LOC7496504 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7496504 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7496504 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa24098 XM_002315446.2
Latest version!
Populus trichocarpa hypothetical protein (POPTR_0010s00760g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa436892 XM_024609242.1
Latest version!
Populus trichocarpa WD repeat-containing protein 43 (LOC7496504), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa436893 XM_024609243.1
Latest version!
Populus trichocarpa WD repeat-containing protein 43 (LOC7496504), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    CloneID OPa24098
    Clone ID Related Accession (Same CDS sequence) XM_002315446.2
    Accession Version XM_002315446.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1854bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008476). On Dec 16, 2013 this sequence version replaced XM_002315446.1. COMPLETENESS: incomplete on the 5' end.

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGATTCTCA TAAAAGTCTG TGGTGGAGAC CTCTTGACAG CATTTAGTCC TTCATTGGAC 
    TACTTAGCAA TCAGCTCGGG AGATGGTCGA ATAAAGATCT GGGATACATT AAAGGGCCAG
    GTGCAAACTG AGTTTGCAGA CATAACATCA AGTGAAGGAG ATTTTTATGC TAAACCTGAA
    AGAGGACACC TTTCGGTTGA TTATAAATGC ATGAAGTGGT TGTCTTTGGA TAAGAAGAAG
    AAAAGGAAGC TAGGAAGTTC ATTGTTAGTG TTAGGAACGG GTAGTGGTGA TGTTTTGGCA
    CTTGATGTGT CTGCTGGTCA GTTGAAGTGG AGTGTTAGCG ATTGCCATCC TGGGGGTGTC
    AGTGCTGTTT CATTTTCTAC ACGTGATTCG TGCATTTACA CTTCAGGTGC TGATGGAATG
    ATTTGCAAAA CTGATCCACA AACAGGAAAT ACTCTGGGGA AGTTTAGAGC TTCTACAAAG
    GCGATATCCT GCATGTCTGT TTCATCTGAT GGGAAGATAT TAGCAACAGC AGCTGCACAA
    TTGAAGATTT TCAATTGCTC TGACCACAAA AAGATGCAGA AGTTCTCTGG TCATCCTGGA
    GCTGTTCGCT CCATGGTCTT TACTGATGAT GGAAAATACA TCCTCTCTTC TGCTGTTGGT
    GAAAGATATG TTGCACTGTG GAGAATAGAT GGTGGCAAAC GGCAATCAGC AAGCTGTGTT
    CTTGCAATGG AGCACCCTGC TGTATTCATT GATTGCAAGT GCTTTGAAAA TGAGGGAGTT
    GATGATGCAG GCCTGTATGT TTTGGCCATT TCAGAAACTG GTGTTTGTTA CACGTGGTGT
    GGAAAAAATG TTGAGGAATT ACGCAATTCC AAACCCACTA AAGTCTTACT ATCTTATGAA
    GAATTTCCCA AAAATCACAA GGGTGCATTA CCAACAGTAC TGGCTGCAAA ATTACAAGGC
    ACTGCCAAAC CTACAGCTGC AAATGTGTTT ATTGCTTATG GTTTGCTTGT AAAGCCTTCA
    TTTCAGAAAA TATTAATGCA TCCTGGGACA GACATTAAGC TAAATAGCTC TCAGGATGGA
    GTTCTGCTAC CACTGAGTCA GTCTCTCAGC AACACTAAGA AAGCCAGAGA CTTACAAAAT
    CGAGTTACTG CATTAGACCG TGCCAATGTG GAAGATGCCT TGCTTCCTCT CCCAAAAGTT
    TATGATCTTC ATGAGAAGAA GATGAGAAAT ATGAATATCG TTGACCATGA TGAGGTCATG
    GAAGAATCTG CTGAGAGCAA AGATGTCATG GTAGAGGTTG ATGCTGTAAC AACTAGCATG
    GAGAAGCAGT TGAGATTATT GAACATACTT GGTAGTAAAG ATGATGGTAT ATTGAGCCCC
    ACTCTTGATT CTGCAACACT TAAGGGTATT AACCTTGAAG ACAATATCCC GCTAAAGAAG
    ATGAGGGCAA CAGTTTTGTC TATGGAACCT AGCAATGCAT ACAAGTTACT GGAAGTCTTG
    GTGGCTAAGT GGCAATCTAG GTCAAATAGT GGAAAGTGTG TTTTACCATG GATATACTGT
    ATATTGGTCA ATCATGGTCA ATATATTGTG GCTCAAGAAA AACCGGAGTC CCAGATGCTT
    AATTCCTTAT TAAAGATCAC CAAATCAAGG GCTGTGGCTG TTCAACCTTT GTTGCAATTA
    GCAGGCCGTT TGCAGCTTGT AACAGCACAG ATTGACAAGG TTGCACTGAG CAAAAACCCT
    ATCTCATTGC ATAATGACCA AATGGATGAT AACGAGGATG ATGATGATGT CGACGAACAT
    CTTTATGGGG AAGAAGATGA TGAATCCCAG TTAAGTAGTG ATGATGACAG CTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002315482.1
    CDS1..1854
    Translation

    Target ORF information:

    RefSeq Version XM_002315446.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0010s00760g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_002315446.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGATTCTCA TAAAAGTCTG TGGTGGAGAC CTCTTGACAG CATTTAGTCC TTCATTGGAC 
    TACTTAGCAA TCAGCTCGGG AGATGGTCGA ATAAAGATCT GGGATACATT AAAGGGCCAG
    GTGCAAACTG AGTTTGCAGA CATAACATCA AGTGAAGGAG ATTTTTATGC TAAACCTGAA
    AGAGGACACC TTTCGGTTGA TTATAAATGC ATGAAGTGGT TGTCTTTGGA TAAGAAGAAG
    AAAAGGAAGC TAGGAAGTTC ATTGTTAGTG TTAGGAACGG GTAGTGGTGA TGTTTTGGCA
    CTTGATGTGT CTGCTGGTCA GTTGAAGTGG AGTGTTAGCG ATTGCCATCC TGGGGGTGTC
    AGTGCTGTTT CATTTTCTAC ACGTGATTCG TGCATTTACA CTTCAGGTGC TGATGGAATG
    ATTTGCAAAA CTGATCCACA AACAGGAAAT ACTCTGGGGA AGTTTAGAGC TTCTACAAAG
    GCGATATCCT GCATGTCTGT TTCATCTGAT GGGAAGATAT TAGCAACAGC AGCTGCACAA
    TTGAAGATTT TCAATTGCTC TGACCACAAA AAGATGCAGA AGTTCTCTGG TCATCCTGGA
    GCTGTTCGCT CCATGGTCTT TACTGATGAT GGAAAATACA TCCTCTCTTC TGCTGTTGGT
    GAAAGATATG TTGCACTGTG GAGAATAGAT GGTGGCAAAC GGCAATCAGC AAGCTGTGTT
    CTTGCAATGG AGCACCCTGC TGTATTCATT GATTGCAAGT GCTTTGAAAA TGAGGGAGTT
    GATGATGCAG GCCTGTATGT TTTGGCCATT TCAGAAACTG GTGTTTGTTA CACGTGGTGT
    GGAAAAAATG TTGAGGAATT ACGCAATTCC AAACCCACTA AAGTCTTACT ATCTTATGAA
    GAATTTCCCA AAAATCACAA GGGTGCATTA CCAACAGTAC TGGCTGCAAA ATTACAAGGC
    ACTGCCAAAC CTACAGCTGC AAATGTGTTT ATTGCTTATG GTTTGCTTGT AAAGCCTTCA
    TTTCAGAAAA TATTAATGCA TCCTGGGACA GACATTAAGC TAAATAGCTC TCAGGATGGA
    GTTCTGCTAC CACTGAGTCA GTCTCTCAGC AACACTAAGA AAGCCAGAGA CTTACAAAAT
    CGAGTTACTG CATTAGACCG TGCCAATGTG GAAGATGCCT TGCTTCCTCT CCCAAAAGTT
    TATGATCTTC ATGAGAAGAA GATGAGAAAT ATGAATATCG TTGACCATGA TGAGGTCATG
    GAAGAATCTG CTGAGAGCAA AGATGTCATG GTAGAGGTTG ATGCTGTAAC AACTAGCATG
    GAGAAGCAGT TGAGATTATT GAACATACTT GGTAGTAAAG ATGATGGTAT ATTGAGCCCC
    ACTCTTGATT CTGCAACACT TAAGGGTATT AACCTTGAAG ACAATATCCC GCTAAAGAAG
    ATGAGGGCAA CAGTTTTGTC TATGGAACCT AGCAATGCAT ACAAGTTACT GGAAGTCTTG
    GTGGCTAAGT GGCAATCTAG GTCAAATAGT GGAAAGTGTG TTTTACCATG GATATACTGT
    ATATTGGTCA ATCATGGTCA ATATATTGTG GCTCAAGAAA AACCGGAGTC CCAGATGCTT
    AATTCCTTAT TAAAGATCAC CAAATCAAGG GCTGTGGCTG TTCAACCTTT GTTGCAATTA
    GCAGGCCGTT TGCAGCTTGT AACAGCACAG ATTGACAAGG TTGCACTGAG CAAAAACCCT
    ATCTCATTGC ATAATGACCA AATGGATGAT AACGAGGATG ATGATGATGT CGACGAACAT
    CTTTATGGGG AAGAAGATGA TGAATCCCAG TTAAGTAGTG ATGATGACAG CTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OPa436892
    Clone ID Related Accession (Same CDS sequence) XM_024609242.1
    Accession Version XM_024609242.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1851bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product WD repeat-containing protein 43 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037294.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGTGTCCT TGAATATCAG AGACCTCTTG ACAGCATTTA GTCCTTCATT GGACTACTTA 
    GCAATCAGCT CGGGAGATGG TCGAATAAAG ATCTGGGATA CATTAAAGGG CCAGGTGCAA
    ACTGAGTTTG CAGACATAAC ATCAAGTGAA GGAGATTTTT ATGCTAAACC TGAAAGAGGA
    CACCTTTCGG TTGATTATAA ATGCATGAAG TGGTTGTCTT TGGATAAGAA GAAGAAAAGG
    AAGCTAGGAA GTTCATTGTT AGTGTTAGGA ACGGGTAGTG GTGATGTTTT GGCACTTGAT
    GTGTCTGCTG GTCAGTTGAA GTGGAGTGTT AGCGATTGCC ATCCTGGGGG TGTCAGTGCT
    GTTTCATTTT CTACACGTGA TTCGTGCATT TACACTTCAG GTGCTGATGG AATGATTTGC
    AAAACTGATC CACAAACAGG AAATACTCTG GGGAAGTTTA GAGCTTCTAC AAAGGCGATA
    TCCTGCATGT CTGTTTCATC TGATGGGAAG ATATTAGCAA CAGCAGCTGC ACAATTGAAG
    ATTTTCAATT GCTCTGACCA CAAAAAGATG CAGAAGTTCT CTGGTCATCC TGGAGCTGTT
    CGCTCCATGG TCTTTACTGA TGATGGAAAA TACATCCTCT CTTCTGCTGT TGGTGAAAGA
    TATGTTGCAC TGTGGAGAAT AGATGGTGGC AAACGGCAAT CAGCAAGCTG TGTTCTTGCA
    ATGGAGCACC CTGCTGTATT CATTGATTGC AAGTGCTTTG AAAATGAGGG AGTTGATGAT
    GCAGGCCTGT ATGTTTTGGC CATTTCAGAA ACTGGTGTTT GTTACACGTG GTGTGGAAAA
    AATGTTGAGG AATTACGCAA TTCCAAACCC ACTAAAGTCT TACTATCTTA TGAAGAATTT
    CCCAAAAATC ACAAGGGTGC ATTACCAACA GTACTGGCTG CAAAATTACA AGGCACTGCC
    AAACCTACAG CTGCAAATGT GTTTATTGCT TATGGTTTGC TTGTAAAGCC TTCATTTCAG
    AAAATATTAA TGCATCCTGG GACAGACATT AAGCTAAATA GCTCTCAGGA TGGAGTTCTG
    CTACCACTGA GTCAGTCTCT CAGCAACACT AAGAAAGCCA GAGACTTACA AAATCGAGTT
    ACTGCATTAG ACCGTGCCAA TGTGGAAGAT GCCTTGCTTC CTCTCCCAAA AGTTTATGAT
    CTTCATGAGA AGAAGATGAG AAATATGAAT ATCGTTGACC ATGATGAGGT CATGGAAGAA
    TCTGCTGAGA GCAAAGATGT CATGGTAGAG GTTGATGCTG TAACAACTAG CATGGAGAAG
    CAGTTGAGAT TATTGAACAT ACTTGGTAGT AAAGATGATG GTATATTGAG CCCCACTCTT
    GATTCTGCAA CACTTAAGGG TATTAACCTT GAAGACAATA TCCCGCTAAA GAAGATGAGG
    GCAACAGTTT TGTCTATGGA ACCTAGCAAT GCATACAAGT TACTGGAAGT CTTGGTGGCT
    AAGTGGCAAT CTAGCAGGTC AAATAGTGGA AAGTGTGTTT TACCATGGAT ATACTGTATA
    TTGGTCAATC ATGGTCAATA TATTGTGGCT CAAGAAAAAC CGGAGTCCCA GATGCTTAAT
    TCCTTATTAA AGATCACCAA ATCAAGGGCT GTGGCTGTTC AACCTTTGTT GCAATTAGCA
    GGCCGTTTGC AGCTTGTAAC AGCACAGATT GACAAGGTTG CACTGAGCAA AAACCCTATC
    TCATTGCATA ATGACCAAAT GGATGATAAC GAGGATGATG ATGATGTCGA CGAACATCTT
    TATGGGGAAG AAGATGATGA ATCCCAGTTA AGTAGTGATG ATGACAGCTA G

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024465010.1
    CDS119..1969
    Translation

    Target ORF information:

    RefSeq Version XM_024609242.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa WD repeat-containing protein 43 (LOC7496504), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_024609242.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGTGTCCT TGAATATCAG AGACCTCTTG ACAGCATTTA GTCCTTCATT GGACTACTTA 
    GCAATCAGCT CGGGAGATGG TCGAATAAAG ATCTGGGATA CATTAAAGGG CCAGGTGCAA
    ACTGAGTTTG CAGACATAAC ATCAAGTGAA GGAGATTTTT ATGCTAAACC TGAAAGAGGA
    CACCTTTCGG TTGATTATAA ATGCATGAAG TGGTTGTCTT TGGATAAGAA GAAGAAAAGG
    AAGCTAGGAA GTTCATTGTT AGTGTTAGGA ACGGGTAGTG GTGATGTTTT GGCACTTGAT
    GTGTCTGCTG GTCAGTTGAA GTGGAGTGTT AGCGATTGCC ATCCTGGGGG TGTCAGTGCT
    GTTTCATTTT CTACACGTGA TTCGTGCATT TACACTTCAG GTGCTGATGG AATGATTTGC
    AAAACTGATC CACAAACAGG AAATACTCTG GGGAAGTTTA GAGCTTCTAC AAAGGCGATA
    TCCTGCATGT CTGTTTCATC TGATGGGAAG ATATTAGCAA CAGCAGCTGC ACAATTGAAG
    ATTTTCAATT GCTCTGACCA CAAAAAGATG CAGAAGTTCT CTGGTCATCC TGGAGCTGTT
    CGCTCCATGG TCTTTACTGA TGATGGAAAA TACATCCTCT CTTCTGCTGT TGGTGAAAGA
    TATGTTGCAC TGTGGAGAAT AGATGGTGGC AAACGGCAAT CAGCAAGCTG TGTTCTTGCA
    ATGGAGCACC CTGCTGTATT CATTGATTGC AAGTGCTTTG AAAATGAGGG AGTTGATGAT
    GCAGGCCTGT ATGTTTTGGC CATTTCAGAA ACTGGTGTTT GTTACACGTG GTGTGGAAAA
    AATGTTGAGG AATTACGCAA TTCCAAACCC ACTAAAGTCT TACTATCTTA TGAAGAATTT
    CCCAAAAATC ACAAGGGTGC ATTACCAACA GTACTGGCTG CAAAATTACA AGGCACTGCC
    AAACCTACAG CTGCAAATGT GTTTATTGCT TATGGTTTGC TTGTAAAGCC TTCATTTCAG
    AAAATATTAA TGCATCCTGG GACAGACATT AAGCTAAATA GCTCTCAGGA TGGAGTTCTG
    CTACCACTGA GTCAGTCTCT CAGCAACACT AAGAAAGCCA GAGACTTACA AAATCGAGTT
    ACTGCATTAG ACCGTGCCAA TGTGGAAGAT GCCTTGCTTC CTCTCCCAAA AGTTTATGAT
    CTTCATGAGA AGAAGATGAG AAATATGAAT ATCGTTGACC ATGATGAGGT CATGGAAGAA
    TCTGCTGAGA GCAAAGATGT CATGGTAGAG GTTGATGCTG TAACAACTAG CATGGAGAAG
    CAGTTGAGAT TATTGAACAT ACTTGGTAGT AAAGATGATG GTATATTGAG CCCCACTCTT
    GATTCTGCAA CACTTAAGGG TATTAACCTT GAAGACAATA TCCCGCTAAA GAAGATGAGG
    GCAACAGTTT TGTCTATGGA ACCTAGCAAT GCATACAAGT TACTGGAAGT CTTGGTGGCT
    AAGTGGCAAT CTAGCAGGTC AAATAGTGGA AAGTGTGTTT TACCATGGAT ATACTGTATA
    TTGGTCAATC ATGGTCAATA TATTGTGGCT CAAGAAAAAC CGGAGTCCCA GATGCTTAAT
    TCCTTATTAA AGATCACCAA ATCAAGGGCT GTGGCTGTTC AACCTTTGTT GCAATTAGCA
    GGCCGTTTGC AGCTTGTAAC AGCACAGATT GACAAGGTTG CACTGAGCAA AAACCCTATC
    TCATTGCATA ATGACCAAAT GGATGATAAC GAGGATGATG ATGATGTCGA CGAACATCTT
    TATGGGGAAG AAGATGATGA ATCCCAGTTA AGTAGTGATG ATGACAGCTA G

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OPa436893
    Clone ID Related Accession (Same CDS sequence) XM_024609243.1
    Accession Version XM_024609243.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1848bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product WD repeat-containing protein 43 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037294.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGTGTCCT TGAATATCAG AGACCTCTTG ACAGCATTTA GTCCTTCATT GGACTACTTA 
    GCAATCAGCT CGGGAGATGG TCGAATAAAG ATCTGGGATA CATTAAAGGG CCAGGTGCAA
    ACTGAGTTTG CAGACATAAC ATCAAGTGAA GGAGATTTTT ATGCTAAACC TGAAAGAGGA
    CACCTTTCGG TTGATTATAA ATGCATGAAG TGGTTGTCTT TGGATAAGAA GAAGAAAAGG
    AAGCTAGGAA GTTCATTGTT AGTGTTAGGA ACGGGTAGTG GTGATGTTTT GGCACTTGAT
    GTGTCTGCTG GTCAGTTGAA GTGGAGTGTT AGCGATTGCC ATCCTGGGGG TGTCAGTGCT
    GTTTCATTTT CTACACGTGA TTCGTGCATT TACACTTCAG GTGCTGATGG AATGATTTGC
    AAAACTGATC CACAAACAGG AAATACTCTG GGGAAGTTTA GAGCTTCTAC AAAGGCGATA
    TCCTGCATGT CTGTTTCATC TGATGGGAAG ATATTAGCAA CAGCAGCTGC ACAATTGAAG
    ATTTTCAATT GCTCTGACCA CAAAAAGATG CAGAAGTTCT CTGGTCATCC TGGAGCTGTT
    CGCTCCATGG TCTTTACTGA TGATGGAAAA TACATCCTCT CTTCTGCTGT TGGTGAAAGA
    TATGTTGCAC TGTGGAGAAT AGATGGTGGC AAACGGCAAT CAGCAAGCTG TGTTCTTGCA
    ATGGAGCACC CTGCTGTATT CATTGATTGC AAGTGCTTTG AAAATGAGGG AGTTGATGAT
    GCAGGCCTGT ATGTTTTGGC CATTTCAGAA ACTGGTGTTT GTTACACGTG GTGTGGAAAA
    AATGTTGAGG AATTACGCAA TTCCAAACCC ACTAAAGTCT TACTATCTTA TGAAGAATTT
    CCCAAAAATC ACAAGGGTGC ATTACCAACA GTACTGGCTG CAAAATTACA AGGCACTGCC
    AAACCTACAG CTGCAAATGT GTTTATTGCT TATGGTTTGC TTGTAAAGCC TTCATTTCAG
    AAAATATTAA TGCATCCTGG GACAGACATT AAGCTAAATA GCTCTCAGGA TGGAGTTCTG
    CTACCACTGA GTCAGTCTCT CAGCAACACT AAGAAAGCCA GAGACTTACA AAATCGAGTT
    ACTGCATTAG ACCGTGCCAA TGTGGAAGAT GCCTTGCTTC CTCTCCCAAA AGTTTATGAT
    CTTCATGAGA AGAAGATGAG AAATATGAAT ATCGTTGACC ATGATGAGGT CATGGAAGAA
    TCTGCTGAGA GCAAAGATGT CATGGTAGAG GTTGATGCTG TAACAACTAG CATGGAGAAG
    CAGTTGAGAT TATTGAACAT ACTTGGTAGT AAAGATGATG GTATATTGAG CCCCACTCTT
    GATTCTGCAA CACTTAAGGG TATTAACCTT GAAGACAATA TCCCGCTAAA GAAGATGAGG
    GCAACAGTTT TGTCTATGGA ACCTAGCAAT GCATACAAGT TACTGGAAGT CTTGGTGGCT
    AAGTGGCAAT CTAGGTCAAA TAGTGGAAAG TGTGTTTTAC CATGGATATA CTGTATATTG
    GTCAATCATG GTCAATATAT TGTGGCTCAA GAAAAACCGG AGTCCCAGAT GCTTAATTCC
    TTATTAAAGA TCACCAAATC AAGGGCTGTG GCTGTTCAAC CTTTGTTGCA ATTAGCAGGC
    CGTTTGCAGC TTGTAACAGC ACAGATTGAC AAGGTTGCAC TGAGCAAAAA CCCTATCTCA
    TTGCATAATG ACCAAATGGA TGATAACGAG GATGATGATG ATGTCGACGA ACATCTTTAT
    GGGGAAGAAG ATGATGAATC CCAGTTAAGT AGTGATGATG ACAGCTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024465011.1
    CDS119..1966
    Translation

    Target ORF information:

    RefSeq Version XM_024609243.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa WD repeat-containing protein 43 (LOC7496504), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_024609243.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGTGTCCT TGAATATCAG AGACCTCTTG ACAGCATTTA GTCCTTCATT GGACTACTTA 
    GCAATCAGCT CGGGAGATGG TCGAATAAAG ATCTGGGATA CATTAAAGGG CCAGGTGCAA
    ACTGAGTTTG CAGACATAAC ATCAAGTGAA GGAGATTTTT ATGCTAAACC TGAAAGAGGA
    CACCTTTCGG TTGATTATAA ATGCATGAAG TGGTTGTCTT TGGATAAGAA GAAGAAAAGG
    AAGCTAGGAA GTTCATTGTT AGTGTTAGGA ACGGGTAGTG GTGATGTTTT GGCACTTGAT
    GTGTCTGCTG GTCAGTTGAA GTGGAGTGTT AGCGATTGCC ATCCTGGGGG TGTCAGTGCT
    GTTTCATTTT CTACACGTGA TTCGTGCATT TACACTTCAG GTGCTGATGG AATGATTTGC
    AAAACTGATC CACAAACAGG AAATACTCTG GGGAAGTTTA GAGCTTCTAC AAAGGCGATA
    TCCTGCATGT CTGTTTCATC TGATGGGAAG ATATTAGCAA CAGCAGCTGC ACAATTGAAG
    ATTTTCAATT GCTCTGACCA CAAAAAGATG CAGAAGTTCT CTGGTCATCC TGGAGCTGTT
    CGCTCCATGG TCTTTACTGA TGATGGAAAA TACATCCTCT CTTCTGCTGT TGGTGAAAGA
    TATGTTGCAC TGTGGAGAAT AGATGGTGGC AAACGGCAAT CAGCAAGCTG TGTTCTTGCA
    ATGGAGCACC CTGCTGTATT CATTGATTGC AAGTGCTTTG AAAATGAGGG AGTTGATGAT
    GCAGGCCTGT ATGTTTTGGC CATTTCAGAA ACTGGTGTTT GTTACACGTG GTGTGGAAAA
    AATGTTGAGG AATTACGCAA TTCCAAACCC ACTAAAGTCT TACTATCTTA TGAAGAATTT
    CCCAAAAATC ACAAGGGTGC ATTACCAACA GTACTGGCTG CAAAATTACA AGGCACTGCC
    AAACCTACAG CTGCAAATGT GTTTATTGCT TATGGTTTGC TTGTAAAGCC TTCATTTCAG
    AAAATATTAA TGCATCCTGG GACAGACATT AAGCTAAATA GCTCTCAGGA TGGAGTTCTG
    CTACCACTGA GTCAGTCTCT CAGCAACACT AAGAAAGCCA GAGACTTACA AAATCGAGTT
    ACTGCATTAG ACCGTGCCAA TGTGGAAGAT GCCTTGCTTC CTCTCCCAAA AGTTTATGAT
    CTTCATGAGA AGAAGATGAG AAATATGAAT ATCGTTGACC ATGATGAGGT CATGGAAGAA
    TCTGCTGAGA GCAAAGATGT CATGGTAGAG GTTGATGCTG TAACAACTAG CATGGAGAAG
    CAGTTGAGAT TATTGAACAT ACTTGGTAGT AAAGATGATG GTATATTGAG CCCCACTCTT
    GATTCTGCAA CACTTAAGGG TATTAACCTT GAAGACAATA TCCCGCTAAA GAAGATGAGG
    GCAACAGTTT TGTCTATGGA ACCTAGCAAT GCATACAAGT TACTGGAAGT CTTGGTGGCT
    AAGTGGCAAT CTAGGTCAAA TAGTGGAAAG TGTGTTTTAC CATGGATATA CTGTATATTG
    GTCAATCATG GTCAATATAT TGTGGCTCAA GAAAAACCGG AGTCCCAGAT GCTTAATTCC
    TTATTAAAGA TCACCAAATC AAGGGCTGTG GCTGTTCAAC CTTTGTTGCA ATTAGCAGGC
    CGTTTGCAGC TTGTAACAGC ACAGATTGAC AAGGTTGCAC TGAGCAAAAA CCCTATCTCA
    TTGCATAATG ACCAAATGGA TGATAACGAG GATGATGATG ATGTCGACGA ACATCTTTAT
    GGGGAAGAAG ATGATGAATC CCAGTTAAGT AGTGATGATG ACAGCTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D