Gene Symbol | Alx1 |
Entrez Gene ID | 373521 |
Full Name | aristaless-like homeobox protein |
Gene Type | protein-coding |
Organism | Strongylocentrotus purpuratus(purple sea urchin) |
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ORF » Species Summary » Strongylocentrotus purpuratus » Alx1 cDNA ORF clone
Gene Symbol | Alx1 |
Entrez Gene ID | 373521 |
Full Name | aristaless-like homeobox protein |
Gene Type | protein-coding |
Organism | Strongylocentrotus purpuratus(purple sea urchin) |
mRNA | Protein | Name |
---|---|---|
XM_011663476.1 | XP_011661778.1 | aristaless-like homeobox protein isoform X1 |
XM_011663478.1 | XP_011661780.1 | aristaless-like homeobox protein isoform X3 |
XM_011663479.1 | XP_011661781.1 | aristaless-like homeobox protein isoform X4 |
XM_011663480.1 | XP_011661782.1 | aristaless-like homeobox protein isoform X5 |
NM_214644.1 | NP_999809.1 | aristaless-like homeobox protein |
XM_030988783.1 | XP_030844643.1 | aristaless-like homeobox protein isoform X2 |
XM_030988784.1 | XP_030844644.1 | aristaless-like homeobox protein isoform X4 |
XM_011663480.2 | XP_011661782.1 | aristaless-like homeobox protein isoform X3 |
XM_011663477.1 | XP_011661779.1 | aristaless-like homeobox protein isoform X2 |
XM_011663478.2 | XP_011661780.1 | aristaless-like homeobox protein isoform X1 |
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis.
Tu Q, Cameron RA, Worley KC, Gibbs RA, Davidson EH
Genome research22(10)2079-87(2012 Oct)
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus.
Damle S, Davidson EH
Developmental biology357(2)505-17(2011 Sep)
Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo.
Ettensohn CA, Illies MR, Oliveri P, De Jong DL
Development (Cambridge, England)130(13)2917-28(2003 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Alx1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Alx1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSd20228 | |
Clone ID Related Accession (Same CDS sequence) | NM_214644.1 | |
Accession Version | NM_214644.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1293bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1569600000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY277399.1. ##Evidence-Data-START## Transcript exon combination :: AY277399.1, JT099088.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03287632 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_999809.1 |
CDS | 253..1545 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd20603 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663478.1 | |
Accession Version | XM_011663478.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1371bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1427040000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011997722.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Strongylocentrotus purpuratus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661780.1 |
CDS | 1238..2608 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd20604 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663479.1 | |
Accession Version | XM_011663479.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1329bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1427040000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011997722.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Strongylocentrotus purpuratus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661781.1 |
CDS | 604..1932 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd20605 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663480.1 | |
Accession Version | XM_011663480.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1299bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1427040000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011997722.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Strongylocentrotus purpuratus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661782.1 |
CDS | 571..1869 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd54950 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663478.2 | |
Accession Version | XM_011663478.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1371bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1569427200000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022145603.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 27, 2019 this sequence version replaced XM_011663478.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Strongylocentrotus purpuratus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661780.1 |
CDS | 974..2344 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd54951 | |
Clone ID Related Accession (Same CDS sequence) | XM_030988783.1 | |
Accession Version | XM_030988783.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1365bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1569427200000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022145603.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Strongylocentrotus purpuratus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030844643.1 |
CDS | 972..2336 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd54952 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663480.2 | |
Accession Version | XM_011663480.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1299bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1569427200000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022145603.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 27, 2019 this sequence version replaced XM_011663480.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Strongylocentrotus purpuratus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661782.1 |
CDS | 555..1853 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTTTT ACCCCTCAAT GCCGTGCTTA GCGACGTATC CCAGCCAGAA CAAAGATATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd54953 | |
Clone ID Related Accession (Same CDS sequence) | XM_030988784.1 | |
Accession Version | XM_030988784.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1158bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1569427200000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022145603.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Strongylocentrotus purpuratus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030844644.1 |
CDS | 980..2137 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTAATT TATTTGGATA TTTTCTCGAC CGGGATCACC ATGATATGGA AAGCAGAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd20601 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663476.1 | |
Accession Version | XM_011663476.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1542bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1427040000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011997722.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Strongylocentrotus purpuratus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661778.1 |
CDS | 559..2100 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSd20602 | |
Clone ID Related Accession (Same CDS sequence) | XM_011663477.1 | |
Accession Version | XM_011663477.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1536bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1427040000000 | |
Organism | Strongylocentrotus purpuratus(purple sea urchin) | |
Product | aristaless-like homeobox protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011997722.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Strongylocentrotus purpuratus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011661779.1 |
CDS | 556..2091 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTACAGGA TGATTTTCAA TAATGCCAAC GGGCAAATGC CCGATGACAT TGTCTCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. |
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus. |
Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. |