tapbp.1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	tapbp.1
Entrez Gene ID	30163
Full Name	TAP binding protein (tapasin), tandem duplicate 1
Synonyms	SI:dZ179B20.1,SI:dZ179B20.3,SI:dZ179B20.7,mhc1uda,mhc1ufa,tapbp,tpsn,zgc:109814
General protein information	Preferred Names TAP binding protein (tapasin), tandem duplicate 1 Names TAP binding protein (tapasin), tandem duplicate 1 TAP binding protein, tandem duplicate 1 tapasin
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_130974.1	NP_571049.1	TAP binding protein (tapasin), tandem duplicate 1 precursor
XM_005159471.3	XP_005159528.1	TAP binding protein (tapasin), tandem duplicate 1
NM_130974.3	NP_571049.2	TAP binding protein (tapasin), tandem duplicate 1 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	TAPBP	NP_003181.3
Macaca mulatta (Rhesus monkey)	TAPBP	XP_001116214.1
Mus musculus (house mouse)	Tapbp	NP_001020484.1
Danio rerio (zebrafish)	si:ch211-51f10.1	NP_001124083.1
Rattus norvegicus (Norway rat)	Tapbp	NP_149089.1
Pan troglodytes (chimpanzee)	TAPBP	XP_001170532.1
Canis lupus familiaris (dog)	TAPBP	NP_001041566.1
Bos taurus (cattle)	TAPBP	NP_001039350.1
Danio rerio (zebrafish)	tapbp	XP_005159528.1
Gallus gallus (chicken)	TAPBP	NP_001029988.2
Xenopus tropicalis (tropical clawed frog)	tapbp	XP_002938728.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Characterization of immune-matched hematopoietic transplantation in zebrafish.
de Jong JL, Burns CE, Chen AT, Pugach E, Mayhall EA, Smith AC, Feldman HA, Zhou Y, Zon LI
Blood117(16)4234-42(2011 Apr)

Characterization of the six zebrafish clade B fibrillar procollagen genes, with evidence for evolutionarily conserved alternative splicing within the pro-alpha1(V) C-propeptide.
Hoffman GG, Branam AM, Huang G, Pelegri F, Cole WG, Wenstrup RM, Greenspan DS
Matrix biology : journal of the International Society for Matrix Biology29(4)261-75(2010 May)

A gain-of-function screen in zebrafish identifies a guanylate cyclase with a role in neuronal degeneration.
Maddison LA, Lu J, Victoroff T, Scott E, Baier H, Chen W
Molecular genetics and genomics : MGG281(5)551-63(2009 May)

Positive correlation between gene coexpression and positional clustering in the zebrafish genome.
Ng YK, Wu W, Zhang L
BMC genomics1042(2009 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following tapbp.1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the tapbp.1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa23917	NM_130974.3 Latest version!	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ODa31840	NM_130974.1 Latest version!	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ODa23917	XM_005159471.3 Latest version!	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

tapbp.1 ( NM_130974.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571049.2 Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Price & Availability↑

CloneID	ODa23917
Clone ID Related Accession (Same CDS sequence)	XM_005159471.3 , NM_130974.3
Accession Version	NM_130974.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1329bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1553011200000
Organism	Danio rerio(zebrafish)
Product	TAP binding protein (tapasin), tandem duplicate 1 precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FP085393.7. On Jul 31, 2018 this sequence version replaced NM_130974.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AF137538.1, GFIL01040404.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGTCTGGAT TTTCGACCAT ATACAAGATA TCAATCATCG TATTTACATT GTGTTTTGGT 
GTTTGTGGTG CATGTCCGGT TCTGGAGTGC TGGTTTGTAC AAGAGAAGCC TGGTCATGGA 
GGAGGTTTAT CAACCCCAAT GAGTCAAGAG AAATCTCTTA TGTTCATCAG AACTGAAGCC 
TTCAGTGAAG AAATAAAGAC TGAACTGCAT CCTCCTGCAG ACATCAGCTC ATCCAGAGTC 
TACTATGTGA CTGATCCAGC AGGCACATTC TGCAGTGCTG CTCTGAATCC TCCTAAAGGC 
TCAGTAAATA AACCCAAATG TGAGATTAAC CCCTTCATGC CTCACGCCTC TATGGTCAGA 
TGGGCTTCTG CTCTCACTGA CTCCGCCCAG AGTCCAGTCT ACCTGCAAGC TGATTGGTTT 
TCAGTGGCGG CACAAGGCCT TGATGAACAG CTGACACTGT CCAATATTAT GAGAGCGCCT 
TTAGCTTCTA AAGACCCGAA AGTGATCCTC AGTGTGTCCA GCAAAACTCC AGTGGTTCGC 
TGTAGACTGG GAGAGCCGGT TCTGCTGGAC TGTGGGTTCT GGGTTGATCC GTCTTCTCCT 
CTTCACGGCT CTGGATTCTC CATCGAGTGG CGTTATCAGT TCAGGGGTGA AGGACGGCTG 
GTGCTCGCTT ACGACGGCAA GAATGATCGC TTTGCAGAGA CGTCAGAGAG CGGAGCTGAA 
ATGGACATCA CAGGCCTCTA TCAAACAGGC AACGTTTCTC TGATCCTGGA GGAATCTCAA 
GTCAGACACT CAGGAACTTA CATCTGCACA GTTTACCTTC CTCATCTGCT GGCACAGGTG 
GCTGTGGACC TGGAGATCGT TGAGCCTCCA TCTCTCTCCA TCCTCCCCTC TCCTCTTCCT 
CTGCTGGTCC CGGGACAGGT GCTGTCGGTT CAGTGTGAGG CGTCTGGTTT TGCTCCTCAC 
ACTCTGGATC TGGGCTGGGA GTTTACCGGG GCTGATGGGA AGTCCCTCTC TCTGGGTCAG 
GGCAGTGTAA CGGGTCACAG ACGGGCGTCT GATGGCACCT TCAGTCAGAG CAGCCGTCTG 
GAGCTCGACT CCACTAAACT GAGACTCGCT CGGGGCGGAG AGATCAGCTG TGTGGCCAAA 
CATGACGGAG GAACACGACG AGCCTCTGCT GCACTCAATG TCATCGGTGT CGCAGCTCCA 
TCTATTGAGG ACTCGATGGC GATGGTCGCT GTTGCTCTTC TTCTTTATGG CATGATCAAG 
TTTCTCTCCT GGACATTCAG CTCTTCTGAC TCCGGTGACT CTGAATTAAA TGATAAGAAG 
GAAAAATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571049.2
CDS	110..1438
Translation	MSGFSTIYKISIIVFTLCFGVCGACPVLECWFVQEKPGHGGGLSTPMSQEKSLMFIRTEAFSEEIKTELHPPADISSSRVYYVTDPAGTFCSAALNPPKGSVNKPKCEINPFMPHASMVRWASALTDSAQSPVYLQADWFSVAAQGLDEQLTLSNIMRAPLASKDPKVILSVSSKTPVVRCRLGEPVLLDCGFWVDPSSPLHGSGFSIEWRYQFRGEGRLVLAYDGKNDRFAETSESGAEMDITGLYQTGNVSLILEESQVRHSGTYICTVYLPHLLAQVAVDLEIVEPPSLSILPSPLPLLVPGQVLSVQCEASGFAPHTLDLGWEFTGADGKSLSLGQGSVTGHRRASDGTFSQSSRLELDSTKLRLARGGEISCVAKHDGGTRRASAALNVIGVAAPSIEDSMAMVAVALLLYGMIKFLSWTFSSSDSGDSELNDKKEK

Target ORF information:

RefSeq Version	NM_130974.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_130974.3

ORF Insert Sequence:

ATGTCTGGAT TTTCGACCAT ATACAAGATA TCAATCATCG TATTTACATT GTGTTTTGGT 
GTTTGTGGTG CATGTCCGGT TCTGGAGTGC TGGTTTGTAC AAGAGAAGCC TGGTCATGGA 
GGAGGTTTAT CAACCCCAAT GAGTCAAGAG AAATCTCTTA TGTTCATCAG AACTGAAGCC 
TTCAGTGAAG AAATAAAGAC TGAACTGCAT CCTCCTGCAG ACATCAGCTC ATCCAGAGTC 
TACTATGTGA CTGATCCAGC AGGCACATTC TGCAGTGCTG CTCTGAATCC TCCTAAAGGC 
TCAGTAAATA AACCCAAATG TGAGATTAAC CCCTTCATGC CTCACGCCTC TATGGTCAGA 
TGGGCTTCTG CTCTCACTGA CTCCGCCCAG AGTCCAGTCT ACCTGCAAGC TGATTGGTTT 
TCAGTGGCGG CACAAGGCCT TGATGAACAG CTGACACTGT CCAATATTAT GAGAGCGCCT 
TTAGCTTCTA AAGACCCGAA AGTGATCCTC AGTGTGTCCA GCAAAACTCC AGTGGTTCGC 
TGTAGACTGG GAGAGCCGGT TCTGCTGGAC TGTGGGTTCT GGGTTGATCC GTCTTCTCCT 
CTTCACGGCT CTGGATTCTC CATCGAGTGG CGTTATCAGT TCAGGGGTGA AGGACGGCTG 
GTGCTCGCTT ACGACGGCAA GAATGATCGC TTTGCAGAGA CGTCAGAGAG CGGAGCTGAA 
ATGGACATCA CAGGCCTCTA TCAAACAGGC AACGTTTCTC TGATCCTGGA GGAATCTCAA 
GTCAGACACT CAGGAACTTA CATCTGCACA GTTTACCTTC CTCATCTGCT GGCACAGGTG 
GCTGTGGACC TGGAGATCGT TGAGCCTCCA TCTCTCTCCA TCCTCCCCTC TCCTCTTCCT 
CTGCTGGTCC CGGGACAGGT GCTGTCGGTT CAGTGTGAGG CGTCTGGTTT TGCTCCTCAC 
ACTCTGGATC TGGGCTGGGA GTTTACCGGG GCTGATGGGA AGTCCCTCTC TCTGGGTCAG 
GGCAGTGTAA CGGGTCACAG ACGGGCGTCT GATGGCACCT TCAGTCAGAG CAGCCGTCTG 
GAGCTCGACT CCACTAAACT GAGACTCGCT CGGGGCGGAG AGATCAGCTG TGTGGCCAAA 
CATGACGGAG GAACACGACG AGCCTCTGCT GCACTCAATG TCATCGGTGT CGCAGCTCCA 
TCTATTGAGG ACTCGATGGC GATGGTCGCT GTTGCTCTTC TTCTTTATGG CATGATCAAG 
TTTCTCTCCT GGACATTCAG CTCTTCTGAC TCCGGTGACT CTGAATTAAA TGATAAGAAG 
GAAAAATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

tapbp.1 ( NM_130974.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571049.1 Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Price & Availability↑

CloneID	ODa31840
Clone ID Related Accession (Same CDS sequence)	NM_130974.1
Accession Version	NM_130974.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1332bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1501862400000
Organism	Danio rerio(zebrafish)
Product	TAP binding protein (tapasin), tandem duplicate 1 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF137538.1. ##Evidence-Data-START## Transcript exon combination :: AF137538.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGTCTGATA TTTCGACCGT ATTCAAGATA TCTGTCATCG CTTTTACATT GTTTTACGGT 
TCTTGTGGTT CTGGATGTCC GGTTCTGGAG TGCTGGTTTG TACAAGAGAA GCCTGGTCAT 
GGAGGAGGTT TATCAACCCC AATGAGTCAA GAGAAATCTC TCATATTTAT CAGGACTGAA 
GCCTACAGTG AAGAAATAAA GACTGAACTG CATCCTCCTG CAGACATCAG CTCATCCAGA 
GTTTACTATG TGACTGATCC AGCAGGGACG TTCTGCAGTG CTGCTCTGAA TCCTCCTAAA 
GGCTCAGTGA ATAAACCCAA ATGTGAGATT AACCCCTTCA TGCCTCACGC CTCCATGGTC 
AGATGGGCTT CTGCTCTCAC TGACTCCGCC CAGAGTCCAG TCTACCTGCA AGCTGATTGG 
TTTTCAGTGG CAGCACAAGG CCTTGATGAC CAGCTGACAC TGTCCAATAT TATGAGAGCA 
CCTTCAGCTT CTAAAGAACC AAAAGTGATC CTCAGTGTGT CCAGCAAAAC TCCAGTGGTT 
CGCTGTAGAC TGGGAGAGCC GGTTCTGCTG GACTGTGGCT TCTGGATTGA TCCATCTTCT 
CCTCTTCACG GGTCTGGATT CTCCATCGAG TGGCGTTATC AGTTCAGGGG TGAAGGACGG 
CTGGTGCTCG CTTACGACGG CAAGAACGAT CGCTTTGCAG AGACGTCAGA GAGCGGAGCT 
GAAATGGACA TCACAGGCCT CTATCAAACA GGCAACGCTT CTCTGATCCT GGAGGAATCT 
CAAGTCAGAC ACTCGGGAAC TTACATCTGC ACAGTTTACC TTCCTCATCT GCTGGCACAG 
GTGGCTGTGG ACCTGGAGAT TGTTGAGCCT CCATCTCTCT CCATCCTCCC CTCTCCTCTT 
CCTCTGCTGG TCCCGGGACA GGTGCTGTCG GTTCAGTGTG AGGCGTCTGG TTTTGCTCCT 
CACACTCTGG ATCTGGGCTG GGAGTTCACC GGGGCTGATG GGAAGTCCCT CTCTCTGGGT 
CAGGGCAGTG TAACGGGTCA CAGACGGGCG TCTGATGGCA CCTTCAGTCA GAGCAGCCGT 
CTGGAGCTGG ACTCCACTAA ACTGAGACTC GCTCGGGGCG GAGAGATCAG CTGTGTGGCC 
AAACATGACG GAGGAACACG ACGAGCCTCT GCTGCACTCA ATGTCATTGG TGTTGCAGCT 
CCGTCTATTG AGGACTCGAT GGCGATGGTT GCTGTTGCTC TTCTTCTTTA TGGCATGATC 
AAGTTTCTCT CCTGGACATT CAGCTCTTCT GACTCTGGTG ACTCTGAATT AAATGATAAG 
AAGGAGAAAT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571049.1
CDS	87..1418
Translation	MSDISTVFKISVIAFTLFYGSCGSGCPVLECWFVQEKPGHGGGLSTPMSQEKSLIFIRTEAYSEEIKTELHPPADISSSRVYYVTDPAGTFCSAALNPPKGSVNKPKCEINPFMPHASMVRWASALTDSAQSPVYLQADWFSVAAQGLDDQLTLSNIMRAPSASKEPKVILSVSSKTPVVRCRLGEPVLLDCGFWIDPSSPLHGSGFSIEWRYQFRGEGRLVLAYDGKNDRFAETSESGAEMDITGLYQTGNASLILEESQVRHSGTYICTVYLPHLLAQVAVDLEIVEPPSLSILPSPLPLLVPGQVLSVQCEASGFAPHTLDLGWEFTGADGKSLSLGQGSVTGHRRASDGTFSQSSRLELDSTKLRLARGGEISCVAKHDGGTRRASAALNVIGVAAPSIEDSMAMVAVALLLYGMIKFLSWTFSSSDSGDSELNDKKEK

Target ORF information:

RefSeq Version	NM_130974.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_130974.1

ORF Insert Sequence:

ATGTCTGATA TTTCGACCGT ATTCAAGATA TCTGTCATCG CTTTTACATT GTTTTACGGT 
TCTTGTGGTT CTGGATGTCC GGTTCTGGAG TGCTGGTTTG TACAAGAGAA GCCTGGTCAT 
GGAGGAGGTT TATCAACCCC AATGAGTCAA GAGAAATCTC TCATATTTAT CAGGACTGAA 
GCCTACAGTG AAGAAATAAA GACTGAACTG CATCCTCCTG CAGACATCAG CTCATCCAGA 
GTTTACTATG TGACTGATCC AGCAGGGACG TTCTGCAGTG CTGCTCTGAA TCCTCCTAAA 
GGCTCAGTGA ATAAACCCAA ATGTGAGATT AACCCCTTCA TGCCTCACGC CTCCATGGTC 
AGATGGGCTT CTGCTCTCAC TGACTCCGCC CAGAGTCCAG TCTACCTGCA AGCTGATTGG 
TTTTCAGTGG CAGCACAAGG CCTTGATGAC CAGCTGACAC TGTCCAATAT TATGAGAGCA 
CCTTCAGCTT CTAAAGAACC AAAAGTGATC CTCAGTGTGT CCAGCAAAAC TCCAGTGGTT 
CGCTGTAGAC TGGGAGAGCC GGTTCTGCTG GACTGTGGCT TCTGGATTGA TCCATCTTCT 
CCTCTTCACG GGTCTGGATT CTCCATCGAG TGGCGTTATC AGTTCAGGGG TGAAGGACGG 
CTGGTGCTCG CTTACGACGG CAAGAACGAT CGCTTTGCAG AGACGTCAGA GAGCGGAGCT 
GAAATGGACA TCACAGGCCT CTATCAAACA GGCAACGCTT CTCTGATCCT GGAGGAATCT 
CAAGTCAGAC ACTCGGGAAC TTACATCTGC ACAGTTTACC TTCCTCATCT GCTGGCACAG 
GTGGCTGTGG ACCTGGAGAT TGTTGAGCCT CCATCTCTCT CCATCCTCCC CTCTCCTCTT 
CCTCTGCTGG TCCCGGGACA GGTGCTGTCG GTTCAGTGTG AGGCGTCTGG TTTTGCTCCT 
CACACTCTGG ATCTGGGCTG GGAGTTCACC GGGGCTGATG GGAAGTCCCT CTCTCTGGGT 
CAGGGCAGTG TAACGGGTCA CAGACGGGCG TCTGATGGCA CCTTCAGTCA GAGCAGCCGT 
CTGGAGCTGG ACTCCACTAA ACTGAGACTC GCTCGGGGCG GAGAGATCAG CTGTGTGGCC 
AAACATGACG GAGGAACACG ACGAGCCTCT GCTGCACTCA ATGTCATTGG TGTTGCAGCT 
CCGTCTATTG AGGACTCGAT GGCGATGGTT GCTGTTGCTC TTCTTCTTTA TGGCATGATC 
AAGTTTCTCT CCTGGACATT CAGCTCTTCT GACTCTGGTG ACTCTGAATT AAATGATAAG 
AAGGAGAAAT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

tapbp.1 ( XM_005159471.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005159528.1 Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Price & Availability↑

CloneID	ODa23917
Clone ID Related Accession (Same CDS sequence)	XM_005159471.3 , NM_130974.3
Accession Version	XM_005159471.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1329bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1497369600000
Organism	Danio rerio(zebrafish)
Product	TAP binding protein (tapasin), tandem duplicate 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005159471.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCTGGAT TTTCGACCAT ATACAAGATA TCAATCATCG TATTTACATT GTGTTTTGGT 
GTTTGTGGTG CATGTCCGGT TCTGGAGTGC TGGTTTGTAC AAGAGAAGCC TGGTCATGGA 
GGAGGTTTAT CAACCCCAAT GAGTCAAGAG AAATCTCTTA TGTTCATCAG AACTGAAGCC 
TTCAGTGAAG AAATAAAGAC TGAACTGCAT CCTCCTGCAG ACATCAGCTC ATCCAGAGTC 
TACTATGTGA CTGATCCAGC AGGCACATTC TGCAGTGCTG CTCTGAATCC TCCTAAAGGC 
TCAGTAAATA AACCCAAATG TGAGATTAAC CCCTTCATGC CTCACGCCTC TATGGTCAGA 
TGGGCTTCTG CTCTCACTGA CTCCGCCCAG AGTCCAGTCT ACCTGCAAGC TGATTGGTTT 
TCAGTGGCGG CACAAGGCCT TGATGAACAG CTGACACTGT CCAATATTAT GAGAGCGCCT 
TTAGCTTCTA AAGACCCGAA AGTGATCCTC AGTGTGTCCA GCAAAACTCC AGTGGTTCGC 
TGTAGACTGG GAGAGCCGGT TCTGCTGGAC TGTGGGTTCT GGGTTGATCC GTCTTCTCCT 
CTTCACGGCT CTGGATTCTC CATCGAGTGG CGTTATCAGT TCAGGGGTGA AGGACGGCTG 
GTGCTCGCTT ACGACGGCAA GAATGATCGC TTTGCAGAGA CGTCAGAGAG CGGAGCTGAA 
ATGGACATCA CAGGCCTCTA TCAAACAGGC AACGTTTCTC TGATCCTGGA GGAATCTCAA 
GTCAGACACT CAGGAACTTA CATCTGCACA GTTTACCTTC CTCATCTGCT GGCACAGGTG 
GCTGTGGACC TGGAGATCGT TGAGCCTCCA TCTCTCTCCA TCCTCCCCTC TCCTCTTCCT 
CTGCTGGTCC CGGGACAGGT GCTGTCGGTT CAGTGTGAGG CGTCTGGTTT TGCTCCTCAC 
ACTCTGGATC TGGGCTGGGA GTTTACCGGG GCTGATGGGA AGTCCCTCTC TCTGGGTCAG 
GGCAGTGTAA CGGGTCACAG ACGGGCGTCT GATGGCACCT TCAGTCAGAG CAGCCGTCTG 
GAGCTCGACT CCACTAAACT GAGACTCGCT CGGGGCGGAG AGATCAGCTG TGTGGCCAAA 
CATGACGGAG GAACACGACG AGCCTCTGCT GCACTCAATG TCATCGGTGT CGCAGCTCCA 
TCTATTGAGG ACTCGATGGC GATGGTCGCT GTTGCTCTTC TTCTTTATGG CATGATCAAG 
TTTCTCTCCT GGACATTCAG CTCTTCTGAC TCCGGTGACT CTGAATTAAA TGATAAGAAG 
GAAAAATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005159528.1
CDS	105..1433
Translation	MSGFSTIYKISIIVFTLCFGVCGACPVLECWFVQEKPGHGGGLSTPMSQEKSLMFIRTEAFSEEIKTELHPPADISSSRVYYVTDPAGTFCSAALNPPKGSVNKPKCEINPFMPHASMVRWASALTDSAQSPVYLQADWFSVAAQGLDEQLTLSNIMRAPLASKDPKVILSVSSKTPVVRCRLGEPVLLDCGFWVDPSSPLHGSGFSIEWRYQFRGEGRLVLAYDGKNDRFAETSESGAEMDITGLYQTGNVSLILEESQVRHSGTYICTVYLPHLLAQVAVDLEIVEPPSLSILPSPLPLLVPGQVLSVQCEASGFAPHTLDLGWEFTGADGKSLSLGQGSVTGHRRASDGTFSQSSRLELDSTKLRLARGGEISCVAKHDGGTRRASAALNVIGVAAPSIEDSMAMVAVALLLYGMIKFLSWTFSSSDSGDSELNDKKEK

Target ORF information:

RefSeq Version	XM_005159471.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio TAP binding protein (tapasin), tandem duplicate 1 (tapbp.1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005159471.3

ORF Insert Sequence:

ATGTCTGGAT TTTCGACCAT ATACAAGATA TCAATCATCG TATTTACATT GTGTTTTGGT 
GTTTGTGGTG CATGTCCGGT TCTGGAGTGC TGGTTTGTAC AAGAGAAGCC TGGTCATGGA 
GGAGGTTTAT CAACCCCAAT GAGTCAAGAG AAATCTCTTA TGTTCATCAG AACTGAAGCC 
TTCAGTGAAG AAATAAAGAC TGAACTGCAT CCTCCTGCAG ACATCAGCTC ATCCAGAGTC 
TACTATGTGA CTGATCCAGC AGGCACATTC TGCAGTGCTG CTCTGAATCC TCCTAAAGGC 
TCAGTAAATA AACCCAAATG TGAGATTAAC CCCTTCATGC CTCACGCCTC TATGGTCAGA 
TGGGCTTCTG CTCTCACTGA CTCCGCCCAG AGTCCAGTCT ACCTGCAAGC TGATTGGTTT 
TCAGTGGCGG CACAAGGCCT TGATGAACAG CTGACACTGT CCAATATTAT GAGAGCGCCT 
TTAGCTTCTA AAGACCCGAA AGTGATCCTC AGTGTGTCCA GCAAAACTCC AGTGGTTCGC 
TGTAGACTGG GAGAGCCGGT TCTGCTGGAC TGTGGGTTCT GGGTTGATCC GTCTTCTCCT 
CTTCACGGCT CTGGATTCTC CATCGAGTGG CGTTATCAGT TCAGGGGTGA AGGACGGCTG 
GTGCTCGCTT ACGACGGCAA GAATGATCGC TTTGCAGAGA CGTCAGAGAG CGGAGCTGAA 
ATGGACATCA CAGGCCTCTA TCAAACAGGC AACGTTTCTC TGATCCTGGA GGAATCTCAA 
GTCAGACACT CAGGAACTTA CATCTGCACA GTTTACCTTC CTCATCTGCT GGCACAGGTG 
GCTGTGGACC TGGAGATCGT TGAGCCTCCA TCTCTCTCCA TCCTCCCCTC TCCTCTTCCT 
CTGCTGGTCC CGGGACAGGT GCTGTCGGTT CAGTGTGAGG CGTCTGGTTT TGCTCCTCAC 
ACTCTGGATC TGGGCTGGGA GTTTACCGGG GCTGATGGGA AGTCCCTCTC TCTGGGTCAG 
GGCAGTGTAA CGGGTCACAG ACGGGCGTCT GATGGCACCT TCAGTCAGAG CAGCCGTCTG 
GAGCTCGACT CCACTAAACT GAGACTCGCT CGGGGCGGAG AGATCAGCTG TGTGGCCAAA 
CATGACGGAG GAACACGACG AGCCTCTGCT GCACTCAATG TCATCGGTGT CGCAGCTCCA 
TCTATTGAGG ACTCGATGGC GATGGTCGCT GTTGCTCTTC TTCTTTATGG CATGATCAAG 
TTTCTCTCCT GGACATTCAG CTCTTCTGAC TCCGGTGACT CTGAATTAAA TGATAAGAAG 
GAAAAATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Characterization of immune-matched hematopoietic transplantation in zebrafish.
Blood117(16)4234-42(2011 Apr)
de Jong JL,Burns CE,Chen AT,Pugach E,Mayhall EA,Smith AC,Feldman HA,Zhou Y,Zon LI

Characterization of the six zebrafish clade B fibrillar procollagen genes, with evidence for evolutionarily conserved alternative splicing within the pro-alpha1(V) C-propeptide.
Matrix biology : journal of the International Society for Matrix Biology29(4)261-75(2010 May)
Hoffman GG,Branam AM,Huang G,Pelegri F,Cole WG,Wenstrup RM,Greenspan DS

A gain-of-function screen in zebrafish identifies a guanylate cyclase with a role in neuronal degeneration.
Molecular genetics and genomics : MGG281(5)551-63(2009 May)
Maddison LA,Lu J,Victoroff T,Scott E,Baier H,Chen W

Positive correlation between gene coexpression and positional clustering in the zebrafish genome.
BMC genomics1042(2009 Jan)
Ng YK,Wu W,Zhang L

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tapbp.1 cDNA ORF clone, Danio rerio(zebrafish)

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