| Gene Symbol | APTX |
| Entrez Gene ID | 359714 |
| Full Name | aprataxin |
| General protein information |
|
| Gene Type | protein-coding |
| Organism | Bos taurus(cattle) |
IVD Raw Materials
ORF » Species Summary » Bos taurus » APTX cDNA ORF clone
| Gene Symbol | APTX |
| Entrez Gene ID | 359714 |
| Full Name | aprataxin |
| General protein information |
|
| Gene Type | protein-coding |
| Organism | Bos taurus(cattle) |
| mRNA | Protein | Name |
|---|---|---|
| XM_010808070.2 | XP_010806372.1 | aprataxin isoform X2 |
| NM_182654.1 | NP_872595.1 | aprataxin |
| XM_005210296.2 | XP_005210353.1 | aprataxin isoform X3 |
| Mus musculus (house mouse) | Aptx | NP_079821.3 |
| Homo sapiens (human) | APTX | NP_001182177.1 |
| Pan troglodytes (chimpanzee) | APTX | XP_001158355.1 |
| Bos taurus (cattle) | APTX | NP_872595.1 |
| Rattus norvegicus (Norway rat) | Aptx | NP_683687.1 |
| Xenopus tropicalis (tropical clawed frog) | aptx | NP_991394.1 |
| Canis lupus familiaris (dog) | APTX | NP_001003355.1 |
| Danio rerio (zebrafish) | aptx | NP_999894.1 |
| Macaca mulatta (Rhesus monkey) | APTX | XP_002800109.1 |
| Gallus gallus (chicken) | APTX | XP_004949669.1 |
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP
BMC genomics6166(2005 Nov)
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle.
Smith TP, Grosse WM, Freking BA, Roberts AJ, Stone RT, Casas E, Wray JE, White J, Cho J, Fahrenkrug SC, Bennett GL, Heaton MP, Laegreid WW, Rohrer GA, Chitko-McKown CG, Pertea G, Holt I, Karamycheva S, Liang F, Quackenbush J, Keele JW
Genome research11(4)626-30(2001 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following APTX gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the APTX cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OBa41755 | |
| Clone ID Related Accession (Same CDS sequence) | NM_182654.1 | |
| Accession Version | NM_182654.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1071bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1577116800000 | |
| Organism | Bos taurus(cattle) | |
| Product | aprataxin | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY040778.1. On or before Jan 31, 2016 this sequence version replaced XM_015472602.1, XM_010808069.1, XM_005210300.1. Sequence Note: This sequence has been modified as follows: removed 28 bp suspected to be vector contamination from the 3' end. ##Evidence-Data-START## Transcript exon combination :: AY040778.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN05861862, SAMN05861941 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGAGTAACG TGAGCTTGTC GGCCTCAGCC GTCTCGAGAG TAATGATGCG GGTGTGCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_872595.1 |
| CDS | 7..1077 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_182654.1 |
1 | ATGAGTAACG TGAGCTTGTC GGCCTCAGCC GTCTCGAGAG TAATGATGCG GGTGTGCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OBa22198 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005210296.2 | |
| Accession Version | XM_005210296.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1044bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1453651200000 | |
| Organism | Bos taurus(cattle) | |
| Product | aprataxin isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104126.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_005210296.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTGGTCCA GAGTAATGAT GCGGGTGTGC TGGTTGGTGA GACAGGACAA CCGGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005210353.1 |
| CDS | 566..1609 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005210296.2 |
1 | ATGTGGTCCA GAGTAATGAT GCGGGTGTGC TGGTTGGTGA GACAGGACAA CCGGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OBa45615 | |
| Clone ID Related Accession (Same CDS sequence) | XM_010808070.2 | |
| Accession Version | XM_010808070.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1453651200000 | |
| Organism | Bos taurus(cattle) | |
| Product | aprataxin isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104126.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_010808070.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGATGCGGG TGTGCTGGTT GGTGAGACAG GACAACCGGC ACCAGCGAAT CAAACTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_010806372.1 |
| CDS | 124..1002 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_010808070.2 |
1 | ATGATGCGGG TGTGCTGGTT GGTGAGACAG GACAACCGGC ACCAGCGAAT CAAACTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A whole-genome assembly of the domestic cow, Bos taurus. |
Characterization of 954 bovine full-CDS cDNA sequences. |
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. |