vipas39 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	vipas39
Entrez Gene ID	415096
Full Name	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Synonyms	hSPE-39,si:ch211-20b12.1,spe39,vipar,wu:fb63f10
General protein information	Preferred Names VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog Names spermatogenesis-defective protein 39 homolog VPS33B-interacting protein in apical-basolateral polarity regulator VPS33B-interacting protein in polarity and apical restriction protein spe-39 homolog
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001001836.1	NP_001001836.1	spermatogenesis-defective protein 39 homolog

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	VIPAS39	XP_001164738.1
Mus musculus (house mouse)	Vipas39	NP_001136053.1
Xenopus tropicalis (tropical clawed frog)	vipas39	NP_001120552.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP001233	XP_321923.5
Homo sapiens (human)	VIPAS39	NP_001180243.1
Macaca mulatta (Rhesus monkey)	VIPAS39	XP_001102980.1
Gallus gallus (chicken)	VIPAR	XP_004941895.1
Canis lupus familiaris (dog)	VIPAS39	XP_005623764.1
Bos taurus (cattle)	VIPAS39	NP_001091469.1
Rattus norvegicus (Norway rat)	Vipas39	NP_001094474.1
Drosophila melanogaster (fruit fly)	Vps16B	NP_651731.1
Danio rerio (zebrafish)	vipas39	NP_001001836.1

Gene Ontology
Bibliography

Related articles in PubMed

Mutations in VIPAR cause an arthrogryposis, renal dysfunction and cholestasis syndrome phenotype with defects in epithelial polarization.
Cullinane AR, Straatman-Iwanowska A, Zaucker A, Wakabayashi Y, Bruce CK, Luo G, Rahman F, Gürakan F, Utine E, Ozkan TB, Denecke J, Vukovic J, Di Rocco M, Mandel H, Cangul H, Matthews RP, Thomas SG, Rappoport JZ, Arias IM, Wolburg H, Knisely AS, Kelly DA, Müller F, Maher ER, Gissen P
Nature genetics42(4)303-12(2010 Apr)

The zebrafish gene map defines ancestral vertebrate chromosomes.
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS
Genome research15(9)1307-14(2005 Sep)

Hematopoietic gene expression profile in zebrafish kidney marrow.
Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT, Chen Z
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following vipas39 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the vipas39 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa38522	NM_001001836.1 Latest version!	Danio rerio VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog (vipas39), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

vipas39 ( NM_001001836.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001001836.1 Danio rerio VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog (vipas39), mRNA.

Price & Availability↑

CloneID	ODa38522
Clone ID Related Accession (Same CDS sequence)	NM_001001836.1
Accession Version	NM_001001836.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1452bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1529596800000
Organism	Danio rerio(zebrafish)
Product	spermatogenesis-defective protein 39 homolog
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY394945.1. ##Evidence-Data-START## Transcript exon combination :: AY394945.1, BC097010.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGACACGAG CCAAACCTGA GGATGATGAG TACTGGAACA GCTCCAAATT CAAAGCCTTC 
ACCTTCGATG ATGAAGACGA TGAGTTTTCA CGGCTGAAAG AGTCCAAACG GGCAGTGAAC 
AGCATCCTGG TAGATGATGA TGATGATGAA GACGATGTTG AGAAAGTGAG CTGGAGCGGG 
GAACCTGTGG GAAGCATCTC TTGGTCAGTG AGGGAAACTG CCTCCAGTAT CCGCTCTGGG 
AGTGAGCAGA ACTTTCCCAA AATCGATACC GCCCCTTCAC TGTCCAAACA GGGCTCTGGA 
TACTCCCTGA GCTCGCTGTT TAAAGCCAAG AGCAAACCTA CTGCTTTCCA GTCCTTCTCC 
GAATCTTTTA GTGAAACATC TGCTAGAACA TACGCACCTG AGCTGAGGAA GCCCAAGTCT 
GATGGAAAGG ATTTTGTGAG TGATCTGAGT CCAGAGGAAA CCATTAGGAG AATGCAGAAA 
GGACGGGCTT TTTCTATGGA AAAGTTCCGC TCTCTGCAGG ACAAGCTTCT GCTGCTGGAT 
GAAGCCGTTT CTGTTTATGA TGGCAATGTC ATCACTGCTG TCTTGATATA TTTAAAAAAG 
TCATTAAGTA AAGAAATCCT CTTTCGAGAG TTAATGCCGA GAGACGTGGC TTTACGTCAT 
TACATCCACT ATTTGAAAGA GATGGGAGAG CAAAAGCTGT TGGTGGAGTT ACTGAAGGCT 
CTTGGCAGGA CAGAAGATAT GGCGTTAATG CAATACAAAG AGCACTTGAA TATTAAGGAT 
GAAGGCAGAA GAAGAGACTT TCTCAAAAGT TGCCTCAGCC TTCCTTTTTC TCAAGACGAT 
TCCACTCATG TTCAAGATCA CTATACCCTC CTTGAAAGGC AAATAATCAT TGAGGCTAGT 
GACAAGAAGG CAGATACAGA CATCTTTAAA AAGTTCCCCA GAAAAGCGTC CATCCTTAAT 
ATGCCAATCA TCACCACTCT GTATTACTCC TGCTTCTACC ATTACGGAGA GCCAGAGGGA 
ACTTTTAGCA GCCCTTCGAA CATTAGAAAA ACCTTCAGGA TTTCAGAAAA GCAGTACATT 
ACCACAGCTC TTGGTGCGAG AGCAAAGTTG AAATCGTGGT TTGATGTGGA TAGTCTGTTT 
AACACCAAGA ACTGGCTGGG CTACACCAAG AAAAGATCTC CCATCGCCTT TCACAGAGTG 
GTGGACATCC TGCAAAAGAA CAGTGCCCCT GTGCAGGTGC TGCAGGAGTA TGTGAACCTC 
ATCGATGACC CAGAGCTCAA GCTCAGTGTG GCGCTCAAAT ATAAATGCCA TGACATCATC 
ATCAATACAT ACAGAGACCT AAAGGATCGA CAGCAGCTGA TAGTGTACAG AGAAAAGCTA 
GAGCGAGACT CACCTGAATA CAGGAAGATT CAGGAACTCC TCAACAACGG GCAAATCAGA 
TGGAAAAACT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001001836.1
CDS	31..1482
Translation	MTRAKPEDDEYWNSSKFKAFTFDDEDDEFSRLKESKRAVNSILVDDDDDEDDVEKVSWSGEPVGSISWSVRETASSIRSGSEQNFPKIDTAPSLSKQGSGYSLSSLFKAKSKPTAFQSFSESFSETSARTYAPELRKPKSDGKDFVSDLSPEETIRRMQKGRAFSMEKFRSLQDKLLLLDEAVSVYDGNVITAVLIYLKKSLSKEILFRELMPRDVALRHYIHYLKEMGEQKLLVELLKALGRTEDMALMQYKEHLNIKDEGRRRDFLKSCLSLPFSQDDSTHVQDHYTLLERQIIIEASDKKADTDIFKKFPRKASILNMPIITTLYYSCFYHYGEPEGTFSSPSNIRKTFRISEKQYITTALGARAKLKSWFDVDSLFNTKNWLGYTKKRSPIAFHRVVDILQKNSAPVQVLQEYVNLIDDPELKLSVALKYKCHDIIINTYRDLKDRQQLIVYREKLERDSPEYRKIQELLNNGQIRWKN

Target ORF information:

RefSeq Version	NM_001001836.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog (vipas39), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001001836.1

ORF Insert Sequence:

ATGACACGAG CCAAACCTGA GGATGATGAG TACTGGAACA GCTCCAAATT CAAAGCCTTC 
ACCTTCGATG ATGAAGACGA TGAGTTTTCA CGGCTGAAAG AGTCCAAACG GGCAGTGAAC 
AGCATCCTGG TAGATGATGA TGATGATGAA GACGATGTTG AGAAAGTGAG CTGGAGCGGG 
GAACCTGTGG GAAGCATCTC TTGGTCAGTG AGGGAAACTG CCTCCAGTAT CCGCTCTGGG 
AGTGAGCAGA ACTTTCCCAA AATCGATACC GCCCCTTCAC TGTCCAAACA GGGCTCTGGA 
TACTCCCTGA GCTCGCTGTT TAAAGCCAAG AGCAAACCTA CTGCTTTCCA GTCCTTCTCC 
GAATCTTTTA GTGAAACATC TGCTAGAACA TACGCACCTG AGCTGAGGAA GCCCAAGTCT 
GATGGAAAGG ATTTTGTGAG TGATCTGAGT CCAGAGGAAA CCATTAGGAG AATGCAGAAA 
GGACGGGCTT TTTCTATGGA AAAGTTCCGC TCTCTGCAGG ACAAGCTTCT GCTGCTGGAT 
GAAGCCGTTT CTGTTTATGA TGGCAATGTC ATCACTGCTG TCTTGATATA TTTAAAAAAG 
TCATTAAGTA AAGAAATCCT CTTTCGAGAG TTAATGCCGA GAGACGTGGC TTTACGTCAT 
TACATCCACT ATTTGAAAGA GATGGGAGAG CAAAAGCTGT TGGTGGAGTT ACTGAAGGCT 
CTTGGCAGGA CAGAAGATAT GGCGTTAATG CAATACAAAG AGCACTTGAA TATTAAGGAT 
GAAGGCAGAA GAAGAGACTT TCTCAAAAGT TGCCTCAGCC TTCCTTTTTC TCAAGACGAT 
TCCACTCATG TTCAAGATCA CTATACCCTC CTTGAAAGGC AAATAATCAT TGAGGCTAGT 
GACAAGAAGG CAGATACAGA CATCTTTAAA AAGTTCCCCA GAAAAGCGTC CATCCTTAAT 
ATGCCAATCA TCACCACTCT GTATTACTCC TGCTTCTACC ATTACGGAGA GCCAGAGGGA 
ACTTTTAGCA GCCCTTCGAA CATTAGAAAA ACCTTCAGGA TTTCAGAAAA GCAGTACATT 
ACCACAGCTC TTGGTGCGAG AGCAAAGTTG AAATCGTGGT TTGATGTGGA TAGTCTGTTT 
AACACCAAGA ACTGGCTGGG CTACACCAAG AAAAGATCTC CCATCGCCTT TCACAGAGTG 
GTGGACATCC TGCAAAAGAA CAGTGCCCCT GTGCAGGTGC TGCAGGAGTA TGTGAACCTC 
ATCGATGACC CAGAGCTCAA GCTCAGTGTG GCGCTCAAAT ATAAATGCCA TGACATCATC 
ATCAATACAT ACAGAGACCT AAAGGATCGA CAGCAGCTGA TAGTGTACAG AGAAAAGCTA 
GAGCGAGACT CACCTGAATA CAGGAAGATT CAGGAACTCC TCAACAACGG GCAAATCAGA 
TGGAAAAACT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Mutations in VIPAR cause an arthrogryposis, renal dysfunction and cholestasis syndrome phenotype with defects in epithelial polarization.
Nature genetics42(4)303-12(2010 Apr)
Cullinane AR,Straatman-Iwanowska A,Zaucker A,Wakabayashi Y,Bruce CK,Luo G,Rahman F,Gürakan F,Utine E,Ozkan TB,Denecke J,Vukovic J,Di Rocco M,Mandel H,Cangul H,Matthews RP,Thomas SG,Rappoport JZ,Arias IM,Wolburg H,Knisely AS,Kelly DA,Müller F,Maher ER,Gissen P

The zebrafish gene map defines ancestral vertebrate chromosomes.
Genome research15(9)1307-14(2005 Sep)
Woods IG,Wilson C,Friedlander B,Chang P,Reyes DK,Nix R,Kelly PD,Chu F,Postlethwait JH,Talbot WS

Hematopoietic gene expression profile in zebrafish kidney marrow.
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)
Song HD,Sun XJ,Deng M,Zhang GW,Zhou Y,Wu XY,Sheng Y,Chen Y,Ruan Z,Jiang CL,Fan HY,Zon LI,Kanki JP,Liu TX,Look AT,Chen Z

REQUEST A QUOTE

EMAIL

gene@genscript.com

PHONE

1-877-436-7274

ONLINE FORM

Online Quote Submission

ONLINE FORM

Online Quote Submission

vipas39 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Most Popular Services

Services & Products

News & Blogs

REQUEST A QUOTE

EMAIL

PHONE

ONLINE FORM

ONLINE FORM