Gene Symbol | LOC100279188 |
Entrez Gene ID | 100279188 |
Full Name | E3 ubiquitin-protein ligase XBAT32 |
Synonyms | GRMZM2G446313 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100279188 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008678839.2 | XP_008677061.1 | hypothetical protein isoform X2 |
XM_020551475.2 | XP_020407064.1 | hypothetical protein isoform X1 |
XM_020551476.1 | XP_020407065.1 | hypothetical protein isoform X1 |
NM_001152212.2 | NP_001145684.2 | uncharacterized protein LOC100279188 |
XM_020551476.2 | XP_020407065.1 | hypothetical protein isoform X1 |
XM_020551475.1 | XP_020407064.1 | hypothetical protein isoform X1 |
XM_008678839.3 | XP_008677061.1 | hypothetical protein isoform X2 |
NM_001152212.1 | NP_001145684.1 | hypothetical protein |
XM_023302196.1 | XP_023157964.1 | hypothetical protein isoform X2 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100279188 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100279188 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa08465 | |
Clone ID Related Accession (Same CDS sequence) | NM_001152212.1 | |
Accession Version | NM_001152212.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1494bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1492790400000 | |
Organism | Zea mays | |
Product | hypothetical protein | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT053775.1. ##Evidence-Data-START## Transcript exon combination :: BT053775.1, SRR3147047.4001.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001145684.1 |
CDS | 748..2241 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27381 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678839.2 , NM_001152212.2 , XM_008678839.3 , XM_023302196.1 | |
Accession Version | NM_001152212.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1494bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1555516800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279188 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DR963386.1, BT066716.1, BT066834.1 and BT053775.1. On Jun 9, 2017 this sequence version replaced NM_001152212.1. ##Evidence-Data-START## CDS exon combination :: BT053775.1, SRR3147022.2577.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001145684.2 |
CDS | 677..2170 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27381 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678839.2 , NM_001152212.2 , XM_008678839.3 , XM_023302196.1 | |
Accession Version | XM_008678839.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1494bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678839.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008677061.1 |
CDS | 859..2352 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27381 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678839.2 , NM_001152212.2 , XM_008678839.3 , XM_023302196.1 | |
Accession Version | XM_008678839.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1494bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008678839.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008677061.1 |
CDS | 856..2349 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27381 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678839.2 , NM_001152212.2 , XM_008678839.3 , XM_023302196.1 | |
Accession Version | XM_023302196.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1494bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023157964.1 |
CDS | 781..2274 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa60062 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551475.2 , XM_020551476.1 , XM_020551476.2 , XM_020551475.1 | |
Accession Version | XM_020551475.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_020551475.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020407064.1 |
CDS | 787..2370 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa60062 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551475.2 , XM_020551476.1 , XM_020551476.2 , XM_020551475.1 | |
Accession Version | XM_020551476.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020407065.1 |
CDS | 865..2448 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa60062 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551475.2 , XM_020551476.1 , XM_020551476.2 , XM_020551475.1 | |
Accession Version | XM_020551476.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_020551476.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020407065.1 |
CDS | 862..2445 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa60062 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551475.2 , XM_020551476.1 , XM_020551476.2 , XM_020551475.1 | |
Accession Version | XM_020551475.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | hypothetical protein isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020407064.1 |
CDS | 790..2373 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGTTCC TCAGCCTTGT GGGCAACTCC TTTGGGTGCT CTGCTTCCGG TGAGCGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Insights into corn genes derived from large-scale cDNA sequencing. |