ORF » Species Summary » Populus trichocarpa » LOC7486772 cDNA ORF clone

LOC7486772 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7486772 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7486772 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa29765 XM_002320831.3
Latest version!		 Populus trichocarpa E3 ubiquitin-protein ligase SINAT3 (LOC7486772), mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $139.30
$199.00
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OPa29765 XM_002320831.2 Populus trichocarpa hypothetical protein (POPTR_0014s09470g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 9-11 $139.30
$199.00
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC7486772 ( XM_002320831.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002320867.1 Populus trichocarpa hypothetical protein (POPTR_0014s09470g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa29765
    Clone ID Related Accession (Same CDS sequence) XM_002320831.2 , XM_002320831.3
    Accession Version XM_002320831.2 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 993bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008480). On Dec 16, 2013 this sequence version replaced XM_002320831.1. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAATTGG ATAGCATTGA ATGTGTGCCA TCCTCAGATT TAACAGATGA GGATGAGATC 
    CACCACCACC ACCATCTCCA TCATTTCCCT TCTGTTTCAA AGCCACACAC CACCACCACC 
    ACCACCAATA ATAATAACAA TAACAATACT AATACTGTGG CTTCTTCTTT TCACTCCACT 
    AGTGTTCATG AGCTCCTTGA ATGCCCTGTT TGTACCAATT CTATGTACCC TCCTATTCAT 
    CAGTGCCACA ATGGCCATAC ACTCTGTTCA ACCTGTAAAA CACGAGTACA CAATCGGTGT 
    CCCACTTGTA GACAGGAGCT TGGTGACATT AGATGTCTAG CTTTGGAAAA AGTAGCTGAA 
    TCACTCGAGC TACCTTGCAA ATACATGTCA CTTGGATGCC CAGAGATTTT TCCATACTAC 
    AGTAAACTAA AACATGAGAA CTTGTGCAAT TTTAGGCCAT ACAACTGTCC ATATGCTGGA 
    TCAGAGTGTG TTATTGTTGG GGATATCCCA TTCCTTGTTA CTCATCTGAG GGATGATCAC 
    AAAGTGGACA TGCATTCTGG GTGTACTTTC AACCATCGCT ATGTCAAGTC TAATCCTCGT 
    GAAGTAGAAA ATGCAACATG GATGTTAACA GTTTTCCACT GTTTTGGCCA GTATTTCTGC 
    CTTCATTTTG AAGCTTTCCA GCTTGGGATG GCTCCTGTTT ATATGGCATT CCTCAGATTC 
    ATGGGTGATG AGACAGAAGC TCGGAATTAC AGCTACAGCC TGGAGGTTGG GGGAAATGGT 
    CGGAAACTTA TTTGGGAAGG CATGCCACGG AGTATAAGAG ATAGCCACAG GAAGGTTAGG 
    GACAGCCATG ATGGACTTGT TATACAACGT AACATGGCAC TTTTCTTCTC TGGAGGAGAT 
    AGGAAGGAGT TAAAGCTGCG AGTTACAGGA CGGATATGGA AAGAACAGCA GAACCCAGAA 
    GGTGGGGCAT GCATTCCCAA CCTTTGTAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002320867.1
    CDS334..1326
    Translation

    Target ORF information:

    RefSeq Version XM_002320831.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0014s09470g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002320831.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAATTGG ATAGCATTGA ATGTGTGCCA TCCTCAGATT TAACAGATGA GGATGAGATC 
    CACCACCACC ACCATCTCCA TCATTTCCCT TCTGTTTCAA AGCCACACAC CACCACCACC 
    ACCACCAATA ATAATAACAA TAACAATACT AATACTGTGG CTTCTTCTTT TCACTCCACT 
    AGTGTTCATG AGCTCCTTGA ATGCCCTGTT TGTACCAATT CTATGTACCC TCCTATTCAT 
    CAGTGCCACA ATGGCCATAC ACTCTGTTCA ACCTGTAAAA CACGAGTACA CAATCGGTGT 
    CCCACTTGTA GACAGGAGCT TGGTGACATT AGATGTCTAG CTTTGGAAAA AGTAGCTGAA 
    TCACTCGAGC TACCTTGCAA ATACATGTCA CTTGGATGCC CAGAGATTTT TCCATACTAC 
    AGTAAACTAA AACATGAGAA CTTGTGCAAT TTTAGGCCAT ACAACTGTCC ATATGCTGGA 
    TCAGAGTGTG TTATTGTTGG GGATATCCCA TTCCTTGTTA CTCATCTGAG GGATGATCAC 
    AAAGTGGACA TGCATTCTGG GTGTACTTTC AACCATCGCT ATGTCAAGTC TAATCCTCGT 
    GAAGTAGAAA ATGCAACATG GATGTTAACA GTTTTCCACT GTTTTGGCCA GTATTTCTGC 
    CTTCATTTTG AAGCTTTCCA GCTTGGGATG GCTCCTGTTT ATATGGCATT CCTCAGATTC 
    ATGGGTGATG AGACAGAAGC TCGGAATTAC AGCTACAGCC TGGAGGTTGG GGGAAATGGT 
    CGGAAACTTA TTTGGGAAGG CATGCCACGG AGTATAAGAG ATAGCCACAG GAAGGTTAGG 
    GACAGCCATG ATGGACTTGT TATACAACGT AACATGGCAC TTTTCTTCTC TGGAGGAGAT 
    AGGAAGGAGT TAAAGCTGCG AGTTACAGGA CGGATATGGA AAGAACAGCA GAACCCAGAA 
    GGTGGGGCAT GCATTCCCAA CCTTTGTAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7486772 ( XM_002320831.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002320867.1 Populus trichocarpa E3 ubiquitin-protein ligase SINAT3 (LOC7486772), mRNA.
    Price & Availability↑
    CloneID OPa29765
    Clone ID Related Accession (Same CDS sequence) XM_002320831.2 , XM_002320831.3
    Accession Version XM_002320831.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 993bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product E3 ubiquitin-protein ligase SINAT3
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037298.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002320831.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAATTGG ATAGCATTGA ATGTGTGCCA TCCTCAGATT TAACAGATGA GGATGAGATC 
    CACCACCACC ACCATCTCCA TCATTTCCCT TCTGTTTCAA AGCCACACAC CACCACCACC 
    ACCACCAATA ATAATAACAA TAACAATACT AATACTGTGG CTTCTTCTTT TCACTCCACT 
    AGTGTTCATG AGCTCCTTGA ATGCCCTGTT TGTACCAATT CTATGTACCC TCCTATTCAT 
    CAGTGCCACA ATGGCCATAC ACTCTGTTCA ACCTGTAAAA CACGAGTACA CAATCGGTGT 
    CCCACTTGTA GACAGGAGCT TGGTGACATT AGATGTCTAG CTTTGGAAAA AGTAGCTGAA 
    TCACTCGAGC TACCTTGCAA ATACATGTCA CTTGGATGCC CAGAGATTTT TCCATACTAC 
    AGTAAACTAA AACATGAGAA CTTGTGCAAT TTTAGGCCAT ACAACTGTCC ATATGCTGGA 
    TCAGAGTGTG TTATTGTTGG GGATATCCCA TTCCTTGTTA CTCATCTGAG GGATGATCAC 
    AAAGTGGACA TGCATTCTGG GTGTACTTTC AACCATCGCT ATGTCAAGTC TAATCCTCGT 
    GAAGTAGAAA ATGCAACATG GATGTTAACA GTTTTCCACT GTTTTGGCCA GTATTTCTGC 
    CTTCATTTTG AAGCTTTCCA GCTTGGGATG GCTCCTGTTT ATATGGCATT CCTCAGATTC 
    ATGGGTGATG AGACAGAAGC TCGGAATTAC AGCTACAGCC TGGAGGTTGG GGGAAATGGT 
    CGGAAACTTA TTTGGGAAGG CATGCCACGG AGTATAAGAG ATAGCCACAG GAAGGTTAGG 
    GACAGCCATG ATGGACTTGT TATACAACGT AACATGGCAC TTTTCTTCTC TGGAGGAGAT 
    AGGAAGGAGT TAAAGCTGCG AGTTACAGGA CGGATATGGA AAGAACAGCA GAACCCAGAA 
    GGTGGGGCAT GCATTCCCAA CCTTTGTAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002320867.1
    CDS392..1384
    Translation

    Target ORF information:

    RefSeq Version XM_002320831.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa E3 ubiquitin-protein ligase SINAT3 (LOC7486772), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002320831.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAATTGG ATAGCATTGA ATGTGTGCCA TCCTCAGATT TAACAGATGA GGATGAGATC 
    CACCACCACC ACCATCTCCA TCATTTCCCT TCTGTTTCAA AGCCACACAC CACCACCACC 
    ACCACCAATA ATAATAACAA TAACAATACT AATACTGTGG CTTCTTCTTT TCACTCCACT 
    AGTGTTCATG AGCTCCTTGA ATGCCCTGTT TGTACCAATT CTATGTACCC TCCTATTCAT 
    CAGTGCCACA ATGGCCATAC ACTCTGTTCA ACCTGTAAAA CACGAGTACA CAATCGGTGT 
    CCCACTTGTA GACAGGAGCT TGGTGACATT AGATGTCTAG CTTTGGAAAA AGTAGCTGAA 
    TCACTCGAGC TACCTTGCAA ATACATGTCA CTTGGATGCC CAGAGATTTT TCCATACTAC 
    AGTAAACTAA AACATGAGAA CTTGTGCAAT TTTAGGCCAT ACAACTGTCC ATATGCTGGA 
    TCAGAGTGTG TTATTGTTGG GGATATCCCA TTCCTTGTTA CTCATCTGAG GGATGATCAC 
    AAAGTGGACA TGCATTCTGG GTGTACTTTC AACCATCGCT ATGTCAAGTC TAATCCTCGT 
    GAAGTAGAAA ATGCAACATG GATGTTAACA GTTTTCCACT GTTTTGGCCA GTATTTCTGC 
    CTTCATTTTG AAGCTTTCCA GCTTGGGATG GCTCCTGTTT ATATGGCATT CCTCAGATTC 
    ATGGGTGATG AGACAGAAGC TCGGAATTAC AGCTACAGCC TGGAGGTTGG GGGAAATGGT 
    CGGAAACTTA TTTGGGAAGG CATGCCACGG AGTATAAGAG ATAGCCACAG GAAGGTTAGG 
    GACAGCCATG ATGGACTTGT TATACAACGT AACATGGCAC TTTTCTTCTC TGGAGGAGAT 
    AGGAAGGAGT TAAAGCTGCG AGTTACAGGA CGGATATGGA AAGAACAGCA GAACCCAGAA 
    GGTGGGGCAT GCATTCCCAA CCTTTGTAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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