| Gene Symbol | Rrp40 |
| Entrez Gene ID | 319033 |
| Full Name | Ribosomal RNA processing 40 |
| Synonyms | CG31938,Dmel\CG31938,dRrp40 |
| General protein information |
|
| Gene Type | protein-coding |
| Organism | Drosophila melanogaster(fruit fly) |
| Genome |
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Rrp40 cDNA ORF clone, Drosophila melanogaster(fruit fly)
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Gene
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Clones
gRNAs
The following Rrp40 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Rrp40 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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Reference Sequences (Refseq)
CloneID OFa16628 Clone ID Related Accession (Same CDS sequence) NM_001298636.1 , NM_164435.3 Accession Version NM_001298636.1 Latest version! Documents for ORF clone product in default vector Sequence Information ORF Nucleotide Sequence (Length: 699bp)
Protein sequence
SNPVector pcDNA3.1-C-(k)DYK or customized vector 
User ManualClone information Clone Map MSDSTag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags ORF Insert Method CloneEZ™ Seamless cloning technology Insert Structure linear Update Date 1556035200000 Organism Drosophila melanogaster(fruit fly) Product ribosomal RNA processing 40, isoform B Comment Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##
1
61
121
181
241
301
361
421
481
541
601
661ATGAGCGCGA CCAGCACAAT AGTTATGCCC GGTGAGCGAA TTGCGGCCAT TGAGGAGCTG
GCCAAGAGCA AGCGGGTGAT ACTCGGACCG GGACTGCGGC GTCTGGATGA CACGGTGGTG
GCTAGCAAGG CGGGCCCACT TCGACACAAG GAACCCGGCA CCTTCTGGGT GGACAACTAC
CAGAGAAGGT ACATCCCGGC ACGCGGGGAT CTCATTCTGG GCATTGTGCG AGCCAAGGCG
GGCGATCTGT ACCGCGTGGA CATCGGAGCA ACGGACACAG CCTCCATATC GTATCTCGCC
TTTGAGGCGG CCAGCAAGAA GAATCGCCCG GATCTGATCC CCGGTGATCT GATTTACGCG
AGAGTCCTGA ATGCAAGCGC GGACATTGAA CCGGAGCTGG TCTGCGTCAA CTCGGTGGGC
AAAAGTGGCA AACTGGGCGT CCTCACCGAT GGATTCTTCT TCAAGTGCAG CCTGAATCTG
GGAAGGATGC TGCTGCGGGA AAACTGCCCT GTTCTCGCCG CTCTTACCCG GGAACTGCCC
TACGAGATCG CTGTGGGAGT CAACGGCAGG ATATGGTTGA AGGCCCATTC CCTGAAAGAA
ACCGTGGCCC TCGCCAATGC CATTTCAGCG CTGGAGCAAT CGGGATGTGC GGAAATCGAC
AAAATATGTG GCAATCTCGG AGACTTCCTG CAGGCCTAGThe stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq NP_001285565.1 CDS 98..796 Translation 
Target ORF information:
RefSeq Version NM_001298636.1 Organism Drosophila melanogaster(fruit fly) Definition Drosophila melanogaster ribosomal RNA processing 40, transcript variant B (Rrp40), mRNA. Target ORF information:
Epitope DYKDDDDK Bacterial selection AMPR Mammalian selection NeoR Vector pcDNA3.1+/C-(K)DYK 
NM_001298636.1
ORF Insert Sequence:
1
61
121
181
241
301
361
421
481
541
601
661ATGAGCGCGA CCAGCACAAT AGTTATGCCC GGTGAGCGAA TTGCGGCCAT TGAGGAGCTG
GCCAAGAGCA AGCGGGTGAT ACTCGGACCG GGACTGCGGC GTCTGGATGA CACGGTGGTG
GCTAGCAAGG CGGGCCCACT TCGACACAAG GAACCCGGCA CCTTCTGGGT GGACAACTAC
CAGAGAAGGT ACATCCCGGC ACGCGGGGAT CTCATTCTGG GCATTGTGCG AGCCAAGGCG
GGCGATCTGT ACCGCGTGGA CATCGGAGCA ACGGACACAG CCTCCATATC GTATCTCGCC
TTTGAGGCGG CCAGCAAGAA GAATCGCCCG GATCTGATCC CCGGTGATCT GATTTACGCG
AGAGTCCTGA ATGCAAGCGC GGACATTGAA CCGGAGCTGG TCTGCGTCAA CTCGGTGGGC
AAAAGTGGCA AACTGGGCGT CCTCACCGAT GGATTCTTCT TCAAGTGCAG CCTGAATCTG
GGAAGGATGC TGCTGCGGGA AAACTGCCCT GTTCTCGCCG CTCTTACCCG GGAACTGCCC
TACGAGATCG CTGTGGGAGT CAACGGCAGG ATATGGTTGA AGGCCCATTC CCTGAAAGAA
ACCGTGGCCC TCGCCAATGC CATTTCAGCG CTGGAGCAAT CGGGATGTGC GGAAATCGAC
AAAATATGTG GCAATCTCGG AGACTTCCTG CAGGCCTAGThe stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID OFa16628 Clone ID Related Accession (Same CDS sequence) NM_001298636.1 , NM_164435.3 Accession Version NM_164435.3 Latest version! Documents for ORF clone product in default vector Sequence Information ORF Nucleotide Sequence (Length: 699bp)
Protein sequence
SNPVector pcDNA3.1-C-(k)DYK or customized vector User ManualClone information Clone Map MSDSTag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags ORF Insert Method CloneEZ™ Seamless cloning technology Insert Structure linear Update Date 1556035200000 Organism Drosophila melanogaster(fruit fly) Product ribosomal RNA processing 40, isoform A Comment Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_164435.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##
1
61
121
181
241
301
361
421
481
541
601
661ATGAGCGCGA CCAGCACAAT AGTTATGCCC GGTGAGCGAA TTGCGGCCAT TGAGGAGCTG
GCCAAGAGCA AGCGGGTGAT ACTCGGACCG GGACTGCGGC GTCTGGATGA CACGGTGGTG
GCTAGCAAGG CGGGCCCACT TCGACACAAG GAACCCGGCA CCTTCTGGGT GGACAACTAC
CAGAGAAGGT ACATCCCGGC ACGCGGGGAT CTCATTCTGG GCATTGTGCG AGCCAAGGCG
GGCGATCTGT ACCGCGTGGA CATCGGAGCA ACGGACACAG CCTCCATATC GTATCTCGCC
TTTGAGGCGG CCAGCAAGAA GAATCGCCCG GATCTGATCC CCGGTGATCT GATTTACGCG
AGAGTCCTGA ATGCAAGCGC GGACATTGAA CCGGAGCTGG TCTGCGTCAA CTCGGTGGGC
AAAAGTGGCA AACTGGGCGT CCTCACCGAT GGATTCTTCT TCAAGTGCAG CCTGAATCTG
GGAAGGATGC TGCTGCGGGA AAACTGCCCT GTTCTCGCCG CTCTTACCCG GGAACTGCCC
TACGAGATCG CTGTGGGAGT CAACGGCAGG ATATGGTTGA AGGCCCATTC CCTGAAAGAA
ACCGTGGCCC TCGCCAATGC CATTTCAGCG CTGGAGCAAT CGGGATGTGC GGAAATCGAC
AAAATATGTG GCAATCTCGG AGACTTCCTG CAGGCCTAGThe stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq NP_722725.1 CDS 98..796 Translation
Target ORF information:
RefSeq Version NM_164435.3 Organism Drosophila melanogaster(fruit fly) Definition Drosophila melanogaster ribosomal RNA processing 40, transcript variant A (Rrp40), mRNA. Target ORF information:
Epitope DYKDDDDK Bacterial selection AMPR Mammalian selection NeoR Vector pcDNA3.1+/C-(K)DYK NM_164435.3
ORF Insert Sequence:
1
61
121
181
241
301
361
421
481
541
601
661ATGAGCGCGA CCAGCACAAT AGTTATGCCC GGTGAGCGAA TTGCGGCCAT TGAGGAGCTG
GCCAAGAGCA AGCGGGTGAT ACTCGGACCG GGACTGCGGC GTCTGGATGA CACGGTGGTG
GCTAGCAAGG CGGGCCCACT TCGACACAAG GAACCCGGCA CCTTCTGGGT GGACAACTAC
CAGAGAAGGT ACATCCCGGC ACGCGGGGAT CTCATTCTGG GCATTGTGCG AGCCAAGGCG
GGCGATCTGT ACCGCGTGGA CATCGGAGCA ACGGACACAG CCTCCATATC GTATCTCGCC
TTTGAGGCGG CCAGCAAGAA GAATCGCCCG GATCTGATCC CCGGTGATCT GATTTACGCG
AGAGTCCTGA ATGCAAGCGC GGACATTGAA CCGGAGCTGG TCTGCGTCAA CTCGGTGGGC
AAAAGTGGCA AACTGGGCGT CCTCACCGAT GGATTCTTCT TCAAGTGCAG CCTGAATCTG
GGAAGGATGC TGCTGCGGGA AAACTGCCCT GTTCTCGCCG CTCTTACCCG GGAACTGCCC
TACGAGATCG CTGTGGGAGT CAACGGCAGG ATATGGTTGA AGGCCCATTC CCTGAAAGAA
ACCGTGGCCC TCGCCAATGC CATTTCAGCG CTGGAGCAAT CGGGATGTGC GGAAATCGAC
AAAATATGTG GCAATCTCGG AGACTTCCTG CAGGCCTAGThe stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
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PubMed
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,
Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH
Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D
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