ORF » Species Summary » Populus trichocarpa » LOC18108304 cDNA ORF clone

LOC18108304 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC18108304 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC18108304 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa37540 XM_006371197.2
Latest version!		 Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa448919 XM_024591558.1
Latest version!		 Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
View Old Accession Versions >>
OPa37540 XM_006371197.1 Populus trichocarpa hypothetical protein (POPTR_0019s07830g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC18108304 ( XM_006371197.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_006371259.1 Populus trichocarpa hypothetical protein (POPTR_0019s07830g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa37540
    Clone ID Related Accession (Same CDS sequence) XM_006371197.1 , XM_006371197.2
    Accession Version XM_006371197.1 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1692bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008485). 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGA AACTGGCACT 
    GCAACATCTG CAACTCGGAT TTCAGCTGGT GGAGTGGCTG ATGATAGTTT GAGCAGGAAT 
    CAGGTCAGAC TCCAAGCTGC TGCCGCTGCC GCTTCTGTAT ATGAGAAGTC ATTCACATAT 
    CCTTCAGCAA ACACTATAAT GTGGTCACCT GGATATGCCT TACTCCCTCA GGTTCAGAGG 
    CCTTTGGCTG ACTCCACCAA TATGGAGCCA AGTGGAGATC AAGGTGTCGT TGGACAACCA 
    CGGCTGCAAT TTTCTATCCA AGGTGGACCC CCAAACTTGA CCTTGCCTCA ACTTCCCCAC 
    TGTGTCTTTG TCCCCATTCA GGCACCTGGT GCTTGTGTGT ATCAGGGAGA GAGAGCGTGC 
    AGTACACCAA ACTCTGAGTT GGAAGCTCAG AAAAATTTTC TTCAACATCA GATTGAGGTC 
    CTGCAAAGTC AGCTCCAACT ACTACAGAAG CCGGAGACTG AGGAAAGTAT GCTTTTGGCT 
    CCCACAACAT CATCAGATAA TAAAGGCAAG ACTGTTGCAT CATCACCCTC TGTATCAGAA 
    TCTGGTTATC ACGCAGAGAT TGGCCAGACT GATGATGCTG ACACAGCGAA TAACGTAGAT 
    CTCAAGCTTT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006371259.1
    CDS116..1807
    Translation

    Target ORF information:

    RefSeq Version XM_006371197.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0019s07830g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006371197.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGA AACTGGCACT 
    GCAACATCTG CAACTCGGAT TTCAGCTGGT GGAGTGGCTG ATGATAGTTT GAGCAGGAAT 
    CAGGTCAGAC TCCAAGCTGC TGCCGCTGCC GCTTCTGTAT ATGAGAAGTC ATTCACATAT 
    CCTTCAGCAA ACACTATAAT GTGGTCACCT GGATATGCCT TACTCCCTCA GGTTCAGAGG 
    CCTTTGGCTG ACTCCACCAA TATGGAGCCA AGTGGAGATC AAGGTGTCGT TGGACAACCA 
    CGGCTGCAAT TTTCTATCCA AGGTGGACCC CCAAACTTGA CCTTGCCTCA ACTTCCCCAC 
    TGTGTCTTTG TCCCCATTCA GGCACCTGGT GCTTGTGTGT ATCAGGGAGA GAGAGCGTGC 
    AGTACACCAA ACTCTGAGTT GGAAGCTCAG AAAAATTTTC TTCAACATCA GATTGAGGTC 
    CTGCAAAGTC AGCTCCAACT ACTACAGAAG CCGGAGACTG AGGAAAGTAT GCTTTTGGCT 
    CCCACAACAT CATCAGATAA TAAAGGCAAG ACTGTTGCAT CATCACCCTC TGTATCAGAA 
    TCTGGTTATC ACGCAGAGAT TGGCCAGACT GATGATGCTG ACACAGCGAA TAACGTAGAT 
    CTCAAGCTTT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC18108304 ( XM_006371197.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_006371259.1 Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa37540
    Clone ID Related Accession (Same CDS sequence) XM_006371197.1 , XM_006371197.2
    Accession Version XM_006371197.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1692bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006371197.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGA AACTGGCACT 
    GCAACATCTG CAACTCGGAT TTCAGCTGGT GGAGTGGCTG ATGATAGTTT GAGCAGGAAT 
    CAGGTCAGAC TCCAAGCTGC TGCCGCTGCC GCTTCTGTAT ATGAGAAGTC ATTCACATAT 
    CCTTCAGCAA ACACTATAAT GTGGTCACCT GGATATGCCT TACTCCCTCA GGTTCAGAGG 
    CCTTTGGCTG ACTCCACCAA TATGGAGCCA AGTGGAGATC AAGGTGTCGT TGGACAACCA 
    CGGCTGCAAT TTTCTATCCA AGGTGGACCC CCAAACTTGA CCTTGCCTCA ACTTCCCCAC 
    TGTGTCTTTG TCCCCATTCA GGCACCTGGT GCTTGTGTGT ATCAGGGAGA GAGAGCGTGC 
    AGTACACCAA ACTCTGAGTT GGAAGCTCAG AAAAATTTTC TTCAACATCA GATTGAGGTC 
    CTGCAAAGTC AGCTCCAACT ACTACAGAAG CCGGAGACTG AGGAAAGTAT GCTTTTGGCT 
    CCCACAACAT CATCAGATAA TAAAGGCAAG ACTGTTGCAT CATCACCCTC TGTATCAGAA 
    TCTGGTTATC ACGCAGAGAT TGGCCAGACT GATGATGCTG ACACAGCGAA TAACGTAGAT 
    CTCAAGCTTT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006371259.1
    CDS235..1926
    Translation

    Target ORF information:

    RefSeq Version XM_006371197.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006371197.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGA AACTGGCACT 
    GCAACATCTG CAACTCGGAT TTCAGCTGGT GGAGTGGCTG ATGATAGTTT GAGCAGGAAT 
    CAGGTCAGAC TCCAAGCTGC TGCCGCTGCC GCTTCTGTAT ATGAGAAGTC ATTCACATAT 
    CCTTCAGCAA ACACTATAAT GTGGTCACCT GGATATGCCT TACTCCCTCA GGTTCAGAGG 
    CCTTTGGCTG ACTCCACCAA TATGGAGCCA AGTGGAGATC AAGGTGTCGT TGGACAACCA 
    CGGCTGCAAT TTTCTATCCA AGGTGGACCC CCAAACTTGA CCTTGCCTCA ACTTCCCCAC 
    TGTGTCTTTG TCCCCATTCA GGCACCTGGT GCTTGTGTGT ATCAGGGAGA GAGAGCGTGC 
    AGTACACCAA ACTCTGAGTT GGAAGCTCAG AAAAATTTTC TTCAACATCA GATTGAGGTC 
    CTGCAAAGTC AGCTCCAACT ACTACAGAAG CCGGAGACTG AGGAAAGTAT GCTTTTGGCT 
    CCCACAACAT CATCAGATAA TAAAGGCAAG ACTGTTGCAT CATCACCCTC TGTATCAGAA 
    TCTGGTTATC ACGCAGAGAT TGGCCAGACT GATGATGCTG ACACAGCGAA TAACGTAGAT 
    CTCAAGCTTT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC18108304 ( XM_024591558.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024447326.1 Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa448919
    Clone ID Related Accession (Same CDS sequence) XM_024591558.1
    Accession Version XM_024591558.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1701bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGG TAATTATGAA 
    ACTGGCACTG CAACATCTGC AACTCGGATT TCAGCTGGTG GAGTGGCTGA TGATAGTTTG 
    AGCAGGAATC AGGTCAGACT CCAAGCTGCT GCCGCTGCCG CTTCTGTATA TGAGAAGTCA 
    TTCACATATC CTTCAGCAAA CACTATAATG TGGTCACCTG GATATGCCTT ACTCCCTCAG 
    GTTCAGAGGC CTTTGGCTGA CTCCACCAAT ATGGAGCCAA GTGGAGATCA AGGTGTCGTT 
    GGACAACCAC GGCTGCAATT TTCTATCCAA GGTGGACCCC CAAACTTGAC CTTGCCTCAA 
    CTTCCCCACT GTGTCTTTGT CCCCATTCAG GCACCTGGTG CTTGTGTGTA TCAGGGAGAG 
    AGAGCGTGCA GTACACCAAA CTCTGAGTTG GAAGCTCAGA AAAATTTTCT TCAACATCAG 
    ATTGAGGTCC TGCAAAGTCA GCTCCAACTA CTACAGAAGC CGGAGACTGA GGAAAGTATG 
    CTTTTGGCTC CCACAACATC ATCAGATAAT AAAGGCAAGA CTGTTGCATC ATCACCCTCT 
    GTATCAGAAT CTGGTTATCA CGCAGAGATT GGCCAGACTG ATGATGCTGA CACAGCGAAT 
    AACGTAGATC TCAAGCTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024447326.1
    CDS238..1938
    Translation

    Target ORF information:

    RefSeq Version XM_024591558.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa ERAD-associated E3 ubiquitin-protein ligase HRD1B (LOC18108304), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024591558.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGATGCGGC TGCGCACATA CGCGAGCCTC AGTTTGGTGG GTGCTCTAGC TGTAACTTAT 
    CATGCATTCA ACAGTAGAGG CCAGTTTTAC CCTGCTATGG TTTATTTATC CACCTCTAAG 
    ATCACTTTAG TCCTTCTTCT CAACATGGGT TTAGTCATTA TGTGCATTTT ATGGCAATTC 
    ATTAAGCGGC TATTCCTTGG TTCCCTCCGT GAAGCTGAAG TTGAGAGGTT GAATGAGCAG 
    TCGTGGAGAG AGCTCATGGA AATTCTCTTT GCCATTACTA TTTTTAGGCA GGACTTCTCC 
    GTAACCTTTC TTGCCATGGT CACCACCTTG TTATTAATCA AGTCTCTGCA TTGGTTGGCT 
    CAAAAGAGGG TTGAATACAT TGAGACAACA CCATCTGTTA ACTGGTTATC TCATGTTCGG 
    ATTGTTTCTT TTCTGGGTTT CCTTTTTCTC CTAGACAGCA TGTTTTTGTA CAGTTCTGTA 
    AAGTATTTGC TTGAAACAAG GCAGGCTTCA GTGTCTCTCT TCTTCTCGTT TGAGTACATG 
    ATACTGGCGA CAACAACTGT GTCAACATTT GTAAAATATG TTTTCTATGT GAGTGACATG 
    CTTATGGAAG GACAATGGGA AAAAAAGCCT ATTTACACCT TTTATTTGGA ATTTGTTCGG 
    GACTTGCTTC ACTTGTCTAT GTATCTGTGC TTCTTCCTTG TCATTTTCAT GAACTATGGT 
    GTGCCTTTGC ACTTAATACG GGAGCTTTAT GAGACACTCA GGAATTTCAA AATTCGTGTT 
    GCTGATTACA TTCGTTATAG GAAGATCACT TCCAATATGA ATGATCGGTT TCCAGATGCA 
    ACAGCTGAAG AGATTGATGC AAGTGATGCA ACCTGTATTA TTTGTCGTGA AGAGATGACC 
    ACAGCCAAGA AGTTATTATG TGGACATCTT TTTCATGTTC ATTGTCTGCG TTCATGGTTG 
    GAGCGACAAC ATACTTGCCC TACATGCAGA GCCCTAGTTG TACCACCTGA AAATAGTGTC 
    AGTGCATCTG GAGCACAACA TGGAGCACAA CCAGATACTC ACCAACAGGG TAATTATGAA 
    ACTGGCACTG CAACATCTGC AACTCGGATT TCAGCTGGTG GAGTGGCTGA TGATAGTTTG 
    AGCAGGAATC AGGTCAGACT CCAAGCTGCT GCCGCTGCCG CTTCTGTATA TGAGAAGTCA 
    TTCACATATC CTTCAGCAAA CACTATAATG TGGTCACCTG GATATGCCTT ACTCCCTCAG 
    GTTCAGAGGC CTTTGGCTGA CTCCACCAAT ATGGAGCCAA GTGGAGATCA AGGTGTCGTT 
    GGACAACCAC GGCTGCAATT TTCTATCCAA GGTGGACCCC CAAACTTGAC CTTGCCTCAA 
    CTTCCCCACT GTGTCTTTGT CCCCATTCAG GCACCTGGTG CTTGTGTGTA TCAGGGAGAG 
    AGAGCGTGCA GTACACCAAA CTCTGAGTTG GAAGCTCAGA AAAATTTTCT TCAACATCAG 
    ATTGAGGTCC TGCAAAGTCA GCTCCAACTA CTACAGAAGC CGGAGACTGA GGAAAGTATG 
    CTTTTGGCTC CCACAACATC ATCAGATAAT AAAGGCAAGA CTGTTGCATC ATCACCCTCT 
    GTATCAGAAT CTGGTTATCA CGCAGAGATT GGCCAGACTG ATGATGCTGA CACAGCGAAT 
    AACGTAGATC TCAAGCTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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