| Gene Symbol | POPTR_0004s17670g |
| Entrez Gene ID | 7477872 |
| Full Name | hypothetical protein |
| Synonyms | POPTRDRAFT_195942 |
| Gene Type | protein-coding |
| Organism | Populus trichocarpa(Populus balsamifera subsp. trichocarpa) |
IVD Raw Materials
ORF » Species Summary » Populus trichocarpa » POPTR_0004s17670g cDNA ORF clone
| Gene Symbol | POPTR_0004s17670g |
| Entrez Gene ID | 7477872 |
| Full Name | hypothetical protein |
| Synonyms | POPTRDRAFT_195942 |
| Gene Type | protein-coding |
| Organism | Populus trichocarpa(Populus balsamifera subsp. trichocarpa) |
| mRNA | Protein | Name |
|---|---|---|
| XM_024598838.1 | XP_024454606.1 | zinc finger CCCH domain-containing protein 39 isoform X1 |
| XM_002305458.3 | XP_002305494.3 | zinc finger CCCH domain-containing protein 39 isoform X3 |
| XM_024598839.1 | XP_024454607.1 | zinc finger CCCH domain-containing protein 39 isoform X2 |
| XM_002305458.2 | XP_002305494.2 | hypothetical protein |
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following POPTR_0004s17670g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0004s17670g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OPa10076 | |
| Clone ID Related Accession (Same CDS sequence) | XM_002305458.2 | |
| Accession Version | XM_002305458.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 849bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1388332800000 | |
| Organism | Populus trichocarpa(Populus balsamifera subsp. trichocarpa) | |
| Product | hypothetical protein | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008470). On Dec 16, 2013 this sequence version replaced XM_002305458.1. | |
1 | ATGAGTTCTA GGGTGCCACC AACAAACAGC CTTCCAGTCC ACAAGGGAAC AACCAACATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_002305494.2 |
| CDS | 323..1171 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_002305458.2 |
1 | ATGAGTTCTA GGGTGCCACC AACAAACAGC CTTCCAGTCC ACAAGGGAAC AACCAACATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OPa427603 | |
| Clone ID Related Accession (Same CDS sequence) | XM_024598838.1 | |
| Accession Version | XM_024598838.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1523116800000 | |
| Organism | Populus trichocarpa(black cottonwood) | |
| Product | zinc finger CCCH domain-containing protein 39 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037288.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGTTACC CTGATTCCCC TGTTTCTTTT ATGGGATCAC AGGCCTCGTA TCAATCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_024454606.1 |
| CDS | 517..1557 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_024598838.1 |
1 | ATGAGTTACC CTGATTCCCC TGTTTCTTTT ATGGGATCAC AGGCCTCGTA TCAATCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OPa427604 | |
| Clone ID Related Accession (Same CDS sequence) | XM_024598839.1 | |
| Accession Version | XM_024598839.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1038bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1523116800000 | |
| Organism | Populus trichocarpa(black cottonwood) | |
| Product | zinc finger CCCH domain-containing protein 39 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037288.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGTTACC CTGATTCCCC TGTTTCTTTT ATGGGATCAC AGGCCTCGTA TCAATCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_024454607.1 |
| CDS | 518..1555 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_024598839.1 |
1 | ATGAGTTACC CTGATTCCCC TGTTTCTTTT ATGGGATCAC AGGCCTCGTA TCAATCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OPa427605 | |
| Clone ID Related Accession (Same CDS sequence) | XM_002305458.3 | |
| Accession Version | XM_002305458.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 858bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 1523116800000 | |
| Organism | Populus trichocarpa(black cottonwood) | |
| Product | zinc finger CCCH domain-containing protein 39 isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037288.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002305458.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGTTCTA GGGTGCCACC AACAAACAGC CTTCCAGTCC ACAAGGGAAC AACCAACATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_002305494.3 |
| CDS | 395..1252 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_002305458.3 |
1 | ATGAGTTCTA GGGTGCCACC AACAAACAGC CTTCCAGTCC ACAAGGGAAC AACCAACATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). |