sox1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	sox1a
Entrez Gene ID	436756
Full Name	SRY (sex determining region Y)-box 1a
Synonyms	wu:fi38c08,wu:fj38h03,zgc:92865
General protein information	Preferred Names SRY (sex determining region Y)-box 1a Names transcription factor Sox-1a SRY-box containing gene 1a fi38c08 fj38h03 transcription factor SOX1A
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001002483.1	NP_001002483.1	transcription factor Sox-1a
NM_001002483.2	NP_001002483.1	transcription factor Sox-1a

Pathways from BioSystems

Homologies

Xenopus tropicalis (tropical clawed frog)	sox1	NP_001074465.1
Homo sapiens (human)	SOX1	NP_005977.2
Mus musculus (house mouse)	Sox1	NP_033259.2
Danio rerio (zebrafish)	sox1a	NP_001002483.1
Rattus norvegicus (Norway rat)	LOC100912302	XP_003752300.1
Danio rerio (zebrafish)	sox1b	NP_001032751.1

Gene Ontology
Bibliography

Related articles in PubMed

The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos.
Gerber V, Yang L, Takamiya M, Ribes V, Gourain V, Peravali R, Stegmaier J, Mikut R, Reischl M, Ferg M, Rastegar S, Strähle U
Development (Cambridge, England)146(4)(2019 02)

Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells.
Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW
Proceedings of the National Academy of Sciences of the United States of America115(42)E9812-E9821(2018 10)

Bsx controls pineal complex development.
Schredelseker T, Driever W
Development (Cambridge, England)145(13)(2018 07)

Neurogenetic asymmetries in the catshark developing habenulae: mechanistic and evolutionary implications.
Lagadec R, Lanoizelet M, Sánchez-Farías N, Hérard F, Menuet A, Mayeur H, Billoud B, Rodriguez-Moldes I, Candal E, Mazan S
Scientific reports8(1)4616(2018 03)

Tal1, Gata2a, and Gata3 Have Distinct Functions in the Development of V2b and Cerebrospinal Fluid-Contacting KA Spinal Neurons.
Andrzejczuk LA, Banerjee S, England SJ, Voufo C, Kamara K, Lewis KE
Frontiers in neuroscience12170(2018)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following sox1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sox1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa02171	NM_001002483.2 Latest version!	Danio rerio SRY-box transcription factor 1a (sox1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
View Old Accession Versions >>
ODa02171	NM_001002483.1	Danio rerio SRY (sex determining region Y)-box 1a (sox1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

sox1a ( NM_001002483.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002483.1 Danio rerio SRY (sex determining region Y)-box 1a (sox1a), mRNA.

Price & Availability↑

CloneID	ODa02171
Clone ID Related Accession (Same CDS sequence)	NM_001002483.1 , NM_001002483.2
Accession Version	NM_001002483.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1011bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1549036800000
Organism	Danio rerio(zebrafish)
Product	transcription factor Sox-1a
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076326.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC076326.1 [ECO:0000332] ##Evidence-Data-END##

ATGTATAGCA TGATGATGGA AACGGACCTT CATTCCCCGG GACCCCAAAC CAACACGAAC 
CCGGGGCAAA CGGGTCCAAA TTCGGGGAGC AAAGCCAATC AAGACCGCGT AAAGAGACCC 
ATGAACGCGT TTATGGTCTG GTCTCGGGGC CAGCGCCGAA AAATGGCACA GGAGAACCCC 
AAAATGCACA ACTCTGAAAT TAGCAAAAGA CTCGGTGCTG AGTGGAAGGT GATGTCAGAG 
GCTGAAAAGC GGCCCTTTAT TGATGAGGCG AAGCGGTTGC GAGCCATGCA CATGAAAGAG 
CATCCGGATT ACAAATACAG ACCGAGGCGC AAAACCAAGA CCCTGCTTAA AAAGGACAAG 
TACTCGTTGG CGGGTGGCTT GCTCGGCGGT GCGGGTGGTG GAGTCGGGAT GAGTCCTGCG 
GGGGTCGGCC AGAGGTTGGA GAGTCCTGGG GGTCACGGAA GCTCGGCCAG CGCTGGCTAC 
GCGCACATGA ACGGCTGGGC GAACGGCACT TACTCCGGCC AGGTGGCTGC CGCGGCGGCG 
GCCGCCGCGA TGATGCAGGA GGCGCAGCTC GCTTACAGCC AGCACCCCGG CAGTGGCTCT 
CACCATCACC ACGCTCATCA CCATCACCCG CACAATCCTC AGCCCATGCA CCGCTACGAC 
ATGACTGCAC TCCAGTACAG CCCCATCTCG AACTCCCAGA GCTACATGAG CGCGTCCCCG 
TCCGGCTACG GTGGGATATC ATACACGCAG CATCAGAACT CCAGCGTCGC GACTCCTGCC 
GCCATCGGCA CGCTGAGCTC GCTCGTCAAG TCCGAACCCA ATATAAGTCC CCCGGTTACC 
ACGCACTCCC GAGGCCCTTG CCCCGGAGAC TTGAGAGAGA TGATTAGCAT GTATTTACCG 
ACCGGGGAGT CCGGGGATCC GTCTGTGCAG AGCAGACTGC ATGCCTTACC GCAGCACTAT 
CAGAGCACGA CTGCCGGAGT AAACGGAACT GTCCCACTGA CGCATATTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002483.1
CDS	321..1331
Translation	MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGSSASAGYAHMNGWANGTYSGQVAAAAAAAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASPSGYGGISYTQHQNSSVATPAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLPTGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI

Target ORF information:

RefSeq Version	NM_001002483.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SRY (sex determining region Y)-box 1a (sox1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002483.1

ORF Insert Sequence:

ATGTATAGCA TGATGATGGA AACGGACCTT CATTCCCCGG GACCCCAAAC CAACACGAAC 
CCGGGGCAAA CGGGTCCAAA TTCGGGGAGC AAAGCCAATC AAGACCGCGT AAAGAGACCC 
ATGAACGCGT TTATGGTCTG GTCTCGGGGC CAGCGCCGAA AAATGGCACA GGAGAACCCC 
AAAATGCACA ACTCTGAAAT TAGCAAAAGA CTCGGTGCTG AGTGGAAGGT GATGTCAGAG 
GCTGAAAAGC GGCCCTTTAT TGATGAGGCG AAGCGGTTGC GAGCCATGCA CATGAAAGAG 
CATCCGGATT ACAAATACAG ACCGAGGCGC AAAACCAAGA CCCTGCTTAA AAAGGACAAG 
TACTCGTTGG CGGGTGGCTT GCTCGGCGGT GCGGGTGGTG GAGTCGGGAT GAGTCCTGCG 
GGGGTCGGCC AGAGGTTGGA GAGTCCTGGG GGTCACGGAA GCTCGGCCAG CGCTGGCTAC 
GCGCACATGA ACGGCTGGGC GAACGGCACT TACTCCGGCC AGGTGGCTGC CGCGGCGGCG 
GCCGCCGCGA TGATGCAGGA GGCGCAGCTC GCTTACAGCC AGCACCCCGG CAGTGGCTCT 
CACCATCACC ACGCTCATCA CCATCACCCG CACAATCCTC AGCCCATGCA CCGCTACGAC 
ATGACTGCAC TCCAGTACAG CCCCATCTCG AACTCCCAGA GCTACATGAG CGCGTCCCCG 
TCCGGCTACG GTGGGATATC ATACACGCAG CATCAGAACT CCAGCGTCGC GACTCCTGCC 
GCCATCGGCA CGCTGAGCTC GCTCGTCAAG TCCGAACCCA ATATAAGTCC CCCGGTTACC 
ACGCACTCCC GAGGCCCTTG CCCCGGAGAC TTGAGAGAGA TGATTAGCAT GTATTTACCG 
ACCGGGGAGT CCGGGGATCC GTCTGTGCAG AGCAGACTGC ATGCCTTACC GCAGCACTAT 
CAGAGCACGA CTGCCGGAGT AAACGGAACT GTCCCACTGA CGCATATTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

sox1a ( NM_001002483.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002483.1 Danio rerio SRY-box transcription factor 1a (sox1a), mRNA.

Price & Availability↑

CloneID	ODa02171
Clone ID Related Accession (Same CDS sequence)	NM_001002483.1 , NM_001002483.2
Accession Version	NM_001002483.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1011bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1578067200000
Organism	Danio rerio(zebrafish)
Product	transcription factor Sox-1a
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076326.1. On Jul 1, 2019 this sequence version replaced NM_001002483.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript is intronless :: BC076326.1, GFIL01039323.1 [ECO:0000345] ##Evidence-Data-END##

ATGTATAGCA TGATGATGGA AACGGACCTT CATTCCCCGG GACCCCAAAC CAACACGAAC 
CCGGGGCAAA CGGGTCCAAA TTCGGGGAGC AAAGCCAATC AAGACCGCGT AAAGAGACCC 
ATGAACGCGT TTATGGTCTG GTCTCGGGGC CAGCGCCGAA AAATGGCACA GGAGAACCCC 
AAAATGCACA ACTCTGAAAT TAGCAAAAGA CTCGGTGCTG AGTGGAAGGT GATGTCAGAG 
GCTGAAAAGC GGCCCTTTAT TGATGAGGCG AAGCGGTTGC GAGCCATGCA CATGAAAGAG 
CATCCGGATT ACAAATACAG ACCGAGGCGC AAAACCAAGA CCCTGCTTAA AAAGGACAAG 
TACTCGTTGG CGGGTGGCTT GCTCGGCGGT GCGGGTGGTG GAGTCGGGAT GAGTCCTGCG 
GGGGTCGGCC AGAGGTTGGA GAGTCCTGGG GGTCACGGAA GCTCGGCCAG CGCTGGCTAC 
GCGCACATGA ACGGCTGGGC GAACGGCACT TACTCCGGCC AGGTGGCTGC CGCGGCGGCG 
GCCGCCGCGA TGATGCAGGA GGCGCAGCTC GCTTACAGCC AGCACCCCGG CAGTGGCTCT 
CACCATCACC ACGCTCATCA CCATCACCCG CACAATCCTC AGCCCATGCA CCGCTACGAC 
ATGACTGCAC TCCAGTACAG CCCCATCTCG AACTCCCAGA GCTACATGAG CGCGTCCCCG 
TCCGGCTACG GTGGGATATC ATACACGCAG CATCAGAACT CCAGCGTCGC GACTCCTGCC 
GCCATCGGCA CGCTGAGCTC GCTCGTCAAG TCCGAACCCA ATATAAGTCC CCCGGTTACC 
ACGCACTCCC GAGGCCCTTG CCCCGGAGAC TTGAGAGAGA TGATTAGCAT GTATTTACCG 
ACCGGGGAGT CCGGGGATCC GTCTGTGCAG AGCAGACTGC ATGCCTTACC GCAGCACTAT 
CAGAGCACGA CTGCCGGAGT AAACGGAACT GTCCCACTGA CGCATATTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002483.1
CDS	320..1330
Translation	MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGSSASAGYAHMNGWANGTYSGQVAAAAAAAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASPSGYGGISYTQHQNSSVATPAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLPTGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI

Target ORF information:

RefSeq Version	NM_001002483.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SRY-box transcription factor 1a (sox1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002483.2

ORF Insert Sequence:

ATGTATAGCA TGATGATGGA AACGGACCTT CATTCCCCGG GACCCCAAAC CAACACGAAC 
CCGGGGCAAA CGGGTCCAAA TTCGGGGAGC AAAGCCAATC AAGACCGCGT AAAGAGACCC 
ATGAACGCGT TTATGGTCTG GTCTCGGGGC CAGCGCCGAA AAATGGCACA GGAGAACCCC 
AAAATGCACA ACTCTGAAAT TAGCAAAAGA CTCGGTGCTG AGTGGAAGGT GATGTCAGAG 
GCTGAAAAGC GGCCCTTTAT TGATGAGGCG AAGCGGTTGC GAGCCATGCA CATGAAAGAG 
CATCCGGATT ACAAATACAG ACCGAGGCGC AAAACCAAGA CCCTGCTTAA AAAGGACAAG 
TACTCGTTGG CGGGTGGCTT GCTCGGCGGT GCGGGTGGTG GAGTCGGGAT GAGTCCTGCG 
GGGGTCGGCC AGAGGTTGGA GAGTCCTGGG GGTCACGGAA GCTCGGCCAG CGCTGGCTAC 
GCGCACATGA ACGGCTGGGC GAACGGCACT TACTCCGGCC AGGTGGCTGC CGCGGCGGCG 
GCCGCCGCGA TGATGCAGGA GGCGCAGCTC GCTTACAGCC AGCACCCCGG CAGTGGCTCT 
CACCATCACC ACGCTCATCA CCATCACCCG CACAATCCTC AGCCCATGCA CCGCTACGAC 
ATGACTGCAC TCCAGTACAG CCCCATCTCG AACTCCCAGA GCTACATGAG CGCGTCCCCG 
TCCGGCTACG GTGGGATATC ATACACGCAG CATCAGAACT CCAGCGTCGC GACTCCTGCC 
GCCATCGGCA CGCTGAGCTC GCTCGTCAAG TCCGAACCCA ATATAAGTCC CCCGGTTACC 
ACGCACTCCC GAGGCCCTTG CCCCGGAGAC TTGAGAGAGA TGATTAGCAT GTATTTACCG 
ACCGGGGAGT CCGGGGATCC GTCTGTGCAG AGCAGACTGC ATGCCTTACC GCAGCACTAT 
CAGAGCACGA CTGCCGGAGT AAACGGAACT GTCCCACTGA CGCATATTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos.
Development (Cambridge, England)146(4)(2019 02)
Gerber V,Yang L,Takamiya M,Ribes V,Gourain V,Peravali R,Stegmaier J,Mikut R,Reischl M,Ferg M,Rastegar S,Strähle U

Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells.
Proceedings of the National Academy of Sciences of the United States of America115(42)E9812-E9821(2018 10)
Roussigné M,Wei L,Tsingos E,Kuchling F,Alkobtawi M,Tsalavouta M,Wittbrodt J,Carl M,Blader P,Wilson SW

Bsx controls pineal complex development.
Development (Cambridge, England)145(13)(2018 07)
Schredelseker T,Driever W

Neurogenetic asymmetries in the catshark developing habenulae: mechanistic and evolutionary implications.
Scientific reports8(1)4616(2018 03)
Lagadec R,Lanoizelet M,Sánchez-Farías N,Hérard F,Menuet A,Mayeur H,Billoud B,Rodriguez-Moldes I,Candal E,Mazan S

Tal1, Gata2a, and Gata3 Have Distinct Functions in the Development of V2b and Cerebrospinal Fluid-Contacting KA Spinal Neurons.
Frontiers in neuroscience12170(2018)
Andrzejczuk LA,Banerjee S,England SJ,Voufo C,Kamara K,Lewis KE

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sox1a cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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