ORF » Species Summary » Populus trichocarpa » LOC7462032 cDNA ORF clone

LOC7462032 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7462032 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7462032 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa29354 XM_002320408.3
Latest version!		 Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa443630 XM_024585585.1
Latest version!		 Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
View Old Accession Versions >>
OPa29354 XM_002320408.2 Populus trichocarpa hypothetical protein (POPTR_0014s14650g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC7462032 ( XM_002320408.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002320444.1 Populus trichocarpa hypothetical protein (POPTR_0014s14650g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa29354
    Clone ID Related Accession (Same CDS sequence) XM_002320408.2 , XM_002320408.3
    Accession Version XM_002320408.2 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1707bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008480). On Dec 16, 2013 this sequence version replaced XM_002320408.1. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG GCCTCAGCCA TGTGGGAAGA CGACCTTCAA 
    AGTGTTGTGC AGATGGGATA TGGTCAGAAT CATCAGGAGA GCTTTCAAGG CTCAGTGCCC 
    TCAACTCACA TGAAAATTGA GCTATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002320444.1
    CDS454..2160
    Translation

    Target ORF information:

    RefSeq Version XM_002320408.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0014s14650g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002320408.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG GCCTCAGCCA TGTGGGAAGA CGACCTTCAA 
    AGTGTTGTGC AGATGGGATA TGGTCAGAAT CATCAGGAGA GCTTTCAAGG CTCAGTGCCC 
    TCAACTCACA TGAAAATTGA GCTATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7462032 ( XM_002320408.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002320444.1 Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa29354
    Clone ID Related Accession (Same CDS sequence) XM_002320408.2 , XM_002320408.3
    Accession Version XM_002320408.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1707bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product transcription factor bHLH77 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037298.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002320408.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG GCCTCAGCCA TGTGGGAAGA CGACCTTCAA 
    AGTGTTGTGC AGATGGGATA TGGTCAGAAT CATCAGGAGA GCTTTCAAGG CTCAGTGCCC 
    TCAACTCACA TGAAAATTGA GCTATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002320444.1
    CDS443..2149
    Translation

    Target ORF information:

    RefSeq Version XM_002320408.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002320408.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG GCCTCAGCCA TGTGGGAAGA CGACCTTCAA 
    AGTGTTGTGC AGATGGGATA TGGTCAGAAT CATCAGGAGA GCTTTCAAGG CTCAGTGCCC 
    TCAACTCACA TGAAAATTGA GCTATAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7462032 ( XM_024585585.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024441353.1 Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa443630
    Clone ID Related Accession (Same CDS sequence) XM_024585585.1
    Accession Version XM_024585585.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1719bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product transcription factor bHLH78 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037298.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG CTAGAATTTT ATTCTTCAGG CCTCAGCCAT 
    GTGGGAAGAC GACCTTCAAA GTGTTGTGCA GATGGGATAT GGTCAGAATC ATCAGGAGAG 
    CTTTCAAGGC TCAGTGCCCT CAACTCACAT GAAAATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024441353.1
    CDS446..2164
    Translation

    Target ORF information:

    RefSeq Version XM_024585585.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa transcription factor bHLH77 (LOC7462032), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024585585.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAAGAG ATAAGTTGTT TGTGAGCGAG GGAGCCAACA CAGCAGCAAC CATTTGGAAT 
    TCTTGCAGTT TTGGAATGGA AATGCAAGCC AATGAGCTGA GTTGCGGTCC AGAGAAACTT 
    GCCAATTGCT TTCTCAATCC CAATTGGGAC AACTCATTGG ATCAGAGCGA TCCCTTTGAG 
    TCTGCTTTGA GCTCCATTGT CTCATCACCT GTTGCATCCG GTGCCAACGC AAACGCCAAC 
    GCCATTCCTA ATGCTGGCGT TGGTGGTGAC AGTCTTATGA TTAGAGAACT TATTGGAAGA 
    CTAGGAAACA TTTGCAATTC TGGAGACATT TCACTACAAT CTTTTGTTAA CAATAATAAC 
    AATAGCACTA ACACTTCTTG CTATAGTACC CCAATGAATT CCCCTCCAAA GCTGAATCTC 
    TCGATGATGG ATTCACAAAT GAGAGGAAAT CTGCCAATTC CTGGAAACAG CGTAGTAAAG 
    CATCCAGGTT TAGCACCATT TCCAGCTGAT TTTGTAGAGA GGGCTGCACG ATATTCTTGC 
    TTTGGTAGCA ACAATCCTGG AGGCATCAAT AAACAATTCG GATTGAATGA ATCCGAATTG 
    ATTAATAGGT TGATGCCACG AGTAGAACCT GGTAAGCTCT CGAGAGTTTC GAGTAACAAT 
    TCAATGAAGG TCACTGTATC GCAAGCAAAT GTTCAAGAAA GCAACAAGAG CTCACCCCAG 
    GATGGGAGTT TGAATTCTGA AAAGAAATTC AGTAGGCAGT CAAGGCCTAC AACATCAGAG 
    AATGGAGATT CCAGGGAAGA ATCTTCATTG TCTGAGCAGG TCCCAGGTGG GAAATTGAGC 
    ATGAAATCCC AGAATGACGC CAATTCCAGG AAAAGAAAAT CAATTCCCAG AGGAAAAGCC 
    AAAGAAACTC CCTCTTCATC TCCATCTGCT TCTGATGTCA AGGTTGCAGC AGAGAATGAT 
    GAATCGAAGG CAAAAAGAAG CAAATCGGAT GAAACTAATG GCAGTGACAA GGATACAGCA 
    AAGGAAAAGG AAGAAGAAAA TGGAAATCAG AAACAGAACA AAAATAATTC AAAGCCGCCA 
    GAGCCACCAA AGGATTATAT CCATGTCAGA GCCAGAAGGG GTCAGGCTAC AGATAGCCAC 
    AGTCTTGCTG AAAGAGTTAG AAGAGAGAAA ATCAGTGAAA GAATGAAGTT CCTCCAGGAT 
    CTTGTTCCCG GATGCAATAA GGTTACTGGG AAAGCAGTGA TGCTTGACGA GATTATAAAC 
    TATGTACAGT CATTGCAGCG CCAGGTTGAG TTTCTGTCAA TGAAGTTGTC ATCTGTGAAT 
    CCGAGGATGG AGATCAACAT GGAAACTTTG TTGTCCAAGG ATATTTTCCA ATCCCGTGGA 
    TCTATGCCAC ATAGTCTTTA TCCATTAGAT GCCTCCACGC CGGTATTCCC TTATGGTTAC 
    CAATCCCAGC AAGGGTTAGC CCTGCAAAAT GGCATGCCAA GCAATGCCGA AACCCAGTTC 
    TCTATGAACC CATTAAATGC TGCGTTGCGG CGAAACCCGA GCATGCATTT GCCACACCTT 
    GATGGTTTCG GTGATCCTGC TGCTCTTCAG CTAGAATTTT ATTCTTCAGG CCTCAGCCAT 
    GTGGGAAGAC GACCTTCAAA GTGTTGTGCA GATGGGATAT GGTCAGAATC ATCAGGAGAG 
    CTTTCAAGGC TCAGTGCCCT CAACTCACAT GAAAATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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