ORF » Species Summary » Populus trichocarpa » POPTR_0005s06500g cDNA ORF clone

POPTR_0005s06500g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0005s06500g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0005s06500g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa11827 XM_002306997.2
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0005s06500g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00
OPa430073 XM_024601610.1
Latest version!		 Populus trichocarpa 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (LOC7466848), mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0005s06500g ( XM_002306997.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_002307033.2 Populus trichocarpa hypothetical protein (POPTR_0005s06500g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa11827
    Clone ID Related Accession (Same CDS sequence) XM_002306997.2
    Accession Version XM_002306997.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1437bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008471). On Dec 16, 2013 this sequence version replaced XM_002306997.1. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCAGTGT GTGTGAGACA ATCAAGAAAC AATGTCATCA ACCATGTCAA ATCAAAGATG 
    GGTTTGTTGG GTCTCACTAA CTTGAGTTCT TCTTTGAACA ATGATCACAG TACACTATCT 
    ACAGCTTCAC TTGCTAAACA TTTGAGGAAT CAAAGTTCGG CTTTTGAAAA CAAACCGACC 
    CTTTATAGGA CTCGGCGTTT TGAGTCCACT AAACCTCATC AAAGGTCTGG GGTGCACAGT 
    AATGGGGCCT ACAGTCAGTT TTTGGATTTC CCAGGGGGAC AGGTTGCATT CACCCCTGAA 
    ATGAGATTTT TATCTGAATC TCCCAAGGAG CGGATTCCCT GCTACCGTGT TCTTGATGAT 
    GATGGTCAGC TGATACAGGG CAGCATCGAT GTCAGTAAGG AAATTGCTGT AAAGATGTAC 
    AGTGACATGG CTACTCTTCA AATCATGGAC ACTATCTTCT ATGAAGCCCA GAGGCAAGGA 
    AGAATTTCAT TCTATCTGAC TACAATTGGA GAAGAGGCCA TTAATATTGC ATCAGCAGCA 
    GCTCTTACCA TTGATGATTT TGTTGTCCCA CAGTACAGGG AACCTGGAGT CCTATTATGG 
    CGTGGTTTTA CCCTTCAACA ATTTGCAAAT CAGTGTTTCA GTAACAAAGA TGATGATTGC 
    AGAGGCAGGC AGATGCCTAT CCATTATGGA TCAAAAAAGC TTAATTACTT TACAGTAGCA 
    TCGACAATTG CTTCACAACT TCCGCATGCA GTCGGTGTTG CATATTCTCT TAAAATGGAT 
    GGAAAAGATG CATGTGCGGT GACTTATTTT GGTGATGGTG GCTCAAGTGA GGGAGATTTT 
    CATGCCGCTT TAAATTTTGC GGCAGTCACG GAGGCCCCAG TTTTATTTAT CTGTCGGAAC 
    AATGGATGGG CTATTAGTAC TCCTACTTCA GACCAGTTCC GAAGTGATGG TATTGTTGTC 
    AGAGGGGAGG CTTATGGAGT GCGAAGTATA CGTGTAGATG GTAATGATAC TCTTGCCTTA 
    TATAGTACAG TTCGTGCTGC TCGTGAAATG GCTATACGTG AACAAAGACC AATCTTAGTT 
    GAGGCTCTGA CATATCGAGT GGGACACCAC TCCACATCAG ATGATTCCAC CAAGTATCGC 
    CCAGTTGATG AAATTGAGTT GTGGAGATCA GCAAGAGACC CTATTGCTAG ATTCCGAAAA 
    TGGATAGAAA GCAATGGTTG GTGGAGTGGT GAAGCTGAGT CAGAGCTTCG AAGCAATGTG 
    AGGAAGCAGC TATTAGATGC AATTGAAGTA GCAGAGAGAA CAAAGAAACC TCCACTTGTG 
    GACATTTTCA CGGATGTGTA TGATGTTCCC CCGTCCAACC TCAGCGAGCA AGAGAAATGG 
    CTTAGAGAGA CCATCAAGAT ACACCCACAA GATTACCCAT CAGACTTTAC TCTGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002307033.2
    CDS53..1489
    Translation

    Target ORF information:

    RefSeq Version XM_002306997.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0005s06500g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002306997.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCAGTGT GTGTGAGACA ATCAAGAAAC AATGTCATCA ACCATGTCAA ATCAAAGATG 
    GGTTTGTTGG GTCTCACTAA CTTGAGTTCT TCTTTGAACA ATGATCACAG TACACTATCT 
    ACAGCTTCAC TTGCTAAACA TTTGAGGAAT CAAAGTTCGG CTTTTGAAAA CAAACCGACC 
    CTTTATAGGA CTCGGCGTTT TGAGTCCACT AAACCTCATC AAAGGTCTGG GGTGCACAGT 
    AATGGGGCCT ACAGTCAGTT TTTGGATTTC CCAGGGGGAC AGGTTGCATT CACCCCTGAA 
    ATGAGATTTT TATCTGAATC TCCCAAGGAG CGGATTCCCT GCTACCGTGT TCTTGATGAT 
    GATGGTCAGC TGATACAGGG CAGCATCGAT GTCAGTAAGG AAATTGCTGT AAAGATGTAC 
    AGTGACATGG CTACTCTTCA AATCATGGAC ACTATCTTCT ATGAAGCCCA GAGGCAAGGA 
    AGAATTTCAT TCTATCTGAC TACAATTGGA GAAGAGGCCA TTAATATTGC ATCAGCAGCA 
    GCTCTTACCA TTGATGATTT TGTTGTCCCA CAGTACAGGG AACCTGGAGT CCTATTATGG 
    CGTGGTTTTA CCCTTCAACA ATTTGCAAAT CAGTGTTTCA GTAACAAAGA TGATGATTGC 
    AGAGGCAGGC AGATGCCTAT CCATTATGGA TCAAAAAAGC TTAATTACTT TACAGTAGCA 
    TCGACAATTG CTTCACAACT TCCGCATGCA GTCGGTGTTG CATATTCTCT TAAAATGGAT 
    GGAAAAGATG CATGTGCGGT GACTTATTTT GGTGATGGTG GCTCAAGTGA GGGAGATTTT 
    CATGCCGCTT TAAATTTTGC GGCAGTCACG GAGGCCCCAG TTTTATTTAT CTGTCGGAAC 
    AATGGATGGG CTATTAGTAC TCCTACTTCA GACCAGTTCC GAAGTGATGG TATTGTTGTC 
    AGAGGGGAGG CTTATGGAGT GCGAAGTATA CGTGTAGATG GTAATGATAC TCTTGCCTTA 
    TATAGTACAG TTCGTGCTGC TCGTGAAATG GCTATACGTG AACAAAGACC AATCTTAGTT 
    GAGGCTCTGA CATATCGAGT GGGACACCAC TCCACATCAG ATGATTCCAC CAAGTATCGC 
    CCAGTTGATG AAATTGAGTT GTGGAGATCA GCAAGAGACC CTATTGCTAG ATTCCGAAAA 
    TGGATAGAAA GCAATGGTTG GTGGAGTGGT GAAGCTGAGT CAGAGCTTCG AAGCAATGTG 
    AGGAAGCAGC TATTAGATGC AATTGAAGTA GCAGAGAGAA CAAAGAAACC TCCACTTGTG 
    GACATTTTCA CGGATGTGTA TGATGTTCCC CCGTCCAACC TCAGCGAGCA AGAGAAATGG 
    CTTAGAGAGA CCATCAAGAT ACACCCACAA GATTACCCAT CAGACTTTAC TCTGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0005s06500g ( XM_024601610.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_024457378.1 Populus trichocarpa 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (LOC7466848), mRNA.
    Price & Availability↑
    CloneID OPa430073
    Clone ID Related Accession (Same CDS sequence) XM_024601610.1
    Accession Version XM_024601610.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1437bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037289.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCAGTGT GTGTGAGACA ATCAAGAAAC AATGTCATCA ACCATGTCAA ATCAAAGATG 
    GGTTTGTTGG GTCTCACTAA CTTGAGTTCT TCTTTGAACA ATGATCACAG TACACTATCT 
    ACAGCTTCAC TTGCTAAACA TTTGAGGAAT CAAAGTTCGG CTTTTGAAAA CAAACCGACC 
    CTTTATAGGA CTCGGCGTTT TGAGTCCACT AAACCTCATC AAAGGTCTGG GGTGCACAGT 
    AATGGGGCCT ACAGTCAGTT TTTGGATTTC CCAGGGGGAC AGGTTGCATT CACCCCTGAA 
    ATGAGATTTT TATCTGAATC TCCCAAGGAG CGGATTCCCT GCTACCGTGT TCTTGATGAT 
    GATGGTCAGC TGATACAGGG CAGCATCGAT GTTGGTAAGG AAATTGCTGT AAAGATGTAC 
    AGTGACATGG CTACTCTTCA AATCATGGAC ACTATCTTCT ATGAAGCCCA GAGGCAAGGA 
    AGAATTTCAT TCTATCTGAC TACAATTGGA GAAGAGGCCA TTAATATTGC ATCAGCAGCA 
    GCTCTTACCA TTGATGATTT TGTTGTCCCA CAGTACAGGG AACCTGGAGT CCTATTATGG 
    CGTGGTTTTA CCCTTCAACA ATTTGCAAAT CAGTGTTTCA GTAACAAAGA TGATGATTGC 
    AGAGGCAGGC AGATGCCTAT CCATTATGGA TCAAAAAAGC TTAATTACTT TACAGTAGCA 
    TCGACAATTG CTTCACAACT TCCGCATGCA GTCGGTGTTG CATATTCTCT TAAAATGGAT 
    GGAAAAGATG CATGTGCGGT GACTTATTTT GGTGATGGTG GCTCAAGTGA GGGAGATTTT 
    CATGCCGCTT TAAATTTTGC GGCAGTCACG GAGGCCCCAG TTTTATTTAT CTGTCGGAAC 
    AATGGATGGG CTATTAGTAC TCCTACTTCA GACCAGTTCC GAAGTGATGG TATTGTTGTC 
    AGAGGGGAGG CTTATGGAGT GCGAAGTATA CGTGTAGATG GTAATGATAC TCTTGCCTTA 
    TATAGTACAG TTCGTGCTGC TCGTGAAATG GCTATACGTG AACAAAGACC AATCTTAGTT 
    GAGGCTCTGA CATATCGAGT GGGACACCAC TCCACATCAG ATGATTCCAC CAAGTATCGC 
    CCAGTTGATG AAATTGAGTT GTGGAGATCA GCAAGAGACC CTATTGCTAG ATTCCGAAAA 
    TGGATAGAAA GCAATGGTTG GTGGAGTGGT GAAGCTGAGT CAGAGCTTCG AAGCAATGTG 
    AGGAAGCAGC TATTAGATGC AATTGAAGTA GCAGAGAGAA CAAAGAAACC TCCACTTGTG 
    GACATTTTCA CGGATGTGTA TGATGTTCCC CCGTCCAACC TCAGCGAGCA AGAGAAATGG 
    CTTAGAGAGA CCATCAAGAT ACACCCACAA GATTACCCAT CAGACTTTAC TCTGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024457378.1
    CDS123..1559
    Translation

    Target ORF information:

    RefSeq Version XM_024601610.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (LOC7466848), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024601610.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCAGTGT GTGTGAGACA ATCAAGAAAC AATGTCATCA ACCATGTCAA ATCAAAGATG 
    GGTTTGTTGG GTCTCACTAA CTTGAGTTCT TCTTTGAACA ATGATCACAG TACACTATCT 
    ACAGCTTCAC TTGCTAAACA TTTGAGGAAT CAAAGTTCGG CTTTTGAAAA CAAACCGACC 
    CTTTATAGGA CTCGGCGTTT TGAGTCCACT AAACCTCATC AAAGGTCTGG GGTGCACAGT 
    AATGGGGCCT ACAGTCAGTT TTTGGATTTC CCAGGGGGAC AGGTTGCATT CACCCCTGAA 
    ATGAGATTTT TATCTGAATC TCCCAAGGAG CGGATTCCCT GCTACCGTGT TCTTGATGAT 
    GATGGTCAGC TGATACAGGG CAGCATCGAT GTTGGTAAGG AAATTGCTGT AAAGATGTAC 
    AGTGACATGG CTACTCTTCA AATCATGGAC ACTATCTTCT ATGAAGCCCA GAGGCAAGGA 
    AGAATTTCAT TCTATCTGAC TACAATTGGA GAAGAGGCCA TTAATATTGC ATCAGCAGCA 
    GCTCTTACCA TTGATGATTT TGTTGTCCCA CAGTACAGGG AACCTGGAGT CCTATTATGG 
    CGTGGTTTTA CCCTTCAACA ATTTGCAAAT CAGTGTTTCA GTAACAAAGA TGATGATTGC 
    AGAGGCAGGC AGATGCCTAT CCATTATGGA TCAAAAAAGC TTAATTACTT TACAGTAGCA 
    TCGACAATTG CTTCACAACT TCCGCATGCA GTCGGTGTTG CATATTCTCT TAAAATGGAT 
    GGAAAAGATG CATGTGCGGT GACTTATTTT GGTGATGGTG GCTCAAGTGA GGGAGATTTT 
    CATGCCGCTT TAAATTTTGC GGCAGTCACG GAGGCCCCAG TTTTATTTAT CTGTCGGAAC 
    AATGGATGGG CTATTAGTAC TCCTACTTCA GACCAGTTCC GAAGTGATGG TATTGTTGTC 
    AGAGGGGAGG CTTATGGAGT GCGAAGTATA CGTGTAGATG GTAATGATAC TCTTGCCTTA 
    TATAGTACAG TTCGTGCTGC TCGTGAAATG GCTATACGTG AACAAAGACC AATCTTAGTT 
    GAGGCTCTGA CATATCGAGT GGGACACCAC TCCACATCAG ATGATTCCAC CAAGTATCGC 
    CCAGTTGATG AAATTGAGTT GTGGAGATCA GCAAGAGACC CTATTGCTAG ATTCCGAAAA 
    TGGATAGAAA GCAATGGTTG GTGGAGTGGT GAAGCTGAGT CAGAGCTTCG AAGCAATGTG 
    AGGAAGCAGC TATTAGATGC AATTGAAGTA GCAGAGAGAA CAAAGAAACC TCCACTTGTG 
    GACATTTTCA CGGATGTGTA TGATGTTCCC CCGTCCAACC TCAGCGAGCA AGAGAAATGG 
    CTTAGAGAGA CCATCAAGAT ACACCCACAA GATTACCCAT CAGACTTTAC TCTGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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