| Gene Symbol | LOC100240692 |
| Entrez Gene ID | 100240692 |
| Full Name | autophagy-related 10 |
| Synonyms | GRMZM2G066059 |
| Gene Type | protein-coding |
| Organism | Zea mays |
IVD Raw Materials
ORF » Species Summary » Zea mays » LOC100240692 cDNA ORF clone
| mRNA | Protein | Name |
|---|---|---|
| NM_001306064.1 | NP_001292993.1 | uncharacterized protein LOC100240692 isoform 3 |
| NM_001306062.1 | NP_001292991.1 | uncharacterized protein LOC100240692 isoform 1 |
| NM_001306065.1 | NP_001292994.1 | uncharacterized protein LOC100240692 isoform 4 precursor |
| NM_001306066.1 | NP_001292995.1 | uncharacterized protein LOC100240692 isoform 5 |
| NM_001306063.1 | NP_001292992.1 | uncharacterized protein LOC100240692 isoform 2 |
The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.
Chung T, Suttangkakul A, Vierstra RD
Plant physiology149(1)220-34(2009 Jan)
Characterization of the maize endosperm transcriptome and its comparison to the rice genome.
Lai J, Dey N, Kim CS, Bharti AK, Rudd S, Mayer KF, Larkins BA, Becraft P, Messing J
Genome research14(10A)1932-7(2004 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100240692 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100240692 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OZa25010 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001306064.1 | |
| Accession Version | NM_001306064.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 423bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1554307200000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100240692 isoform 3 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01001458.1 and BT069513.1. Transcript Variant: This variant (3) uses an alternate splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: FJ445013.1, SRR3147027.9099.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096195, SAMN01096209 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGAAGTTCG ATGGTGCAGG GGATGTAGCT TGGGTCGAGA GCTCCAGCGA CAATGTTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001292993.1 |
| CDS | 587..1009 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001306064.1 |
1 | ATGAAGTTCG ATGGTGCAGG GGATGTAGCT TGGGTCGAGA GCTCCAGCGA CAATGTTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25011 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001306062.1 | |
| Accession Version | NM_001306062.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 648bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1554307200000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100240692 isoform 1 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01001458.1 and BT069513.1. Transcript Variant: This variant (1) encodes the longest isoform (1).z. ##Evidence-Data-START## Transcript exon combination :: BT016613.1, CO442787.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001292991.1 |
| CDS | 349..996 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001306062.1 |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25012 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001306065.1 | |
| Accession Version | NM_001306065.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 375bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1554307200000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100240692 isoform 4 precursor | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01001458.1, BT087740.1 and BT069513.1. Transcript Variant: This variant (4) uses an alternate splice junction at the 3' end of an exon compared to variant 1. The resulting isoform (4) has a shorter and distinct N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: EU964622.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGTTCATGT TTATGATTTC CATGCTGTCT ACAGCTTCTC CTACAAAGTC CCAGTGCTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001292994.1 |
| CDS | 626..1000 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001306065.1 |
1 | ATGTTCATGT TTATGATTTC CATGCTGTCT ACAGCTTCTC CTACAAAGTC CCAGTGCTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25013 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001306063.1 | |
| Accession Version | NM_001306063.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 642bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1554307200000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100240692 isoform 2 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01001458.1 and BT069513.1. Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.z. ##Evidence-Data-START## Transcript exon combination :: BT069513.1, SRR3147052.9214.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209, SAMN03135424 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001292992.1 |
| CDS | 349..990 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001306063.1 |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25014 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001306066.1 | |
| Accession Version | NM_001306066.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 387bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1554307200000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100240692 isoform 5 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01001458.1 and BT087740.1. Transcript Variant: This variant (5) uses an alternate splice junction at the 3' end of an exon and retains a 3' segment compared to variant 1. The resulting isoform (5) has a shorter and distinct C-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BT087740.1, DV504020.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001292995.1 |
| CDS | 349..735 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001306066.1 |
1 | ATGGGAGGCT CCCCTGTATG GGACGGGACT CTGTCTCCGG ACAGCTTCAA CACCTCCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. |
Characterization of the maize endosperm transcriptome and its comparison to the rice genome. |