Gene Symbol | DDX58 |
Entrez Gene ID | 396723 |
Full Name | DExD/H-box helicase 58 |
Synonyms | RHIV-1,RIG-1,RIG-I,RLR-1 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
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ORF » Species Summary » Sus scrofa » DDX58 cDNA ORF clone
Gene Symbol | DDX58 |
Entrez Gene ID | 396723 |
Full Name | DExD/H-box helicase 58 |
Synonyms | RHIV-1,RIG-1,RIG-I,RLR-1 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_021064056.1 | XP_020919715.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
XM_021064055.1 | XP_020919714.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
XM_021064058.1 | XP_020919717.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
XM_021064057.1 | XP_020919716.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
XM_021064054.1 | XP_020919713.1 | probable ATP-dependent RNA helicase DDX58 isoform X1 |
NM_213804.2 | NP_998969.2 | probable ATP-dependent RNA helicase DDX58 |
Nucleocapsid protein of porcine reproductive and respiratory syndrome virus antagonizes the antiviral activity of TRIM25 by interfering with TRIM25-mediated RIG-I ubiquitination.
Zhao K, Li LW, Jiang YF, Gao F, Zhang YJ, Zhao WY, Li GX, Yu LX, Zhou YJ, Tong GZ
Veterinary microbiology233140-146(2019 Jun)
RIG-I is responsible for activation of type I interferon pathway in Seneca Valley virus-infected porcine cells to suppress viral replication.
Li P, Zhang X, Cao W, Yang F, Du X, Shi Z, Zhang M, Liu X, Zhu Z, Zheng H
Virology journal15(1)162(2018 10)
Porcine circovirus 2 infection induces IFNβ expression through increased expression of genes involved in RIG-I and IRF7 signaling pathways.
Dvorak CMT, Puvanendiran S, Murtaugh MP
Virus research25338-47(2018 07)
Identification of the RNA Pseudoknot within the 3' End of the Porcine Reproductive and Respiratory Syndrome Virus Genome as a Pathogen-Associated Molecular Pattern To Activate Antiviral Signaling via RIG-I and Toll-Like Receptor 3.
Xie S, Chen XX, Qiao S, Li R, Sun Y, Xia S, Wang LJ, Luo X, Deng R, Zhou EM, Zhang GP
Journal of virology92(12)(2018 06)
Interactions between the influenza A virus RNA polymerase components and retinoic acid-inducible gene I.
Li W, Chen H, Sutton T, Obadan A, Perez DR
Journal of virology88(18)10432-47(2014 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following DDX58 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DDX58 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe00492 | |
Clone ID Related Accession (Same CDS sequence) | NM_213804.2 | |
Accession Version | NM_213804.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2832bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1577376000000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB426546.1. On Nov 5, 2011 this sequence version replaced NM_213804.1. ##Evidence-Data-START## Transcript exon combination :: AB426546.1, EU126659.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3179999, SAMEA3180005 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_998969.2 |
CDS | 1..2832 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe231726 | |
Clone ID Related Accession (Same CDS sequence) | XM_021064054.1 | |
Accession Version | XM_021064054.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2829bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020919713.1 |
CDS | 82..2910 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe231727 | |
Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
Accession Version | XM_021064056.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020919715.1 |
CDS | 82..2595 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe231727 | |
Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
Accession Version | XM_021064055.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020919714.1 |
CDS | 82..2595 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe231727 | |
Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
Accession Version | XM_021064058.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020919717.1 |
CDS | 92..2605 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe231727 | |
Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
Accession Version | XM_021064057.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020919716.1 |
CDS | 82..2595 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Nucleocapsid protein of porcine reproductive and respiratory syndrome virus antagonizes the antiviral activity of TRIM25 by interfering with TRIM25-mediated RIG-I ubiquitination. |
RIG-I is responsible for activation of type I interferon pathway in Seneca Valley virus-infected porcine cells to suppress viral replication. |
Porcine circovirus 2 infection induces IFNβ expression through increased expression of genes involved in RIG-I and IRF7 signaling pathways. |
Identification of the RNA Pseudoknot within the 3' End of the Porcine Reproductive and Respiratory Syndrome Virus Genome as a Pathogen-Associated Molecular Pattern To Activate Antiviral Signaling via RIG-I and Toll-Like Receptor 3. |
Interactions between the influenza A virus RNA polymerase components and retinoic acid-inducible gene I. |