| Gene Symbol | LOC542089 |
| Entrez Gene ID | 542089 |
| Full Name | Histone-lysine N-methyltransferase H3 lysine-9 specific SUVH4 |
| Synonyms | GRMZM2G054380,SET118 |
| Gene Type | protein-coding |
| Organism | Zea mays |
IVD Raw Materials
ORF » Species Summary » Zea mays » LOC542089 cDNA ORF clone
| mRNA | Protein | Name |
|---|---|---|
| XM_008657201.2 | XP_008655423.1 | uncharacterized protein LOC542089 isoform X1 |
| XM_008657203.2 | XP_008655425.1 | uncharacterized protein LOC542089 isoform X3 |
| XM_020542328.1 | XP_020397917.1 | uncharacterized protein LOC542089 isoform X2 |
| NM_001111722.1 | NP_001105192.1 | uncharacterized protein LOC542089 |
Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots.
Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM
Plant physiology132(2)907-25(2003 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC542089 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC542089 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OZa05497 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008657203.2 , NM_001111722.1 | |
| Accession Version | NM_001111722.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2091bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1551628800000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC542089 | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY122271.1. ##Evidence-Data-START## Transcript exon combination :: AY122271.1, SRR3147023.10137.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGGCGAATA TGGATTCGGT TGTTGTGATG GAGGTGGCGC CGGTGCCGAT CCCGACGTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001105192.1 |
| CDS | 67..2157 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001111722.1 |
1 | ATGGCGAATA TGGATTCGGT TGTTGTGATG GAGGTGGCGC CGGTGCCGAT CCCGACGTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa05497 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008657203.2 , NM_001111722.1 | |
| Accession Version | XM_008657203.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2091bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1513440000000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC542089 isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008657203.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCGAATA TGGATTCGGT TGTTGTGATG GAGGTGGCGC CGGTGCCGAT CCCGACGTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008655425.1 |
| CDS | 134..2224 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008657203.2 |
1 | ATGGCGAATA TGGATTCGGT TGTTGTGATG GAGGTGGCGC CGGTGCCGAT CCCGACGTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa22420 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008657201.2 | |
| Accession Version | XM_008657201.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2310bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1513440000000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC542089 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008657201.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCGGCG CGTACCCTGT CCTGCCTACT TTGCTCTGCT CTCGACGCTT TGCTCTCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008655423.1 |
| CDS | 16..2325 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008657201.2 |
1 | ATGCGCGGCG CGTACCCTGT CCTGCCTACT TTGCTCTGCT CTCGACGCTT TGCTCTCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa65023 | |
| Clone ID Related Accession (Same CDS sequence) | XM_020542328.1 | |
| Accession Version | XM_020542328.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2130bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1513440000000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC542089 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCGGCG CGTACCCTGT CCTGCCTACT TTGCTCTGCT CTCGACGCTT TGCTCTCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020397917.1 |
| CDS | 16..2145 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_020542328.1 |
1 | ATGCGCGGCG CGTACCCTGT CCTGCCTACT TTGCTCTGCT CTCGACGCTT TGCTCTCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. |