Gene Symbol | pco102485 |
Entrez Gene ID | 100282592 |
Full Name | uncharacterized LOC100282592 |
Synonyms | GRMZM2G078022 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » pco102485 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001155500.1 | NP_001148972.1 | uncharacterized protein LOC100282592 |
NM_001157230.2 | NP_001150702.1 | uncharacterized protein LOC100282592 isoform 1 |
NM_001155500.2 | NP_001148972.2 | uncharacterized protein LOC100282592 isoform 2 |
XM_008678347.2 | XP_008676569.1 | uncharacterized protein LOC100282592 isoform X1 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
Gene discovery and annotation using LCM-454 transcriptome sequencing.
Emrich SJ, Barbazuk WB, Li L, Schnable PS
Genome research17(1)69-73(2007 Jan)
Characterization of the maize endosperm transcriptome and its comparison to the rice genome.
Lai J, Dey N, Kim CS, Bharti AK, Rudd S, Mayer KF, Larkins BA, Becraft P, Messing J
Genome research14(10A)1932-7(2004 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following pco102485 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pco102485 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa21210 | |
Clone ID Related Accession (Same CDS sequence) | NM_001155500.1 | |
Accession Version | NM_001155500.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1492531200000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100282592 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU961566.1. ##Evidence-Data-START## Transcript exon combination :: EU961566.1, AY103540.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096207, SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGTCGGC ACCCTGAGGT GAAGTGGGCT CAGAGGATCG ACAAGGTTTA CATCACTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001148972.1 |
CDS | 160..777 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGTCGGC ACCCTGAGGT GAAGTGGGCT CAGAGGATCG ACAAGGTTTA CATCACTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa28579 | |
Clone ID Related Accession (Same CDS sequence) | NM_001157230.2 , XM_008678347.2 | |
Accession Version | NM_001157230.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 636bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1556812800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100282592 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EU967936.1 and AY103540.1. On or before Aug 16, 2018 this sequence version replaced XM_008678347.2, NM_001157230.1. Transcript Variant: This variant (1) has the short first intron due to splice acceptor choice. ##Evidence-Data-START## Transcript exon combination :: EU967936.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGAGTGGCA TTGTCTTCTG TAGTCGGCAC CCTGAGGTGA AGTGGGCTCA GAGGATCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001150702.1 |
CDS | 115..750 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGTGGCA TTGTCTTCTG TAGTCGGCAC CCTGAGGTGA AGTGGGCTCA GAGGATCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa71088 | |
Clone ID Related Accession (Same CDS sequence) | NM_001155500.2 | |
Accession Version | NM_001155500.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1556812800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100282592 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FL318885.1, BT088111.1, CD527863.1 and DW959743.1. On Aug 16, 2018 this sequence version replaced NM_001155500.1. Transcript Variant: This variant (2) has the long first intron due to splice acceptor choice. ##Evidence-Data-START## Transcript exon combination :: EU961566.1, SRR3147022.15019.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096207, SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGTCGGC ACCCTGAGGT GAAGTGGGCT CAGAGGATCG ACAAGGTTTA CATCACTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001148972.2 |
CDS | 168..785 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGTCGGC ACCCTGAGGT GAAGTGGGCT CAGAGGATCG ACAAGGTTTA CATCACTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa28579 | |
Clone ID Related Accession (Same CDS sequence) | NM_001157230.2 , XM_008678347.2 | |
Accession Version | XM_008678347.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 636bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100282592 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678347.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGTGGCA TTGTCTTCTG TAGTCGGCAC CCTGAGGTGA AGTGGGCTCA GAGGATCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008676569.1 |
CDS | 163..798 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGTGGCA TTGTCTTCTG TAGTCGGCAC CCTGAGGTGA AGTGGGCTCA GAGGATCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |
Gene discovery and annotation using LCM-454 transcriptome sequencing. |
Characterization of the maize endosperm transcriptome and its comparison to the rice genome. |