ORF » Species Summary » Populus trichocarpa » POPTR_0002s00390g cDNA ORF clone

POPTR_0002s00390g cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following POPTR_0002s00390g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0002s00390g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa425139 XM_024595912.1
Latest version!		 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $69.30
$99.00
OPa425140 XM_024595913.1
Latest version!		 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $69.30
$99.00
OPa425141 XM_002301850.3
Latest version!		 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X3, mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $69.30
$99.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0002s00390g ( XM_024595912.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024451680.1 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa425139
    Clone ID Related Accession (Same CDS sequence) XM_024595912.1
    Accession Version XM_024595912.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 537bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product AP-1 complex subunit sigma-1 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAGTACCGA TCATCATGGA TGCAAAACTC 
    AATTTGTTAA GGACTGGACA GGTAATCCGA GAGCTGAGTG GCATCATTCT AAATCGGGGT 
    CCCAAGCTTT GCAACTTCGT GGAGTGGAGA GGATTTAGGG TTGTGTATAG AAGGTATGCT 
    GGCCTCTATT TCTGCATGTG TGTTGATGAG AAAGACAACG AACTGGAGGT TCTTGATATC 
    ATTCATCATT ATGTGGAGAT ACTGGATCGT TATTTTGGCA GTGTTTGTGA ATTGGACTTG 
    ATCTTCAATT TCCACAAGGC GTATTATATT CTGGACGAAA TCTTGATAGC CGGTGAGCTT 
    CAAGAGTCAA GCAAGAGATC AGTGATACGG CTGGTGTGCA CACATGATTC GTTGGTGGAG 
    ACGGCCAAGG AGCAGGCCAA CTCGTTAAGC AGTGTGATTG CACAAGTTAC CAAATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024451680.1
    CDS139..675
    Translation

    Target ORF information:

    RefSeq Version XM_024595912.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024595912.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAGTACCGA TCATCATGGA TGCAAAACTC 
    AATTTGTTAA GGACTGGACA GGTAATCCGA GAGCTGAGTG GCATCATTCT AAATCGGGGT 
    CCCAAGCTTT GCAACTTCGT GGAGTGGAGA GGATTTAGGG TTGTGTATAG AAGGTATGCT 
    GGCCTCTATT TCTGCATGTG TGTTGATGAG AAAGACAACG AACTGGAGGT TCTTGATATC 
    ATTCATCATT ATGTGGAGAT ACTGGATCGT TATTTTGGCA GTGTTTGTGA ATTGGACTTG 
    ATCTTCAATT TCCACAAGGC GTATTATATT CTGGACGAAA TCTTGATAGC CGGTGAGCTT 
    CAAGAGTCAA GCAAGAGATC AGTGATACGG CTGGTGTGCA CACATGATTC GTTGGTGGAG 
    ACGGCCAAGG AGCAGGCCAA CTCGTTAAGC AGTGTGATTG CACAAGTTAC CAAATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0002s00390g ( XM_024595913.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024451681.1 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa425140
    Clone ID Related Accession (Same CDS sequence) XM_024595913.1
    Accession Version XM_024595913.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 525bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product AP-1 complex subunit sigma-1 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAGTACCGA TCATCATGGA TGCAAAACTC 
    AATTTGTTAA GGACTGGACA GGTAATCCGA GAGCTGAGTG GCATCATTCT AAATCGGGGT 
    CCCAAGCTTT GCAACTTCGT GGAGTGGAGA GGATTTAGGG TTGTGTATAG AAGGTATGCT 
    GGCCTCTATT TCTGCATGTG TGTTGATGAG AAAGACAACG AACTGGAGGT TCTTGATATC 
    ATTCATCATT ATGTGGAGAT ACTGGATCGT TATTTTGGCA GTGTTTGTGA ATTGGACTTG 
    ATCTTCAATT TCCACAAGGC GTATTATATT CTGGACGAAA TCTTGATAGC CGGTGAGCTT 
    CAAGAGTCAA GCAAGAGATC AGTGATACGG CTGGATTCGT TGGTGGAGAC GGCCAAGGAG 
    CAGGCCAACT CGTTAAGCAG TGTGATTGCA CAAGTTACCA AATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024451681.1
    CDS142..666
    Translation

    Target ORF information:

    RefSeq Version XM_024595913.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024595913.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAGTACCGA TCATCATGGA TGCAAAACTC 
    AATTTGTTAA GGACTGGACA GGTAATCCGA GAGCTGAGTG GCATCATTCT AAATCGGGGT 
    CCCAAGCTTT GCAACTTCGT GGAGTGGAGA GGATTTAGGG TTGTGTATAG AAGGTATGCT 
    GGCCTCTATT TCTGCATGTG TGTTGATGAG AAAGACAACG AACTGGAGGT TCTTGATATC 
    ATTCATCATT ATGTGGAGAT ACTGGATCGT TATTTTGGCA GTGTTTGTGA ATTGGACTTG 
    ATCTTCAATT TCCACAAGGC GTATTATATT CTGGACGAAA TCTTGATAGC CGGTGAGCTT 
    CAAGAGTCAA GCAAGAGATC AGTGATACGG CTGGATTCGT TGGTGGAGAC GGCCAAGGAG 
    CAGGCCAACT CGTTAAGCAG TGTGATTGCA CAAGTTACCA AATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0002s00390g ( XM_002301850.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002301886.3 Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X3, mRNA.
    Price & Availability↑
    CloneID OPa425141
    Clone ID Related Accession (Same CDS sequence) XM_002301850.3
    Accession Version XM_002301850.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 486bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product AP-1 complex subunit sigma-1 isoform X3
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002301850.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAATCCGAG AGCTGAGTGG CATCATTCTA 
    AATCGGGGTC CCAAGCTTTG CAACTTCGTG GAGTGGAGAG GATTTAGGGT TGTGTATAGA 
    AGGTATGCTG GCCTCTATTT CTGCATGTGT GTTGATGAGA AAGACAACGA ACTGGAGGTT 
    CTTGATATCA TTCATCATTA TGTGGAGATA CTGGATCGTT ATTTTGGCAG TGTTTGTGAA 
    TTGGACTTGA TCTTCAATTT CCACAAGGCG TATTATATTC TGGACGAAAT CTTGATAGCC 
    GGTGAGCTTC AAGAGTCAAG CAAGAGATCA GTGATACGGC TGGTGTGCAC ACATGATTCG 
    TTGGTGGAGA CGGCCAAGGA GCAGGCCAAC TCGTTAAGCA GTGTGATTGC ACAAGTTACC 
    AAATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002301886.3
    CDS137..622
    Translation

    Target ORF information:

    RefSeq Version XM_002301850.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa AP-1 complex subunit sigma-1 (LOC7471734), transcript variant X3, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002301850.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTCACT TCGTGCTTCT TGTCAGTCGC CAGGGAAAGG TGAGGTTGGC CAAATGGTAT 
    TCCCCTTATA CTCTGAGTGA AAGATCTAAG GTAATCCGAG AGCTGAGTGG CATCATTCTA 
    AATCGGGGTC CCAAGCTTTG CAACTTCGTG GAGTGGAGAG GATTTAGGGT TGTGTATAGA 
    AGGTATGCTG GCCTCTATTT CTGCATGTGT GTTGATGAGA AAGACAACGA ACTGGAGGTT 
    CTTGATATCA TTCATCATTA TGTGGAGATA CTGGATCGTT ATTTTGGCAG TGTTTGTGAA 
    TTGGACTTGA TCTTCAATTT CCACAAGGCG TATTATATTC TGGACGAAAT CTTGATAGCC 
    GGTGAGCTTC AAGAGTCAAG CAAGAGATCA GTGATACGGC TGGTGTGCAC ACATGATTCG 
    TTGGTGGAGA CGGCCAAGGA GCAGGCCAAC TCGTTAAGCA GTGTGATTGC ACAAGTTACC 
    AAATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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