| Gene Symbol | LOC100194088 |
| Entrez Gene ID | 100194088 |
| Full Name | U3 small nucleolar ribonucleoprotein mpp10 isoform 2 |
| Synonyms | GRMZM2G005308 |
| Gene Type | protein-coding |
| Organism | Zea mays |
IVD Raw Materials
ORF » Species Summary » Zea mays » LOC100194088 cDNA ORF clone
| mRNA | Protein | Name |
|---|---|---|
| XM_008649211.2 | XP_008647433.1 | U3 small nucleolar ribonucleoprotein mpp10 isoform X1 |
| NM_001359391.1 | NP_001346320.1 | uncharacterized protein LOC100194088 |
| XM_008649210.2 | XP_008647432.1 | U3 small nucleolar ribonucleoprotein mpp10 isoform X1 |
| NM_001139142.2 | NP_001132614.1 | U3 small nucleolar ribonucleoprotein mpp10 isoform 2 |
| NM_001359390.1 | NP_001346319.1 | uncharacterized protein LOC100194088 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100194088 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100194088 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OZa09565 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001139142.2 | |
| Accession Version | NM_001139142.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 519bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1487606400000 | |
| Organism | Zea mays | |
| Product | U3 small nucleolar ribonucleoprotein mpp10 isoform 2 | |
| Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT036530.1. On Aug 31, 2014 this sequence version replaced NM_001139142.1. ##Evidence-Data-START## Transcript exon combination :: BT036530.1, FL434311.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00622390, SAMN00622976 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGATAAAGA AAAGAATCGC AGAGAGTCAT TTTGATGATG TTGAGAAGCC GTCTCTCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001132614.1 |
| CDS | 110..628 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001139142.2 |
1 | ATGATAAAGA AAAGAATCGC AGAGAGTCAT TTTGATGATG TTGAGAAGCC GTCTCTCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa24358 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008649211.2 , NM_001359391.1 , XM_008649210.2 , NM_001359390.1 | |
| Accession Version | NM_001359391.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1620bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1559404800000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100194088 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT087284.1 and BT036530.1. On Jan 4, 2018 this sequence version replaced XM_008649211.2. Transcript Variant: This variant (2) has two introns in the 5' UTR. ##Evidence-Data-START## Transcript exon combination :: BT087284.1, GGGU01011762.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001346320.1 |
| CDS | 427..2046 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001359391.1 |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa24358 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008649211.2 , NM_001359391.1 , XM_008649210.2 , NM_001359390.1 | |
| Accession Version | NM_001359390.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1620bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1559404800000 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100194088 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT066805.1 and BT036530.1. On Jan 4, 2018 this sequence version replaced XM_008649210.2. Transcript Variant: This variant (1) has one intron in the 5' UTR. ##Evidence-Data-START## Transcript exon combination :: BT066805.1, GECR01005043.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001346319.1 |
| CDS | 334..1953 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001359390.1 |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa24358 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008649211.2 , NM_001359391.1 , XM_008649210.2 , NM_001359390.1 | |
| Accession Version | XM_008649211.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1620bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1489852800000 | |
| Organism | Zea mays | |
| Product | U3 small nucleolar ribonucleoprotein mpp10 isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008649211.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008647433.1 |
| CDS | 441..2060 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008649211.2 |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa24358 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008649211.2 , NM_001359391.1 , XM_008649210.2 , NM_001359390.1 | |
| Accession Version | XM_008649210.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1620bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1489852800000 | |
| Organism | Zea mays | |
| Product | U3 small nucleolar ribonucleoprotein mpp10 isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008649210.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008647432.1 |
| CDS | 381..2000 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008649210.2 |
1 | ATGGTGGACT TGGACGAGCC GCTCGATGCG GCTGTAACTG CGGAGAAGGG CAAGGCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |