ORF » Species Summary » Populus trichocarpa » LOC7496889 cDNA ORF clone

LOC7496889 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7496889 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7496889 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa06684 XM_002301899.3
Latest version!		 Populus trichocarpa probable alpha-amylase 2 (LOC7496889), mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00
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OPa06684 XM_002301899.2 Populus trichocarpa hypothetical protein (POPTR_0002s01570g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00
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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC7496889 ( XM_002301899.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002301935.2 Populus trichocarpa hypothetical protein (POPTR_0002s01570g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa06684
    Clone ID Related Accession (Same CDS sequence) XM_002301899.2 , XM_002301899.3
    Accession Version XM_002301899.2 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1233bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008468). On Dec 16, 2013 this sequence version replaced XM_002301899.1. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGTTTACA ACAGTAATGG AAACGACCAG CAGACTGATA ATGGAGCTGT GCTGCGGAGC 
    GGAAGAGAAA TCCTTCTTCA GGCTTTTAAC TGGGAGTCAC ATAAGCATGA CTGGTGGAGA 
    AAATTGGAGA AGAAAGTTGC TGATATTGCG AAATCTGGGT TTACCACAGC ATGGTTGCCG 
    CCGCCTACTA ACTCCTTCGC ACCCGAAGGT TATCTTCCAC AGAACCTTTA TAACCTCAAC 
    TCTTCATATG GTTCCGAGCA ACTCTTAAAG GCTTTACTTG AAAAGATGAA GCAGTACAAT 
    GTTAGAGCAA TGGCTGACAT TGTTATCAAT CACCGGGTTG GAACAACGCA AGGGCACGGT 
    GGAATGTACA ATCGTTATGA TGGAGTTCCA TTATCGTGGG ATGAACGTGC TGTTACATCT 
    TGTACTGGTG GATTGGGTAA TCGAAGCACT GGTGACAACT TCAATGGGGT TCCAAATATT 
    GACCATACTC AACATTTTGT TCGAAAAGAC ATAACTGCAT GGCTGCAGTG GTTACGTAAG 
    AATGTTGGCT TTCAGGATTT CCGTTTTGAT TTTGCAAGAG GTTATTCTCC AAAATATGTG 
    AAAGAATACA TTGAAGGAGC GAAGCCCATA TTTTCAGTTG GAGAGTACTG GGATTCTTGC 
    AATTACAATG GCCATTTTTT GGAATACAAC CAAGACAGCC ATAGGCAGCG GATAGTCAAT 
    TGGATTGATT TAACAGGCCA GCTCTCAGCT GCATTTGACT TCACAACAAA GGGAATTCTT 
    CAGGAAGCTG TAAAGGGGCA ATTCTGGCGT CTGCGTGACC CGCAAGGAAA GCCACCAGGT 
    GTATTGGGAT GGTGGCCCTC GAGGGCTGTC ACATTCATTG ATAACCATGA CACAGGCTCA 
    ACACAGGCTC ATTGGCCTTT CCCTTCGGAT CATATTATGG AGGGTTATGC TTACTTGCTT 
    ACACATCCAG GGATGCCGAC AGTTTTCTAC GATCACTTCT ATGACTGGGG TAATTCTATT 
    CATGAGCAGA TTGTGAAATT GATTGACATT CGGAAGCATC AAGATATCCA CAGCCGATCA 
    TCTATCAGGA TTTTTGAGGC CCAGCCAAAC CTTTATTCTG CAATTATTGG TGAGAAGGTG 
    TGCATGAAGA TTGGGGATGG TTCCTGGTGC CCAGCGGGTA AGGAGTGGAC GCTTGCAACC 
    TCTGGCCACC GATATGCCGT GTGGCAAAAA TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002301935.2
    CDS94..1326
    Translation

    Target ORF information:

    RefSeq Version XM_002301899.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0002s01570g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002301899.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGTTTACA ACAGTAATGG AAACGACCAG CAGACTGATA ATGGAGCTGT GCTGCGGAGC 
    GGAAGAGAAA TCCTTCTTCA GGCTTTTAAC TGGGAGTCAC ATAAGCATGA CTGGTGGAGA 
    AAATTGGAGA AGAAAGTTGC TGATATTGCG AAATCTGGGT TTACCACAGC ATGGTTGCCG 
    CCGCCTACTA ACTCCTTCGC ACCCGAAGGT TATCTTCCAC AGAACCTTTA TAACCTCAAC 
    TCTTCATATG GTTCCGAGCA ACTCTTAAAG GCTTTACTTG AAAAGATGAA GCAGTACAAT 
    GTTAGAGCAA TGGCTGACAT TGTTATCAAT CACCGGGTTG GAACAACGCA AGGGCACGGT 
    GGAATGTACA ATCGTTATGA TGGAGTTCCA TTATCGTGGG ATGAACGTGC TGTTACATCT 
    TGTACTGGTG GATTGGGTAA TCGAAGCACT GGTGACAACT TCAATGGGGT TCCAAATATT 
    GACCATACTC AACATTTTGT TCGAAAAGAC ATAACTGCAT GGCTGCAGTG GTTACGTAAG 
    AATGTTGGCT TTCAGGATTT CCGTTTTGAT TTTGCAAGAG GTTATTCTCC AAAATATGTG 
    AAAGAATACA TTGAAGGAGC GAAGCCCATA TTTTCAGTTG GAGAGTACTG GGATTCTTGC 
    AATTACAATG GCCATTTTTT GGAATACAAC CAAGACAGCC ATAGGCAGCG GATAGTCAAT 
    TGGATTGATT TAACAGGCCA GCTCTCAGCT GCATTTGACT TCACAACAAA GGGAATTCTT 
    CAGGAAGCTG TAAAGGGGCA ATTCTGGCGT CTGCGTGACC CGCAAGGAAA GCCACCAGGT 
    GTATTGGGAT GGTGGCCCTC GAGGGCTGTC ACATTCATTG ATAACCATGA CACAGGCTCA 
    ACACAGGCTC ATTGGCCTTT CCCTTCGGAT CATATTATGG AGGGTTATGC TTACTTGCTT 
    ACACATCCAG GGATGCCGAC AGTTTTCTAC GATCACTTCT ATGACTGGGG TAATTCTATT 
    CATGAGCAGA TTGTGAAATT GATTGACATT CGGAAGCATC AAGATATCCA CAGCCGATCA 
    TCTATCAGGA TTTTTGAGGC CCAGCCAAAC CTTTATTCTG CAATTATTGG TGAGAAGGTG 
    TGCATGAAGA TTGGGGATGG TTCCTGGTGC CCAGCGGGTA AGGAGTGGAC GCTTGCAACC 
    TCTGGCCACC GATATGCCGT GTGGCAAAAA TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7496889 ( XM_002301899.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002301935.2 Populus trichocarpa probable alpha-amylase 2 (LOC7496889), mRNA.
    Price & Availability↑
    CloneID OPa06684
    Clone ID Related Accession (Same CDS sequence) XM_002301899.2 , XM_002301899.3
    Accession Version XM_002301899.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1233bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product probable alpha-amylase 2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002301899.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGTTTACA ACAGTAATGG AAACGACCAG CAGACTGATA ATGGAGCTGT GCTGCGGAGC 
    GGAAGAGAAA TCCTTCTTCA GGCTTTTAAC TGGGAGTCAC ATAAGCATGA CTGGTGGAGA 
    AAATTGGAGA AGAAAGTTGC TGATATTGCG AAATCTGGGT TTACCACAGC ATGGTTGCCG 
    CCGCCTACTA ACTCCTTCGC ACCCGAAGGT TATCTTCCAC AGAACCTTTA TAACCTCAAC 
    TCTTCATATG GTTCCGAGCA ACTCTTAAAG GCTTTACTTG AAAAGATGAA GCAGTACAAT 
    GTTAGAGCAA TGGCTGACAT TGTTATCAAT CACCGGGTTG GAACAACGCA AGGGCACGGT 
    GGAATGTACA ATCGTTATGA TGGAGTTCCA TTATCGTGGG ATGAACGTGC TGTTACATCT 
    TGTACTGGTG GATTGGGTAA TCGAAGCACT GGTGACAACT TCAATGGGGT TCCAAATATT 
    GACCATACTC AACATTTTGT TCGAAAAGAC ATAACTGCAT GGCTGCAGTG GTTACGTAAG 
    AATGTTGGCT TTCAGGATTT CCGTTTTGAT TTTGCAAGAG GTTATTCTCC AAAATATGTG 
    AAAGAATACA TTGAAGGAGC GAAGCCCATA TTTTCAGTTG GAGAGTACTG GGATTCTTGC 
    AATTACAATG GCCATTTTTT GGAATACAAC CAAGACAGCC ATAGGCAGCG GATAGTCAAT 
    TGGATTGATT TAACAGGCCA GCTCTCAGCT GCATTTGACT TCACAACAAA GGGAATTCTT 
    CAGGAAGCTG TAAAGGGGCA ATTCTGGCGT CTGCGTGACC CGCAAGGAAA GCCACCAGGT 
    GTATTGGGAT GGTGGCCCTC GAGGGCTGTC ACATTCATTG ATAACCATGA CACAGGCTCA 
    ACACAGGCTC ATTGGCCTTT CCCTTCGGAT CATATTATGG AGGGTTATGC TTACTTGCTT 
    ACACATCCAG GGATGCCGAC AGTTTTCTAC GATCACTTCT ATGACTGGGG TAATTCTATT 
    CATGAGCAGA TTGTGAAATT GATTGACATT CGGAAGCATC AAGATATCCA CAGCCGATCA 
    TCTATCAGGA TTTTTGAGGC CCAGCCAAAC CTTTATTCTG CAATTATTGG TGAGAAGGTG 
    TGCATGAAGA TTGGGGATGG TTCCTGGTGC CCAGCGGGTA AGGAGTGGAC GCTTGCAACC 
    TCTGGCCACC GATATGCCGT GTGGCAAAAA TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002301935.2
    CDS307..1539
    Translation

    Target ORF information:

    RefSeq Version XM_002301899.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa probable alpha-amylase 2 (LOC7496889), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002301899.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGTTTACA ACAGTAATGG AAACGACCAG CAGACTGATA ATGGAGCTGT GCTGCGGAGC 
    GGAAGAGAAA TCCTTCTTCA GGCTTTTAAC TGGGAGTCAC ATAAGCATGA CTGGTGGAGA 
    AAATTGGAGA AGAAAGTTGC TGATATTGCG AAATCTGGGT TTACCACAGC ATGGTTGCCG 
    CCGCCTACTA ACTCCTTCGC ACCCGAAGGT TATCTTCCAC AGAACCTTTA TAACCTCAAC 
    TCTTCATATG GTTCCGAGCA ACTCTTAAAG GCTTTACTTG AAAAGATGAA GCAGTACAAT 
    GTTAGAGCAA TGGCTGACAT TGTTATCAAT CACCGGGTTG GAACAACGCA AGGGCACGGT 
    GGAATGTACA ATCGTTATGA TGGAGTTCCA TTATCGTGGG ATGAACGTGC TGTTACATCT 
    TGTACTGGTG GATTGGGTAA TCGAAGCACT GGTGACAACT TCAATGGGGT TCCAAATATT 
    GACCATACTC AACATTTTGT TCGAAAAGAC ATAACTGCAT GGCTGCAGTG GTTACGTAAG 
    AATGTTGGCT TTCAGGATTT CCGTTTTGAT TTTGCAAGAG GTTATTCTCC AAAATATGTG 
    AAAGAATACA TTGAAGGAGC GAAGCCCATA TTTTCAGTTG GAGAGTACTG GGATTCTTGC 
    AATTACAATG GCCATTTTTT GGAATACAAC CAAGACAGCC ATAGGCAGCG GATAGTCAAT 
    TGGATTGATT TAACAGGCCA GCTCTCAGCT GCATTTGACT TCACAACAAA GGGAATTCTT 
    CAGGAAGCTG TAAAGGGGCA ATTCTGGCGT CTGCGTGACC CGCAAGGAAA GCCACCAGGT 
    GTATTGGGAT GGTGGCCCTC GAGGGCTGTC ACATTCATTG ATAACCATGA CACAGGCTCA 
    ACACAGGCTC ATTGGCCTTT CCCTTCGGAT CATATTATGG AGGGTTATGC TTACTTGCTT 
    ACACATCCAG GGATGCCGAC AGTTTTCTAC GATCACTTCT ATGACTGGGG TAATTCTATT 
    CATGAGCAGA TTGTGAAATT GATTGACATT CGGAAGCATC AAGATATCCA CAGCCGATCA 
    TCTATCAGGA TTTTTGAGGC CCAGCCAAAC CTTTATTCTG CAATTATTGG TGAGAAGGTG 
    TGCATGAAGA TTGGGGATGG TTCCTGGTGC CCAGCGGGTA AGGAGTGGAC GCTTGCAACC 
    TCTGGCCACC GATATGCCGT GTGGCAAAAA TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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