGGT GAACTGTTGT GGCGCGTGGA GATTCTGAAT 
CGCGATTCCG AAGGTGACAT TTGGCATGCC ATCAAGTCGG AGGTCCGCCT CGTTCACGTG 
TCCACAGAAG CCTCCTTGAA GTTCAGTGGG CGCCAACTTC CCGAATGGGG TTTCAATCAG 
CACGAGGTGG TGGCGGATCG TGAAAAGGCA ATACATGAGG ATGCCATTTG GAATGTTGAG 
GAGCACCGCT ATACACAGAC TGAGGATCAT CGGGAGCGAG AGCGCCAGAT GCTAACTGCC 
GAGATGATAC CCACAAAGCG GACGCGCATC TCGTTCTGGG CCAAGCTACT GGAGCTACAA 
TCCAAGATGC TGTTCCAAAC GAAGTCAGTG CCAAATCACA TGTACAGCTC GATGCCGCAC 
GAGTGGCCGC TAATGGACAA GGGCATCGCT TATTGGTTGG ACTCACAGTC GAGTGCGCAG 
ATCTATTTGC TGGGAAACAT ACTACTCTGG TACACAGCCA CCATGGGAAT ACTTGTCTAT 
GCCGGATTAC TCGCCTTCTA CGCGATGCGG CGGCAACGTC TTTGCTTTGA TATTTCGGAG 
CAAGAGTGGC AGCGATTCGT ATTAGCTGGT GACACCTTTT TTATGGGCTA CGTGATGCAC 
TATATTCCGT ATTTTTGTGT GGATCGTACA CTCTTCCTGC ACAATTACTT GCCAGCCTTT 
GTGTTTAAGT TACTTTTATT GTGCTTTGTC GTGGAGCATT TGGACTATCT GCTCAGGCGC 
TTCTGCACCG GACGTGGTGT CCATCTGGTG CGCCTTTATC GCCTCATGCT AATCCTGTGG 
CTGGTGGGCG TGCTTAGCAT TTTCTCAAAG TTTATACCAT TCAGTTATGG TGCGAGAAAA 
ATGACTTTAA ATGAGGTTCG CAGTCTTCGA TGGAAGGATA CCTGGGACTT TGTCCTGCAC 
AAGAACCACC ACCTGTACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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rt cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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