opn1lw1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	opn1lw1
Entrez Gene ID	30413
Full Name	opsin 1 (cone pigments), long-wave-sensitive, 1
Synonyms	LWS-1,lws1,rdops,zfred
General protein information	Preferred Names opsin 1 (cone pigments), long-wave-sensitive, 1 Names red-sensitive opsin-1 LC opsin long-wavelength-sensitive-1 cone opsin red cone photoreceptor pigment 1 red-sensitive opsin
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001313715.1	NP_001300644.1	red-sensitive opsin-1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	OPN1LW	NP_776991.1
Gallus gallus (chicken)	OPN1LW	NP_990771.1
Danio rerio (zebrafish)	opn1lw1	NP_571250.1
Pan troglodytes (chimpanzee)	OPN1LW	XP_003317827.1
Rattus norvegicus (Norway rat)	Opn1mw	NP_446000.1
Mus musculus (house mouse)	Opn1mw	NP_032132.1
Danio rerio (zebrafish)	opn1lw2	NP_001002443.1
Homo sapiens (human)	OPN1LW	NP_064445.2
Canis lupus familiaris (dog)	OPN1LW	NP_001184001.1
Xenopus tropicalis (tropical clawed frog)	opn1lw	NP_001096331.1

Gene Ontology
Bibliography

Related articles in PubMed

Acute exposure to triphenyl phosphate (TPhP) disturbs ocular development and muscular organization in zebrafish larvae.
Shi Q, Tsui MMP, Hu C, Lam JCW, Zhou B, Chen L
Ecotoxicology and environmental safety179119-126(2019 Sep)

Optical toxicity of triphenyl phosphate in zebrafish larvae.
Shi Q, Wang Z, Chen L, Fu J, Han J, Hu B, Zhou B
Aquatic toxicology (Amsterdam, Netherlands)210139-147(2019 May)

A Notch-mediated, temporal asymmetry in BMP pathway activation promotes photoreceptor subtype diversification.
Cau E, Ronsin B, Bessière L, Blader P
PLoS biology17(1)e2006250(2019 01)

Isolation of photoreceptors from mature, developing, and regenerated zebrafish retinas, and of microglia/macrophages from regenerating zebrafish retinas.
Sun C, Mitchell DM, Stenkamp DL
Experimental eye research177130-144(2018 12)

Characterisation of maturation of photoreceptor cell subtypes during zebrafish retinal development.
Crespo C, Knust E
Biology open7(11)(2018 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following opn1lw1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the opn1lw1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa17066	NM_001313715.1 Latest version!	Danio rerio opsin 1 (cone pigments), long-wave-sensitive, 1 (opn1lw1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
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5 or more Clone	50% OFF
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

opn1lw1 ( NM_001313715.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001300644.1 Danio rerio opsin 1 (cone pigments), long-wave-sensitive, 1 (opn1lw1), mRNA.

Price & Availability↑

CloneID	ODa17066
Clone ID Related Accession (Same CDS sequence)	NM_001313715.1
Accession Version	NM_001313715.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1074bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1578067200000
Organism	Danio rerio(zebrafish)
Product	red-sensitive opsin-1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH444201.1, EH435011.1, EH458584.1 and EH458058.1. On Aug 27, 2015 this sequence version replaced XM_005169251.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC059415.1, KT008400.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA708836, SAMN01765705 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGCAGAGC ATTGGGGAGA TGCAATTTAT GCAGCCCGGC GAAAGGGAGA TGAAACCACA 
AGGGAAGCAA TGTTCACATA TACCAACAGT AATAACACCA AGGATCCCTT TGAGGGTCCC 
AATTACCACA TTGCCCCTCG ATGGGTGTAC AATGTTGCAA CAGTCTGGAT GTTCTTTGTG 
GTTGTCGCCT CAACCTTCAC CAATGGCCTG GTACTGGTGG CCACGGCCAA ATTCAAGAAG 
CTCCGTCACC CTCTCAACTG GATCCTGGTC AACCTTGCTA TAGCTGATCT GGGAGAGACT 
CTGTTTGCCA GCACAATCAG TGTCATTAAC CAATTTTTCG GCTACTTTAT CCTAGGACAT 
CCCATGTGTA TTTTTGAAGG CTACACTGTG TCAGTATGTG GTATTGCTGC ACTGTGGTCG 
TTGACTGTCA TCTCTTGGGA AAGATGGGTG GTTGTCTGTA AACCATTTGG AAATGTCAAG 
TTTGATGCTA AATGGGCATC TGCTGGCATT ATCTTCTCCT GGGTTTGGGC TGCTGCTTGG 
TGTGCACCTC CCATCTTTGG CTGGAGCAGA TACTGGCCTC ATGGTCTGAA GACCTCCTGT 
GGCCCTGATG TCTTCAGTGG AAGCGAGGAC CCTGGAGTTC AGTCCTACAT GGTGGTGCTC 
ATGATCACCT GCTGTATCAT CCCTCTAGCT ATTATCATTC TCTGCTACAT TGCTGTGTAC 
CTGGCCATCC ATGCTGTCGC CCAGCAGCAG AAGGATTCTG AGTCCACACA GAAGGCCGAG 
AAGGAAGTGT CCAGAATGGT GGTTGTCATG ATCTTCGCCT ACTGTTTCTG CTGGGGTCCT 
TACACGTTCT TCGCCTGCTT TGCAGCTGCA AACCCAGGCT ATGCCTTCCA CCCACTGGCA 
GCAGCCATGC CTGCCTACTT TGCCAAGAGC GCCACCATCT ACAACCCCGT CATTTATGTC 
TTCATGAACC GACAGTTCCG CGTATGCATC ATGCAGCTCT TTGGAAAGAA GGTGGATGAT 
GGCTCTGAGG TGTCCACATC CAAAACAGAA GTGTCTTCTG TGGCTCCTGC ATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001300644.1
CDS	109..1182
Translation	MAEHWGDAIYAARRKGDETTREAMFTYTNSNNTKDPFEGPNYHIAPRWVYNVATVWMFFVVVASTFTNGLVLVATAKFKKLRHPLNWILVNLAIADLGETLFASTISVINQFFGYFILGHPMCIFEGYTVSVCGIAALWSLTVISWERWVVVCKPFGNVKFDAKWASAGIIFSWVWAAAWCAPPIFGWSRYWPHGLKTSCGPDVFSGSEDPGVQSYMVVLMITCCIIPLAIIILCYIAVYLAIHAVAQQQKDSESTQKAEKEVSRMVVVMIFAYCFCWGPYTFFACFAAANPGYAFHPLAAAMPAYFAKSATIYNPVIYVFMNRQFRVCIMQLFGKKVDDGSEVSTSKTEVSSVAPA

Target ORF information:

RefSeq Version	NM_001313715.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio opsin 1 (cone pigments), long-wave-sensitive, 1 (opn1lw1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001313715.1

ORF Insert Sequence:

ATGGCAGAGC ATTGGGGAGA TGCAATTTAT GCAGCCCGGC GAAAGGGAGA TGAAACCACA 
AGGGAAGCAA TGTTCACATA TACCAACAGT AATAACACCA AGGATCCCTT TGAGGGTCCC 
AATTACCACA TTGCCCCTCG ATGGGTGTAC AATGTTGCAA CAGTCTGGAT GTTCTTTGTG 
GTTGTCGCCT CAACCTTCAC CAATGGCCTG GTACTGGTGG CCACGGCCAA ATTCAAGAAG 
CTCCGTCACC CTCTCAACTG GATCCTGGTC AACCTTGCTA TAGCTGATCT GGGAGAGACT 
CTGTTTGCCA GCACAATCAG TGTCATTAAC CAATTTTTCG GCTACTTTAT CCTAGGACAT 
CCCATGTGTA TTTTTGAAGG CTACACTGTG TCAGTATGTG GTATTGCTGC ACTGTGGTCG 
TTGACTGTCA TCTCTTGGGA AAGATGGGTG GTTGTCTGTA AACCATTTGG AAATGTCAAG 
TTTGATGCTA AATGGGCATC TGCTGGCATT ATCTTCTCCT GGGTTTGGGC TGCTGCTTGG 
TGTGCACCTC CCATCTTTGG CTGGAGCAGA TACTGGCCTC ATGGTCTGAA GACCTCCTGT 
GGCCCTGATG TCTTCAGTGG AAGCGAGGAC CCTGGAGTTC AGTCCTACAT GGTGGTGCTC 
ATGATCACCT GCTGTATCAT CCCTCTAGCT ATTATCATTC TCTGCTACAT TGCTGTGTAC 
CTGGCCATCC ATGCTGTCGC CCAGCAGCAG AAGGATTCTG AGTCCACACA GAAGGCCGAG 
AAGGAAGTGT CCAGAATGGT GGTTGTCATG ATCTTCGCCT ACTGTTTCTG CTGGGGTCCT 
TACACGTTCT TCGCCTGCTT TGCAGCTGCA AACCCAGGCT ATGCCTTCCA CCCACTGGCA 
GCAGCCATGC CTGCCTACTT TGCCAAGAGC GCCACCATCT ACAACCCCGT CATTTATGTC 
TTCATGAACC GACAGTTCCG CGTATGCATC ATGCAGCTCT TTGGAAAGAA GGTGGATGAT 
GGCTCTGAGG TGTCCACATC CAAAACAGAA GTGTCTTCTG TGGCTCCTGC ATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Acute exposure to triphenyl phosphate (TPhP) disturbs ocular development and muscular organization in zebrafish larvae.
Ecotoxicology and environmental safety179119-126(2019 Sep)
Shi Q,Tsui MMP,Hu C,Lam JCW,Zhou B,Chen L

Optical toxicity of triphenyl phosphate in zebrafish larvae.
Aquatic toxicology (Amsterdam, Netherlands)210139-147(2019 May)
Shi Q,Wang Z,Chen L,Fu J,Han J,Hu B,Zhou B

A Notch-mediated, temporal asymmetry in BMP pathway activation promotes photoreceptor subtype diversification.
PLoS biology17(1)e2006250(2019 01)
Cau E,Ronsin B,Bessière L,Blader P

Isolation of photoreceptors from mature, developing, and regenerated zebrafish retinas, and of microglia/macrophages from regenerating zebrafish retinas.
Experimental eye research177130-144(2018 12)
Sun C,Mitchell DM,Stenkamp DL

Characterisation of maturation of photoreceptor cell subtypes during zebrafish retinal development.
Biology open7(11)(2018 Oct)
Crespo C,Knust E