LOC8055128 cDNA ORF clone, Sorghum bicolor(sorghum)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC8055128
Entrez Gene ID	8055128
Full Name	cellulose synthase-like protein D1
Gene Type	protein-coding
Organism	Sorghum bicolor(sorghum)

mRNA and Protein(s)

mRNA	Protein	Name
XM_002467380.1	XP_002467425.1	hypothetical protein
XM_002467380.2	XP_002467425.1	cellulose synthase-like protein D1

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The Sorghum bicolor genome and the diversification of grasses.
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS
Nature457(7229)551-6(2009 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC8055128 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC8055128 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OSc01002	XM_002467380.2 Latest version!	Sorghum bicolor cellulose synthase-like protein D1 (LOC8055128), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$559.30 $799.00
View Old Accession Versions >>
OSc01002	XM_002467380.1	Sorghum bicolor hypothetical protein, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$559.30 $799.00
Hide Old Accession Versions >>

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC8055128 ( XM_002467380.1 ) cDNA ORF clone, Sorghum bicolor(sorghum) -> XP_002467425.1 Sorghum bicolor hypothetical protein, mRNA.

Price & Availability↑

CloneID	OSc01002
Clone ID Related Accession (Same CDS sequence)	XM_002467380.1 , XM_002467380.2
Accession Version	XM_002467380.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3495bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1247328000000
Organism	Sorghum bicolor(Sorghum)
Product	hypothetical protein
Comment	PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_012870). COMPLETENESS: incomplete on both ends.

ATGGCGTCCA AGGGGATCCT CAAGAACAGC GGCTCCAGCC GCATGCCGCC GTCGCAGAGC 
GCCGGCAAGC CGCCCACCGC GCCCACGTCG GCGCCCACGG TCGTCTTCGG CCGCCGGACC 
GACTCTGGCC GCTTCATCAG CTACTCGCGC GACGACCTCG ACTCGGAGAT CAGCAGCGTC 
GACTTCCAGG ACTACCACGT CCACATCCCC ATGACGCCCG ACAACCAGCC CATGGACGAC 
GACGATGGCG GCGGCGGCGG CACGGCCAGG GCCGAGGAGC GCTACGTCTC CGGCTCGCTC 
TTCACCGGCG GCTTCAACAG CGTCACCCGC GCGCACGTCA TGGACAACAA GACCGACGAC 
GACGCAGCCG CCGCCGGCGG GCGCCGCGGC AAGGGACCCA GCGCGTGCAT GGTCGAGGGG 
TGCGACGCCA GGGCCATGCG CGACGCCCGC GGCGACGACG TCCTCCCCTG CGAGTGCGAC 
TTCAGGATCT GCGTCGACTG CTTCACCGAC GCCGTCAAGG CCGGCGGCGG CGCCTGCCCC 
GGGTGCAAGG AGCCTTACAA GAACACCGAG TGGGAGGACC TTGCCGCCGG TGGCGCGGCC 
GAGACCACGC GGGCGCTCTC GCTGCCCCGC GGGCCTGCGG GCGCCAATGG CCACCACAAG 
ATGGACAGGC GCCTGTCGTT GGTCAAGCAG ACCAACGTCA ACCAGTCCGG CGAGTTCGAT 
CATAACCGCT GGCTCTTCGA GACAAAGGGC ACCTATGGCT ATGGCAATGC CATCTGGCCC 
CAGGATGGCA CAGAAGACGA CACCGATGGC GGCGCCCCAG CTGGACCTGG GCACCCCAAG 
GAGCTCTTGA CCAAACCGTG GCGCCCGCTG ACCCGCAAGC TCAGGATTCC AGCTGCCGTC 
ATCAGTCCTT ACAGACTCCT CGTCCTGATC CGATTGGTCG CACTGGCCTT CTTCCTCATG 
TGGCGTATCA AGCACCAAAA TGAGGACGCC ATCTGGCTCT GGGGAATGTC AATTGTCTGC 
GAGCTCTGGT TTGCTTTCTC ATGGGTACTG GACCAGCTTC CAAAGCTGTG CCCCATCAAC 
CGTGCAACAG ACCTCTCCGT GCTCAAGGAG AAGTTTGAGA TGCCCACACC TAACAATCCA 
ACAGGCAAAT CCGATCTCCC TGGAATTGAC ATATTTGTGT CAACTGCTGA TCCGGAGAAG 
GAACCAGTCC TGGTCACTGC AAACACAATT CTCTCCATTC TCGCGGCTGA CTACCCTGTT 
GAGAAGCTTG CGTGTTATCT GTCAGATGAT GGAGGGGCAC TGCTCACCTT CGAAGCAATG 
GCTGAAGCAG CGAGCTTTGC CAATCTTTGG GTGCCATTCT GCAGGAAGCA TGACATTGAA 
CCCAGGAACC CTGACAGCTA CTTCAACCTC AAGAGAGATC CCTTCAAGAA CAAGGTGAAG 
CCAGACTTTG TCAAGGACAG AAGACGCATT AAGCGTGAAT ATGATGAGTT CAAGGTCCGT 
GTTAATGGCT TGCCAGATGC CATCCGCCGC CGCTCTGATG CATACCATGC TCGTGAAGAG 
ATCCAGGCAA TGAATCTTCA GAGGGAAAAA TTGAAGGGTG GCGGTGACGA ACCGTTTGAG 
CCAGTGAAGA TTCCCAAGGC AACATGGATG GCTGATGGCA CTCACTGGCC CGGTACCTGG 
CTCCAGCCTT CACAGGATCA TGCTCGAGGT GATCATGCAG GAATTATACA GGTTATGCTG 
AAACCACCAA GTGACATGCC GATGTACGGG AACATCAATG AAAAGACACC TCTTGACTTT 
GCAGGAGTGG ATACACGGCT TCCAATGCTG GTGTATGTAT CAAGAGAGAA GCGCCCAGGA 
TATGATCATA ATAAGAAAGC AGGTGCTATG AATGCATTAG TCCGTGCATC AGCAATCATG 
TCCAATGGTC CATTCATTCT TAATCTGGAT TGTGATCACT ATATCTACAA CTCAAAGGCC 
TTAAGGGAGG GCATGTGTTT CATGATGGAC CGTGGTGGTG ACCGCCTCTG CTATGTGCAG 
TTCCCACAGC GATTTGAAGG TATCGACCCT TCTGATCGTT ATGCCAATCA CAATACAGTT 
TTCTTCGATG TCAACATGCG CGCACTTGAT GGTCTTCAAG GACCAGTGTA CGTTGGTACT 
GGATGCCTCT TCCGTCGAAT TGCCCTTTAT GGCTTTGACC CACCCCGTTC CAAGGATCAC 
AGCCCAGGAT TCTGTAGTTG CTGTCTCCCA CGCCGCCGTA AGGCATCAGC TTCCAATGCT 
AACCCTGAGG AGACAATGGC TCTTCGCATG GGTGATTTTG ATGGAGACAG CATGAACCTT 
GCAACATTCC CAAAGAAGTT TGGAAACTCA AGCTTTCTGA TTGACTCCAT TCCAGTAGCA 
GAGTTCCAGG GTAGACCCTT GGCTGACCAT CCATCTGTGA AGAATGGGCG TCCACCTGGT 
GCTCTAACAA TCCCTCGTGA AATGCTAGAT GCATCCATCG TAGCAGAAGC AATCAGTGTG 
ATCTCATGTT GGTATGAGGA GAAGACAGAA TGGGGTATAC GGGTGGGGTG GATCTATGGG 
TCTGTCACTG AGGATGTTGT GACAGGGTAT CGCATGCACA ATCGTGGGTG GAAGTCAGTA 
TACTGTGTCA CACAGCGTGA TGCCTTCCGT GGCACTGCTC CTATCAACCT TACCGATCGG 
CTTCACCAGG TGCTTCGATG GGCCACTGGT TCGGTTGAAA TCTTCTTCTC CCGCAACAAT 
GCATTGTTTG CCAGCTCCAA GATGAAGGTG CTCCAAAGGA TTGCATACCT TAATGTTGGT 
ATCTATCCCT TCACATCCAT CTTCCTCATT GTCTACTGTT TCCTTCCAGC ACTCTCCCTC 
TTCTCAGGAC AGTTCATTGT GCAAACGCTC AACGTTACCT TCCTGACATA CCTACTTATC 
ATCACCATCA CTCTTTGCCT CTTGGCCATG TTGGAGATCA AGTGGTCTGG CATTGCTCTT 
GAGGAGTGGT GGCGAAATGA ACAATTCTGG CTCATTGGTG GAACTAGTGC CCACCTGGCT 
GCTGTGCTGC AGGGTCTTCT AAAAGTGATT GCAGGGATTG AGATCTCGTT TACACTCACT 
TCAAAACAAG TGGGTGATGA TGTAGAGGAT GAATTTGCAG AACTGTACAT AGTGAAATGG 
ACATCATTAA TGATACCACC GCTCACCATC ATCATGATCA ACCTTGTTGC CATTGCTGTT 
GGATTCAGCC GGACGATTTA CAGCACAATT CCACAATGGA GCAAGCTGCT TGGGGGAGTG 
TTTTTCAGCT TCTGGGTGCT TGCTCATTTG TATCCATTTG CAAAGGGGCT CATGGGAAGG 
AGAGGAAGGA CACCCACTAT TGTGTATGTC TGGTCTGGAC TCGTTTCCAT CACCATCTCA 
TTGCTCTGGA TTGCAATCAA GCCTCCATCA CAAGCTGCCA ACTCGCAATT CGGTGGGTCA 
TTTTCTTTCC CTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002467425.1
CDS	1..3495
Translation	MASKGILKNSGSSRMPPSQSAGKPPTAPTSAPTVVFGRRTDSGRFISYSRDDLDSEISSVDFQDYHVHIPMTPDNQPMDDDDGGGGGTARAEERYVSGSLFTGGFNSVTRAHVMDNKTDDDAAAAGGRRGKGPSACMVEGCDARAMRDARGDDVLPCECDFRICVDCFTDAVKAGGGACPGCKEPYKNTEWEDLAAGGAAETTRALSLPRGPAGANGHHKMDRRLSLVKQTNVNQSGEFDHNRWLFETKGTYGYGNAIWPQDGTEDDTDGGAPAGPGHPKELLTKPWRPLTRKLRIPAAVISPYRLLVLIRLVALAFFLMWRIKHQNEDAIWLWGMSIVCELWFAFSWVLDQLPKLCPINRATDLSVLKEKFEMPTPNNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPDSYFNLKRDPFKNKVKPDFVKDRRRIKREYDEFKVRVNGLPDAIRRRSDAYHAREEIQAMNLQREKLKGGGDEPFEPVKIPKATWMADGTHWPGTWLQPSQDHARGDHAGIIQVMLKPPSDMPMYGNINEKTPLDFAGVDTRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKDHSPGFCSCCLPRRRKASASNANPEETMALRMGDFDGDSMNLATFPKKFGNSSFLIDSIPVAEFQGRPLADHPSVKNGRPPGALTIPREMLDASIVAEAISVISCWYEEKTEWGIRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTQRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQVGDDVEDEFAELYIVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVSITISLLWIAIKPPSQAANSQFGGSFSFP

Target ORF information:

RefSeq Version	XM_002467380.1
Organism	Sorghum bicolor(Sorghum)
Definition	Sorghum bicolor hypothetical protein, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002467380.1

ORF Insert Sequence:

ATGGCGTCCA AGGGGATCCT CAAGAACAGC GGCTCCAGCC GCATGCCGCC GTCGCAGAGC 
GCCGGCAAGC CGCCCACCGC GCCCACGTCG GCGCCCACGG TCGTCTTCGG CCGCCGGACC 
GACTCTGGCC GCTTCATCAG CTACTCGCGC GACGACCTCG ACTCGGAGAT CAGCAGCGTC 
GACTTCCAGG ACTACCACGT CCACATCCCC ATGACGCCCG ACAACCAGCC CATGGACGAC 
GACGATGGCG GCGGCGGCGG CACGGCCAGG GCCGAGGAGC GCTACGTCTC CGGCTCGCTC 
TTCACCGGCG GCTTCAACAG CGTCACCCGC GCGCACGTCA TGGACAACAA GACCGACGAC 
GACGCAGCCG CCGCCGGCGG GCGCCGCGGC AAGGGACCCA GCGCGTGCAT GGTCGAGGGG 
TGCGACGCCA GGGCCATGCG CGACGCCCGC GGCGACGACG TCCTCCCCTG CGAGTGCGAC 
TTCAGGATCT GCGTCGACTG CTTCACCGAC GCCGTCAAGG CCGGCGGCGG CGCCTGCCCC 
GGGTGCAAGG AGCCTTACAA GAACACCGAG TGGGAGGACC TTGCCGCCGG TGGCGCGGCC 
GAGACCACGC GGGCGCTCTC GCTGCCCCGC GGGCCTGCGG GCGCCAATGG CCACCACAAG 
ATGGACAGGC GCCTGTCGTT GGTCAAGCAG ACCAACGTCA ACCAGTCCGG CGAGTTCGAT 
CATAACCGCT GGCTCTTCGA GACAAAGGGC ACCTATGGCT ATGGCAATGC CATCTGGCCC 
CAGGATGGCA CAGAAGACGA CACCGATGGC GGCGCCCCAG CTGGACCTGG GCACCCCAAG 
GAGCTCTTGA CCAAACCGTG GCGCCCGCTG ACCCGCAAGC TCAGGATTCC AGCTGCCGTC 
ATCAGTCCTT ACAGACTCCT CGTCCTGATC CGATTGGTCG CACTGGCCTT CTTCCTCATG 
TGGCGTATCA AGCACCAAAA TGAGGACGCC ATCTGGCTCT GGGGAATGTC AATTGTCTGC 
GAGCTCTGGT TTGCTTTCTC ATGGGTACTG GACCAGCTTC CAAAGCTGTG CCCCATCAAC 
CGTGCAACAG ACCTCTCCGT GCTCAAGGAG AAGTTTGAGA TGCCCACACC TAACAATCCA 
ACAGGCAAAT CCGATCTCCC TGGAATTGAC ATATTTGTGT CAACTGCTGA TCCGGAGAAG 
GAACCAGTCC TGGTCACTGC AAACACAATT CTCTCCATTC TCGCGGCTGA CTACCCTGTT 
GAGAAGCTTG CGTGTTATCT GTCAGATGAT GGAGGGGCAC TGCTCACCTT CGAAGCAATG 
GCTGAAGCAG CGAGCTTTGC CAATCTTTGG GTGCCATTCT GCAGGAAGCA TGACATTGAA 
CCCAGGAACC CTGACAGCTA CTTCAACCTC AAGAGAGATC CCTTCAAGAA CAAGGTGAAG 
CCAGACTTTG TCAAGGACAG AAGACGCATT AAGCGTGAAT ATGATGAGTT CAAGGTCCGT 
GTTAATGGCT TGCCAGATGC CATCCGCCGC CGCTCTGATG CATACCATGC TCGTGAAGAG 
ATCCAGGCAA TGAATCTTCA GAGGGAAAAA TTGAAGGGTG GCGGTGACGA ACCGTTTGAG 
CCAGTGAAGA TTCCCAAGGC AACATGGATG GCTGATGGCA CTCACTGGCC CGGTACCTGG 
CTCCAGCCTT CACAGGATCA TGCTCGAGGT GATCATGCAG GAATTATACA GGTTATGCTG 
AAACCACCAA GTGACATGCC GATGTACGGG AACATCAATG AAAAGACACC TCTTGACTTT 
GCAGGAGTGG ATACACGGCT TCCAATGCTG GTGTATGTAT CAAGAGAGAA GCGCCCAGGA 
TATGATCATA ATAAGAAAGC AGGTGCTATG AATGCATTAG TCCGTGCATC AGCAATCATG 
TCCAATGGTC CATTCATTCT TAATCTGGAT TGTGATCACT ATATCTACAA CTCAAAGGCC 
TTAAGGGAGG GCATGTGTTT CATGATGGAC CGTGGTGGTG ACCGCCTCTG CTATGTGCAG 
TTCCCACAGC GATTTGAAGG TATCGACCCT TCTGATCGTT ATGCCAATCA CAATACAGTT 
TTCTTCGATG TCAACATGCG CGCACTTGAT GGTCTTCAAG GACCAGTGTA CGTTGGTACT 
GGATGCCTCT TCCGTCGAAT TGCCCTTTAT GGCTTTGACC CACCCCGTTC CAAGGATCAC 
AGCCCAGGAT TCTGTAGTTG CTGTCTCCCA CGCCGCCGTA AGGCATCAGC TTCCAATGCT 
AACCCTGAGG AGACAATGGC TCTTCGCATG GGTGATTTTG ATGGAGACAG CATGAACCTT 
GCAACATTCC CAAAGAAGTT TGGAAACTCA AGCTTTCTGA TTGACTCCAT TCCAGTAGCA 
GAGTTCCAGG GTAGACCCTT GGCTGACCAT CCATCTGTGA AGAATGGGCG TCCACCTGGT 
GCTCTAACAA TCCCTCGTGA AATGCTAGAT GCATCCATCG TAGCAGAAGC AATCAGTGTG 
ATCTCATGTT GGTATGAGGA GAAGACAGAA TGGGGTATAC GGGTGGGGTG GATCTATGGG 
TCTGTCACTG AGGATGTTGT GACAGGGTAT CGCATGCACA ATCGTGGGTG GAAGTCAGTA 
TACTGTGTCA CACAGCGTGA TGCCTTCCGT GGCACTGCTC CTATCAACCT TACCGATCGG 
CTTCACCAGG TGCTTCGATG GGCCACTGGT TCGGTTGAAA TCTTCTTCTC CCGCAACAAT 
GCATTGTTTG CCAGCTCCAA GATGAAGGTG CTCCAAAGGA TTGCATACCT TAATGTTGGT 
ATCTATCCCT TCACATCCAT CTTCCTCATT GTCTACTGTT TCCTTCCAGC ACTCTCCCTC 
TTCTCAGGAC AGTTCATTGT GCAAACGCTC AACGTTACCT TCCTGACATA CCTACTTATC 
ATCACCATCA CTCTTTGCCT CTTGGCCATG TTGGAGATCA AGTGGTCTGG CATTGCTCTT 
GAGGAGTGGT GGCGAAATGA ACAATTCTGG CTCATTGGTG GAACTAGTGC CCACCTGGCT 
GCTGTGCTGC AGGGTCTTCT AAAAGTGATT GCAGGGATTG AGATCTCGTT TACACTCACT 
TCAAAACAAG TGGGTGATGA TGTAGAGGAT GAATTTGCAG AACTGTACAT AGTGAAATGG 
ACATCATTAA TGATACCACC GCTCACCATC ATCATGATCA ACCTTGTTGC CATTGCTGTT 
GGATTCAGCC GGACGATTTA CAGCACAATT CCACAATGGA GCAAGCTGCT TGGGGGAGTG 
TTTTTCAGCT TCTGGGTGCT TGCTCATTTG TATCCATTTG CAAAGGGGCT CATGGGAAGG 
AGAGGAAGGA CACCCACTAT TGTGTATGTC TGGTCTGGAC TCGTTTCCAT CACCATCTCA 
TTGCTCTGGA TTGCAATCAA GCCTCCATCA CAAGCTGCCA ACTCGCAATT CGGTGGGTCA 
TTTTCTTTCC CTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC8055128 ( XM_002467380.2 ) cDNA ORF clone, Sorghum bicolor(sorghum) -> XP_002467425.1 Sorghum bicolor cellulose synthase-like protein D1 (LOC8055128), mRNA.

Price & Availability↑

CloneID	OSc01002
Clone ID Related Accession (Same CDS sequence)	XM_002467380.1 , XM_002467380.2
Accession Version	XM_002467380.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3495bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1497196800000
Organism	Sorghum bicolor(sorghum)
Product	cellulose synthase-like protein D1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_012870.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 13, 2017 this sequence version replaced XM_002467380.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sorghum bicolor Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCGTCCA AGGGGATCCT CAAGAACAGC GGCTCCAGCC GCATGCCGCC GTCGCAGAGC 
GCCGGCAAGC CGCCCACCGC GCCCACGTCG GCGCCCACGG TCGTCTTCGG CCGCCGGACC 
GACTCTGGCC GCTTCATCAG CTACTCGCGC GACGACCTCG ACTCGGAGAT CAGCAGCGTC 
GACTTCCAGG ACTACCACGT CCACATCCCC ATGACGCCCG ACAACCAGCC CATGGACGAC 
GACGATGGCG GCGGCGGCGG CACGGCCAGG GCCGAGGAGC GCTACGTCTC CGGCTCGCTC 
TTCACCGGCG GCTTCAACAG CGTCACCCGC GCGCACGTCA TGGACAACAA GACCGACGAC 
GACGCAGCCG CCGCCGGCGG GCGCCGCGGC AAGGGACCCA GCGCGTGCAT GGTCGAGGGG 
TGCGACGCCA GGGCCATGCG CGACGCCCGC GGCGACGACG TCCTCCCCTG CGAGTGCGAC 
TTCAGGATCT GCGTCGACTG CTTCACCGAC GCCGTCAAGG CCGGCGGCGG CGCCTGCCCC 
GGGTGCAAGG AGCCTTACAA GAACACCGAG TGGGAGGACC TTGCCGCCGG TGGCGCGGCC 
GAGACCACGC GGGCGCTCTC GCTGCCCCGC GGGCCTGCGG GCGCCAATGG CCACCACAAG 
ATGGACAGGC GCCTGTCGTT GGTCAAGCAG ACCAACGTCA ACCAGTCCGG CGAGTTCGAT 
CATAACCGCT GGCTCTTCGA GACAAAGGGC ACCTATGGCT ATGGCAATGC CATCTGGCCC 
CAGGATGGCA CAGAAGACGA CACCGATGGC GGCGCCCCAG CTGGACCTGG GCACCCCAAG 
GAGCTCTTGA CCAAACCGTG GCGCCCGCTG ACCCGCAAGC TCAGGATTCC AGCTGCCGTC 
ATCAGTCCTT ACAGACTCCT CGTCCTGATC CGATTGGTCG CACTGGCCTT CTTCCTCATG 
TGGCGTATCA AGCACCAAAA TGAGGACGCC ATCTGGCTCT GGGGAATGTC AATTGTCTGC 
GAGCTCTGGT TTGCTTTCTC ATGGGTACTG GACCAGCTTC CAAAGCTGTG CCCCATCAAC 
CGTGCAACAG ACCTCTCCGT GCTCAAGGAG AAGTTTGAGA TGCCCACACC TAACAATCCA 
ACAGGCAAAT CCGATCTCCC TGGAATTGAC ATATTTGTGT CAACTGCTGA TCCGGAGAAG 
GAACCAGTCC TGGTCACTGC AAACACAATT CTCTCCATTC TCGCGGCTGA CTACCCTGTT 
GAGAAGCTTG CGTGTTATCT GTCAGATGAT GGAGGGGCAC TGCTCACCTT CGAAGCAATG 
GCTGAAGCAG CGAGCTTTGC CAATCTTTGG GTGCCATTCT GCAGGAAGCA TGACATTGAA 
CCCAGGAACC CTGACAGCTA CTTCAACCTC AAGAGAGATC CCTTCAAGAA CAAGGTGAAG 
CCAGACTTTG TCAAGGACAG AAGACGCATT AAGCGTGAAT ATGATGAGTT CAAGGTCCGT 
GTTAATGGCT TGCCAGATGC CATCCGCCGC CGCTCTGATG CATACCATGC TCGTGAAGAG 
ATCCAGGCAA TGAATCTTCA GAGGGAAAAA TTGAAGGGTG GCGGTGACGA ACCGTTTGAG 
CCAGTGAAGA TTCCCAAGGC AACATGGATG GCTGATGGCA CTCACTGGCC CGGTACCTGG 
CTCCAGCCTT CACAGGATCA TGCTCGAGGT GATCATGCAG GAATTATACA GGTTATGCTG 
AAACCACCAA GTGACATGCC GATGTACGGG AACATCAATG AAAAGACACC TCTTGACTTT 
GCAGGAGTGG ATACACGGCT TCCAATGCTG GTGTATGTAT CAAGAGAGAA GCGCCCAGGA 
TATGATCATA ATAAGAAAGC AGGTGCTATG AATGCATTAG TCCGTGCATC AGCAATCATG 
TCCAATGGTC CATTCATTCT TAATCTGGAT TGTGATCACT ATATCTACAA CTCAAAGGCC 
TTAAGGGAGG GCATGTGTTT CATGATGGAC CGTGGTGGTG ACCGCCTCTG CTATGTGCAG 
TTCCCACAGC GATTTGAAGG TATCGACCCT TCTGATCGTT ATGCCAATCA CAATACAGTT 
TTCTTCGATG TCAACATGCG CGCACTTGAT GGTCTTCAAG GACCAGTGTA CGTTGGTACT 
GGATGCCTCT TCCGTCGAAT TGCCCTTTAT GGCTTTGACC CACCCCGTTC CAAGGATCAC 
AGCCCAGGAT TCTGTAGTTG CTGTCTCCCA CGCCGCCGTA AGGCATCAGC TTCCAATGCT 
AACCCTGAGG AGACAATGGC TCTTCGCATG GGTGATTTTG ATGGAGACAG CATGAACCTT 
GCAACATTCC CAAAGAAGTT TGGAAACTCA AGCTTTCTGA TTGACTCCAT TCCAGTAGCA 
GAGTTCCAGG GTAGACCCTT GGCTGACCAT CCATCTGTGA AGAATGGGCG TCCACCTGGT 
GCTCTAACAA TCCCTCGTGA AATGCTAGAT GCATCCATCG TAGCAGAAGC AATCAGTGTG 
ATCTCATGTT GGTATGAGGA GAAGACAGAA TGGGGTATAC GGGTGGGGTG GATCTATGGG 
TCTGTCACTG AGGATGTTGT GACAGGGTAT CGCATGCACA ATCGTGGGTG GAAGTCAGTA 
TACTGTGTCA CACAGCGTGA TGCCTTCCGT GGCACTGCTC CTATCAACCT TACCGATCGG 
CTTCACCAGG TGCTTCGATG GGCCACTGGT TCGGTTGAAA TCTTCTTCTC CCGCAACAAT 
GCATTGTTTG CCAGCTCCAA GATGAAGGTG CTCCAAAGGA TTGCATACCT TAATGTTGGT 
ATCTATCCCT TCACATCCAT CTTCCTCATT GTCTACTGTT TCCTTCCAGC ACTCTCCCTC 
TTCTCAGGAC AGTTCATTGT GCAAACGCTC AACGTTACCT TCCTGACATA CCTACTTATC 
ATCACCATCA CTCTTTGCCT CTTGGCCATG TTGGAGATCA AGTGGTCTGG CATTGCTCTT 
GAGGAGTGGT GGCGAAATGA ACAATTCTGG CTCATTGGTG GAACTAGTGC CCACCTGGCT 
GCTGTGCTGC AGGGTCTTCT AAAAGTGATT GCAGGGATTG AGATCTCGTT TACACTCACT 
TCAAAACAAG TGGGTGATGA TGTAGAGGAT GAATTTGCAG AACTGTACAT AGTGAAATGG 
ACATCATTAA TGATACCACC GCTCACCATC ATCATGATCA ACCTTGTTGC CATTGCTGTT 
GGATTCAGCC GGACGATTTA CAGCACAATT CCACAATGGA GCAAGCTGCT TGGGGGAGTG 
TTTTTCAGCT TCTGGGTGCT TGCTCATTTG TATCCATTTG CAAAGGGGCT CATGGGAAGG 
AGAGGAAGGA CACCCACTAT TGTGTATGTC TGGTCTGGAC TCGTTTCCAT CACCATCTCA 
TTGCTCTGGA TTGCAATCAA GCCTCCATCA CAAGCTGCCA ACTCGCAATT CGGTGGGTCA 
TTTTCTTTCC CTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002467425.1
CDS	748..4242
Translation	MASKGILKNSGSSRMPPSQSAGKPPTAPTSAPTVVFGRRTDSGRFISYSRDDLDSEISSVDFQDYHVHIPMTPDNQPMDDDDGGGGGTARAEERYVSGSLFTGGFNSVTRAHVMDNKTDDDAAAAGGRRGKGPSACMVEGCDARAMRDARGDDVLPCECDFRICVDCFTDAVKAGGGACPGCKEPYKNTEWEDLAAGGAAETTRALSLPRGPAGANGHHKMDRRLSLVKQTNVNQSGEFDHNRWLFETKGTYGYGNAIWPQDGTEDDTDGGAPAGPGHPKELLTKPWRPLTRKLRIPAAVISPYRLLVLIRLVALAFFLMWRIKHQNEDAIWLWGMSIVCELWFAFSWVLDQLPKLCPINRATDLSVLKEKFEMPTPNNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPDSYFNLKRDPFKNKVKPDFVKDRRRIKREYDEFKVRVNGLPDAIRRRSDAYHAREEIQAMNLQREKLKGGGDEPFEPVKIPKATWMADGTHWPGTWLQPSQDHARGDHAGIIQVMLKPPSDMPMYGNINEKTPLDFAGVDTRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKDHSPGFCSCCLPRRRKASASNANPEETMALRMGDFDGDSMNLATFPKKFGNSSFLIDSIPVAEFQGRPLADHPSVKNGRPPGALTIPREMLDASIVAEAISVISCWYEEKTEWGIRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTQRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQVGDDVEDEFAELYIVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVSITISLLWIAIKPPSQAANSQFGGSFSFP

Target ORF information:

RefSeq Version	XM_002467380.2
Organism	Sorghum bicolor(sorghum)
Definition	Sorghum bicolor cellulose synthase-like protein D1 (LOC8055128), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002467380.2

ORF Insert Sequence:

ATGGCGTCCA AGGGGATCCT CAAGAACAGC GGCTCCAGCC GCATGCCGCC GTCGCAGAGC 
GCCGGCAAGC CGCCCACCGC GCCCACGTCG GCGCCCACGG TCGTCTTCGG CCGCCGGACC 
GACTCTGGCC GCTTCATCAG CTACTCGCGC GACGACCTCG ACTCGGAGAT CAGCAGCGTC 
GACTTCCAGG ACTACCACGT CCACATCCCC ATGACGCCCG ACAACCAGCC CATGGACGAC 
GACGATGGCG GCGGCGGCGG CACGGCCAGG GCCGAGGAGC GCTACGTCTC CGGCTCGCTC 
TTCACCGGCG GCTTCAACAG CGTCACCCGC GCGCACGTCA TGGACAACAA GACCGACGAC 
GACGCAGCCG CCGCCGGCGG GCGCCGCGGC AAGGGACCCA GCGCGTGCAT GGTCGAGGGG 
TGCGACGCCA GGGCCATGCG CGACGCCCGC GGCGACGACG TCCTCCCCTG CGAGTGCGAC 
TTCAGGATCT GCGTCGACTG CTTCACCGAC GCCGTCAAGG CCGGCGGCGG CGCCTGCCCC 
GGGTGCAAGG AGCCTTACAA GAACACCGAG TGGGAGGACC TTGCCGCCGG TGGCGCGGCC 
GAGACCACGC GGGCGCTCTC GCTGCCCCGC GGGCCTGCGG GCGCCAATGG CCACCACAAG 
ATGGACAGGC GCCTGTCGTT GGTCAAGCAG ACCAACGTCA ACCAGTCCGG CGAGTTCGAT 
CATAACCGCT GGCTCTTCGA GACAAAGGGC ACCTATGGCT ATGGCAATGC CATCTGGCCC 
CAGGATGGCA CAGAAGACGA CACCGATGGC GGCGCCCCAG CTGGACCTGG GCACCCCAAG 
GAGCTCTTGA CCAAACCGTG GCGCCCGCTG ACCCGCAAGC TCAGGATTCC AGCTGCCGTC 
ATCAGTCCTT ACAGACTCCT CGTCCTGATC CGATTGGTCG CACTGGCCTT CTTCCTCATG 
TGGCGTATCA AGCACCAAAA TGAGGACGCC ATCTGGCTCT GGGGAATGTC AATTGTCTGC 
GAGCTCTGGT TTGCTTTCTC ATGGGTACTG GACCAGCTTC CAAAGCTGTG CCCCATCAAC 
CGTGCAACAG ACCTCTCCGT GCTCAAGGAG AAGTTTGAGA TGCCCACACC TAACAATCCA 
ACAGGCAAAT CCGATCTCCC TGGAATTGAC ATATTTGTGT CAACTGCTGA TCCGGAGAAG 
GAACCAGTCC TGGTCACTGC AAACACAATT CTCTCCATTC TCGCGGCTGA CTACCCTGTT 
GAGAAGCTTG CGTGTTATCT GTCAGATGAT GGAGGGGCAC TGCTCACCTT CGAAGCAATG 
GCTGAAGCAG CGAGCTTTGC CAATCTTTGG GTGCCATTCT GCAGGAAGCA TGACATTGAA 
CCCAGGAACC CTGACAGCTA CTTCAACCTC AAGAGAGATC CCTTCAAGAA CAAGGTGAAG 
CCAGACTTTG TCAAGGACAG AAGACGCATT AAGCGTGAAT ATGATGAGTT CAAGGTCCGT 
GTTAATGGCT TGCCAGATGC CATCCGCCGC CGCTCTGATG CATACCATGC TCGTGAAGAG 
ATCCAGGCAA TGAATCTTCA GAGGGAAAAA TTGAAGGGTG GCGGTGACGA ACCGTTTGAG 
CCAGTGAAGA TTCCCAAGGC AACATGGATG GCTGATGGCA CTCACTGGCC CGGTACCTGG 
CTCCAGCCTT CACAGGATCA TGCTCGAGGT GATCATGCAG GAATTATACA GGTTATGCTG 
AAACCACCAA GTGACATGCC GATGTACGGG AACATCAATG AAAAGACACC TCTTGACTTT 
GCAGGAGTGG ATACACGGCT TCCAATGCTG GTGTATGTAT CAAGAGAGAA GCGCCCAGGA 
TATGATCATA ATAAGAAAGC AGGTGCTATG AATGCATTAG TCCGTGCATC AGCAATCATG 
TCCAATGGTC CATTCATTCT TAATCTGGAT TGTGATCACT ATATCTACAA CTCAAAGGCC 
TTAAGGGAGG GCATGTGTTT CATGATGGAC CGTGGTGGTG ACCGCCTCTG CTATGTGCAG 
TTCCCACAGC GATTTGAAGG TATCGACCCT TCTGATCGTT ATGCCAATCA CAATACAGTT 
TTCTTCGATG TCAACATGCG CGCACTTGAT GGTCTTCAAG GACCAGTGTA CGTTGGTACT 
GGATGCCTCT TCCGTCGAAT TGCCCTTTAT GGCTTTGACC CACCCCGTTC CAAGGATCAC 
AGCCCAGGAT TCTGTAGTTG CTGTCTCCCA CGCCGCCGTA AGGCATCAGC TTCCAATGCT 
AACCCTGAGG AGACAATGGC TCTTCGCATG GGTGATTTTG ATGGAGACAG CATGAACCTT 
GCAACATTCC CAAAGAAGTT TGGAAACTCA AGCTTTCTGA TTGACTCCAT TCCAGTAGCA 
GAGTTCCAGG GTAGACCCTT GGCTGACCAT CCATCTGTGA AGAATGGGCG TCCACCTGGT 
GCTCTAACAA TCCCTCGTGA AATGCTAGAT GCATCCATCG TAGCAGAAGC AATCAGTGTG 
ATCTCATGTT GGTATGAGGA GAAGACAGAA TGGGGTATAC GGGTGGGGTG GATCTATGGG 
TCTGTCACTG AGGATGTTGT GACAGGGTAT CGCATGCACA ATCGTGGGTG GAAGTCAGTA 
TACTGTGTCA CACAGCGTGA TGCCTTCCGT GGCACTGCTC CTATCAACCT TACCGATCGG 
CTTCACCAGG TGCTTCGATG GGCCACTGGT TCGGTTGAAA TCTTCTTCTC CCGCAACAAT 
GCATTGTTTG CCAGCTCCAA GATGAAGGTG CTCCAAAGGA TTGCATACCT TAATGTTGGT 
ATCTATCCCT TCACATCCAT CTTCCTCATT GTCTACTGTT TCCTTCCAGC ACTCTCCCTC 
TTCTCAGGAC AGTTCATTGT GCAAACGCTC AACGTTACCT TCCTGACATA CCTACTTATC 
ATCACCATCA CTCTTTGCCT CTTGGCCATG TTGGAGATCA AGTGGTCTGG CATTGCTCTT 
GAGGAGTGGT GGCGAAATGA ACAATTCTGG CTCATTGGTG GAACTAGTGC CCACCTGGCT 
GCTGTGCTGC AGGGTCTTCT AAAAGTGATT GCAGGGATTG AGATCTCGTT TACACTCACT 
TCAAAACAAG TGGGTGATGA TGTAGAGGAT GAATTTGCAG AACTGTACAT AGTGAAATGG 
ACATCATTAA TGATACCACC GCTCACCATC ATCATGATCA ACCTTGTTGC CATTGCTGTT 
GGATTCAGCC GGACGATTTA CAGCACAATT CCACAATGGA GCAAGCTGCT TGGGGGAGTG 
TTTTTCAGCT TCTGGGTGCT TGCTCATTTG TATCCATTTG CAAAGGGGCT CATGGGAAGG 
AGAGGAAGGA CACCCACTAT TGTGTATGTC TGGTCTGGAC TCGTTTCCAT CACCATCTCA 
TTGCTCTGGA TTGCAATCAA GCCTCCATCA CAAGCTGCCA ACTCGCAATT CGGTGGGTCA 
TTTTCTTTCC CTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The Sorghum bicolor genome and the diversification of grasses.
Nature457(7229)551-6(2009 Jan)
Paterson AH,Bowers JE,Bruggmann R,Dubchak I,Grimwood J,Gundlach H,Haberer G,Hellsten U,Mitros T,Poliakov A,Schmutz J,Spannagl M,Tang H,Wang X,Wicker T,Bharti AK,Chapman J,Feltus FA,Gowik U,Grigoriev IV,Lyons E,Maher CA,Martis M,Narechania A,Otillar RP,Penning BW,Salamov AA,Wang Y,Zhang L,Carpita NC,Freeling M,Gingle AR,Hash CT,Keller B,Klein P,Kresovich S,McCann MC,Ming R,Peterson DG,Mehboob-ur-Rahman,Ware D,Westhoff P,Mayer KF,Messing J,Rokhsar DS

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LOC8055128 cDNA ORF clone, Sorghum bicolor(sorghum)

Gene

Clones

gRNAs

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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