ctdp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ctdp1
Entrez Gene ID	442930
Full Name	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
General protein information	Preferred Names CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 Names RNA polymerase II subunit A C-terminal domain phosphatase
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001002873.1	NP_001002873.1	RNA polymerase II subunit A C-terminal domain phosphatase

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Ctdp1	NP_080571.2
Rattus norvegicus (Norway rat)	Ctdp1	NP_001099601.1
Bos taurus (cattle)	CTDP1	XP_003587804.2
Pan troglodytes (chimpanzee)	CTDP1	XP_001144243.2
Canis lupus familiaris (dog)	CTDP1	XP_533365.2
Danio rerio (zebrafish)	ctdp1	NP_001002873.1
Gallus gallus (chicken)	CTDP1	XP_418905.4
Macaca mulatta (Rhesus monkey)	CTDP1	XP_001088601.1
Homo sapiens (human)	CTDP1	NP_004706.3

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Identification of 315 genes essential for early zebrafish development.
Amsterdam A, Nissen RM, Sun Z, Swindell EC, Farrington S, Hopkins N
Proceedings of the National Academy of Sciences of the United States of America101(35)12792-7(2004 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ctdp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ctdp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa32731	NM_001002873.1 Latest version!	Danio rerio CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (ctdp1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ctdp1 ( NM_001002873.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002873.1 Danio rerio CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (ctdp1), mRNA.

Price & Availability↑

CloneID	ODa32731
Clone ID Related Accession (Same CDS sequence)	NM_001002873.1
Accession Version	NM_001002873.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2844bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1542902400000
Organism	Danio rerio(zebrafish)
Product	RNA polymerase II subunit A C-terminal domain phosphatase
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY648724.1. ##Evidence-Data-START## Transcript exon combination :: AY648724.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGAGGAGC CTGCAGACTC CGGCGGCGGT GCGGCAGCAG AGGGCCCCGT GGTGCAGGTG 
ACGGAGATCC GCTGCCCCGC AGGAGCGCGT CCCCTGCGGC TGCTCGAGTG GAAGGTGAAA 
CCCGGAGCTC TGGTCAACGT TGACTCCGTG ATCGCGGTAT GTGCGCCGAT CCCCGCCGAA 
AGCGAGTCCA GAGCGCCCGA AAAGAAGCTC AAGTCGGACC GCGCTGGAGT TGTGCAGGAA 
CTGTGCTGTC AGCTCGGGCA GGTCATCGCG CCTGGAACTG TGATAGCCAA GGTGGAAGAA 
TGCTGTCATC CCATTGTAAT GAAGGGCTTG TGTGCAGAAT GTGGCCAGGA TTTAACTCAA 
ATGCAGAGCA AGAACGGAAA GCAGCAGGCG CCCATCTCTA CAGCGACTGT TTCCATGGTG 
CACAGTGTCC CCGAGCTGAT GGTCAGCTCA GAGCAAGCGG AGCAGATTGG CCGAGAGGAC 
CAGCAAAGAC TTCACAGGAA CAGGAAGTTA GTGCTGATGG TGGATCTGGA CCAAACGCTG 
ATCCACACCA CTGAACAGCA CTGCCAGCGA ATGTCTAACA AGGGAATCTT TCATTTCCAG 
CTAGGACGAG GGGAACCTAT GCTTCACACA CGACTTAGAC CTCACTGCAA AGACTTTCTT 
GAAAAGATCG CCAAACTCTT TGAGCTGCAC GTCTTCACCT TCGGCAGCCG TTTGTACGCT 
CACACTATTG CAGGTTTTTT AGACCCAGAA AAGAAGCTCT TCTCTCATCG GATTTTGTCT 
AGAGACGAAT GCATAGATCC CTTCTCTAAG ACAGGAAACC TCAAAAATTT GTTCCCCTGC 
GGAGACTCCA TGGTGTGCAT CATAGACGAT AGAGAAGATG TATGGAAGTT TGCCCCCAAC 
CTCATCACGG TGAAAAAGTA CATCTACTTC CAGGGCACTG GTGACATCAA CGCCCCGCCA 
GGCTCACGAG AGGCTCAGAT GGCCAAAAAA GGTAATCAGG GCGGACGGAC TGTGGAAGGC 
ACAGAGTCGG GACAAGAGGA ACAGAGAAAT GGCCTTAGAA AATCCAGCAA GGATCATAAA 
ACTGGGCATG AGGAATCGTC CACTTCTTCC ACTGCCACTC AGGGAGCTTC AGCCAATGAA 
AGGACTCACC CCACTGGGGA ACAGCCTAAT GAGAGCGCAG ATTCAGGGGA CAAATGTACT 
GTGAAAACAG AGGCTGAGGG CAGCTCAGGT GTGTCATGTA TCTCAGGTGA AAGTGAAATC 
CCAAATGCTG CTCCTGATGC TGCAGCTGCC AACGACCTGG ATTTTGACCT TTCTAGCGAC 
AGCGAAAGCG AGGGTAAAAT GGTATTATCT GACAGCGATG GTGAGGGAAA GACAGCAGAC 
ACTGGGAAAC CCAAACAAAG AAAAAATGAG GAGTGTAAAA GCAAAGAGGA TGATGGAGAC 
AAACAGAGGA CAGAGGGGGG TGATGATCCA GTAACAGATC CTGAAGGTCT CCGTGATTTG 
GGCAACGGCT GTTCCGACAA AAAGGAAATG GAAACTGAGT CTCAAAACAG CGAACAGTCA 
GGTGTGACTA TGGGGGAAGA GTCTTTAGAT CACAGTATGG AGGATGAGGA TGATGAGGAA 
GAGGAAGACG TAGACCAGGA CGACCACCTC ATTTACTTGG AGGAGATTTT AGTTCGCATT 
CACAATGAGT ATTACTCACG CTATGAGGCC TTCCTTAAGA AAGAGAGTTC AGAAAGTCCG 
GATATACGCA AAATTGTTCC TGAACTGAAG GGCCGTACAC TAGCGGGAAC CACAGTCATT 
TTCAGTGGCC TGTATCCCAC CAACTACCCA ATGGAGCGCA CCAGAGAGTG GTATCATGGC 
AAGGCACTGG GTGCCAAACT TTGCAAGACC CTGGTGCTCA ATGCCAAAGA CCCCAACCGG 
ACCACCCACC TCATTGCTGC TCGTGCAGGT ACAGAGAAAG TTCGTCAAGC TCAGGGTTGT 
AAACATCTCC ATGTGGTAAA TCCTGATTGG TTGTGGGCTT GTTTGGAGCG CTGGGAGCGA 
GTAGAGGAGC AACTCTTTCC TCTCAAAGAG GACTATAACA AATCACACAG GAGCAATAGT 
CCCGGTGCAT TTCTAGACAT CCATGGGTCT GCCCCGAGGC CTCCCTTCCA GGCCCCTCAG 
GTTCAGCCTA AGCCGCTGCC AGCACCCGAA ATGCGGACCT ATGATCCTGT CACTGGCAAA 
CTGATCCGCC GCGGCCCCCA GGCCTCCCGC CCACCTTCAT ACCTTCACTC ACATCCTTCA 
TCATCCATGT CAGCCAAGGG TGATCTCTCA AACCTCAGGT CAGCTCAGGG GTCTCAGCAG 
ACAGATGAGC CTGCAGGATC GAGTCCAGAC GATGAGCAGC CCGGACCTTC GCGCAGAAAA 
CGACAGCCCA GCATGTCGGA AACCATGCCG CTCTACACAC TCTGTAAAGA AGACCTGGAC 
AGCATGGACA AAGAGGTGGA TGACATCCTT GGGGAAGAGA GTGACAATGA AAGCGAGGGG 
AAGGGGAAAG CGGGGAGGAT AGAGGAGGAA GAGGAGGAAG TTCGGCCCCA CACGAGTAAA 
CAGAAGCCTC CAGCAACCGA TCACATCCCA CCATTGGCAG CTGTTGTAGA GGAAACATCC 
CAAACGTCCA CCAGCGAAGT CTGCGTAACG GAGAATGTGC TCAGGGGCCA TAAAAGAAAA 
CTGGAGGAGG CCAGAGAGGA TGAAGATAAG GATGAAGAGG ATGGCGACTC CAGTAAAGAC 
TCCAATGAAG ACGAGGAGGG CAGCAGTTCG GAGGCCGATG AAATGGCTGC TGCGCTGGAG 
GCGGAGCTAA ATGACTTCAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002873.1
CDS	1..2844
Translation	MEEPADSGGGAAAEGPVVQVTEIRCPAGARPLRLLEWKVKPGALVNVDSVIAVCAPIPAESESRAPEKKLKSDRAGVVQELCCQLGQVIAPGTVIAKVEECCHPIVMKGLCAECGQDLTQMQSKNGKQQAPISTATVSMVHSVPELMVSSEQAEQIGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQRMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLFELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLKNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYIYFQGTGDINAPPGSREAQMAKKGNQGGRTVEGTESGQEEQRNGLRKSSKDHKTGHEESSTSSTATQGASANERTHPTGEQPNESADSGDKCTVKTEAEGSSGVSCISGESEIPNAAPDAAAANDLDFDLSSDSESEGKMVLSDSDGEGKTADTGKPKQRKNEECKSKEDDGDKQRTEGGDDPVTDPEGLRDLGNGCSDKKEMETESQNSEQSGVTMGEESLDHSMEDEDDEEEEDVDQDDHLIYLEEILVRIHNEYYSRYEAFLKKESSESPDIRKIVPELKGRTLAGTTVIFSGLYPTNYPMERTREWYHGKALGAKLCKTLVLNAKDPNRTTHLIAARAGTEKVRQAQGCKHLHVVNPDWLWACLERWERVEEQLFPLKEDYNKSHRSNSPGAFLDIHGSAPRPPFQAPQVQPKPLPAPEMRTYDPVTGKLIRRGPQASRPPSYLHSHPSSSMSAKGDLSNLRSAQGSQQTDEPAGSSPDDEQPGPSRRKRQPSMSETMPLYTLCKEDLDSMDKEVDDILGEESDNESEGKGKAGRIEEEEEEVRPHTSKQKPPATDHIPPLAAVVEETSQTSTSEVCVTENVLRGHKRKLEEAREDEDKDEEDGDSSKDSNEDEEGSSSEADEMAAALEAELNDFM

Target ORF information:

RefSeq Version	NM_001002873.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (ctdp1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002873.1

ORF Insert Sequence:

ATGGAGGAGC CTGCAGACTC CGGCGGCGGT GCGGCAGCAG AGGGCCCCGT GGTGCAGGTG 
ACGGAGATCC GCTGCCCCGC AGGAGCGCGT CCCCTGCGGC TGCTCGAGTG GAAGGTGAAA 
CCCGGAGCTC TGGTCAACGT TGACTCCGTG ATCGCGGTAT GTGCGCCGAT CCCCGCCGAA 
AGCGAGTCCA GAGCGCCCGA AAAGAAGCTC AAGTCGGACC GCGCTGGAGT TGTGCAGGAA 
CTGTGCTGTC AGCTCGGGCA GGTCATCGCG CCTGGAACTG TGATAGCCAA GGTGGAAGAA 
TGCTGTCATC CCATTGTAAT GAAGGGCTTG TGTGCAGAAT GTGGCCAGGA TTTAACTCAA 
ATGCAGAGCA AGAACGGAAA GCAGCAGGCG CCCATCTCTA CAGCGACTGT TTCCATGGTG 
CACAGTGTCC CCGAGCTGAT GGTCAGCTCA GAGCAAGCGG AGCAGATTGG CCGAGAGGAC 
CAGCAAAGAC TTCACAGGAA CAGGAAGTTA GTGCTGATGG TGGATCTGGA CCAAACGCTG 
ATCCACACCA CTGAACAGCA CTGCCAGCGA ATGTCTAACA AGGGAATCTT TCATTTCCAG 
CTAGGACGAG GGGAACCTAT GCTTCACACA CGACTTAGAC CTCACTGCAA AGACTTTCTT 
GAAAAGATCG CCAAACTCTT TGAGCTGCAC GTCTTCACCT TCGGCAGCCG TTTGTACGCT 
CACACTATTG CAGGTTTTTT AGACCCAGAA AAGAAGCTCT TCTCTCATCG GATTTTGTCT 
AGAGACGAAT GCATAGATCC CTTCTCTAAG ACAGGAAACC TCAAAAATTT GTTCCCCTGC 
GGAGACTCCA TGGTGTGCAT CATAGACGAT AGAGAAGATG TATGGAAGTT TGCCCCCAAC 
CTCATCACGG TGAAAAAGTA CATCTACTTC CAGGGCACTG GTGACATCAA CGCCCCGCCA 
GGCTCACGAG AGGCTCAGAT GGCCAAAAAA GGTAATCAGG GCGGACGGAC TGTGGAAGGC 
ACAGAGTCGG GACAAGAGGA ACAGAGAAAT GGCCTTAGAA AATCCAGCAA GGATCATAAA 
ACTGGGCATG AGGAATCGTC CACTTCTTCC ACTGCCACTC AGGGAGCTTC AGCCAATGAA 
AGGACTCACC CCACTGGGGA ACAGCCTAAT GAGAGCGCAG ATTCAGGGGA CAAATGTACT 
GTGAAAACAG AGGCTGAGGG CAGCTCAGGT GTGTCATGTA TCTCAGGTGA AAGTGAAATC 
CCAAATGCTG CTCCTGATGC TGCAGCTGCC AACGACCTGG ATTTTGACCT TTCTAGCGAC 
AGCGAAAGCG AGGGTAAAAT GGTATTATCT GACAGCGATG GTGAGGGAAA GACAGCAGAC 
ACTGGGAAAC CCAAACAAAG AAAAAATGAG GAGTGTAAAA GCAAAGAGGA TGATGGAGAC 
AAACAGAGGA CAGAGGGGGG TGATGATCCA GTAACAGATC CTGAAGGTCT CCGTGATTTG 
GGCAACGGCT GTTCCGACAA AAAGGAAATG GAAACTGAGT CTCAAAACAG CGAACAGTCA 
GGTGTGACTA TGGGGGAAGA GTCTTTAGAT CACAGTATGG AGGATGAGGA TGATGAGGAA 
GAGGAAGACG TAGACCAGGA CGACCACCTC ATTTACTTGG AGGAGATTTT AGTTCGCATT 
CACAATGAGT ATTACTCACG CTATGAGGCC TTCCTTAAGA AAGAGAGTTC AGAAAGTCCG 
GATATACGCA AAATTGTTCC TGAACTGAAG GGCCGTACAC TAGCGGGAAC CACAGTCATT 
TTCAGTGGCC TGTATCCCAC CAACTACCCA ATGGAGCGCA CCAGAGAGTG GTATCATGGC 
AAGGCACTGG GTGCCAAACT TTGCAAGACC CTGGTGCTCA ATGCCAAAGA CCCCAACCGG 
ACCACCCACC TCATTGCTGC TCGTGCAGGT ACAGAGAAAG TTCGTCAAGC TCAGGGTTGT 
AAACATCTCC ATGTGGTAAA TCCTGATTGG TTGTGGGCTT GTTTGGAGCG CTGGGAGCGA 
GTAGAGGAGC AACTCTTTCC TCTCAAAGAG GACTATAACA AATCACACAG GAGCAATAGT 
CCCGGTGCAT TTCTAGACAT CCATGGGTCT GCCCCGAGGC CTCCCTTCCA GGCCCCTCAG 
GTTCAGCCTA AGCCGCTGCC AGCACCCGAA ATGCGGACCT ATGATCCTGT CACTGGCAAA 
CTGATCCGCC GCGGCCCCCA GGCCTCCCGC CCACCTTCAT ACCTTCACTC ACATCCTTCA 
TCATCCATGT CAGCCAAGGG TGATCTCTCA AACCTCAGGT CAGCTCAGGG GTCTCAGCAG 
ACAGATGAGC CTGCAGGATC GAGTCCAGAC GATGAGCAGC CCGGACCTTC GCGCAGAAAA 
CGACAGCCCA GCATGTCGGA AACCATGCCG CTCTACACAC TCTGTAAAGA AGACCTGGAC 
AGCATGGACA AAGAGGTGGA TGACATCCTT GGGGAAGAGA GTGACAATGA AAGCGAGGGG 
AAGGGGAAAG CGGGGAGGAT AGAGGAGGAA GAGGAGGAAG TTCGGCCCCA CACGAGTAAA 
CAGAAGCCTC CAGCAACCGA TCACATCCCA CCATTGGCAG CTGTTGTAGA GGAAACATCC 
CAAACGTCCA CCAGCGAAGT CTGCGTAACG GAGAATGTGC TCAGGGGCCA TAAAAGAAAA 
CTGGAGGAGG CCAGAGAGGA TGAAGATAAG GATGAAGAGG ATGGCGACTC CAGTAAAGAC 
TCCAATGAAG ACGAGGAGGG CAGCAGTTCG GAGGCCGATG AAATGGCTGC TGCGCTGGAG 
GCGGAGCTAA ATGACTTCAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Identification of 315 genes essential for early zebrafish development.
Proceedings of the National Academy of Sciences of the United States of America101(35)12792-7(2004 Aug)
Amsterdam A,Nissen RM,Sun Z,Swindell EC,Farrington S,Hopkins N

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ctdp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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