POPTR_0018s14310g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

Gene
Clones
gRNAs

Summary

Gene Symbol	POPTR_0018s14310g
Entrez Gene ID	18107850
Full Name	arabinose sensitive 1 family protein
Gene Type	protein-coding
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

mRNA and Protein(s)

mRNA	Protein	Name
XM_024590141.1	XP_024445909.1	L-arabinokinase
XM_006372144.1	XP_006372206.1	arabinose sensitive 1 family protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following POPTR_0018s14310g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0018s14310g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OPa36496	XM_006372144.1 Latest version!	Populus trichocarpa arabinose sensitive 1 family protein (POPTR_0018s14310g) mRNA, complete cds.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00
OPa447674	XM_024590141.1 Latest version!	Populus trichocarpa L-arabinokinase (LOC18107850), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

POPTR_0018s14310g ( XM_006372144.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006372206.1 Populus trichocarpa arabinose sensitive 1 family protein (POPTR_0018s14310g) mRNA, complete cds.

Price & Availability↑

CloneID	OPa36496
Clone ID Related Accession (Same CDS sequence)	XM_006372144.1
Accession Version	XM_006372144.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2862bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1388332800000
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Product	arabinose sensitive 1 family protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008484). COMPLETENESS: incomplete on both ends.

ATGGAGGGAA TAGTATCGTC AAAGCAGCAG CAGCCTTTGG TTTTTGCTTA CTATGTTACT 
GGTCATGGAT TTGGTCATGC CACTCGTGTT GTTGAGGTGG TTCGTCATTT AATTCTAGAG 
GGACATATTG TTCATGTGGT TACAGCTGCA CCAGACTTTG TTTACACTTC TGCAATACAG 
TCGCCGAGAC TGTTCCTTCG AAAGGAGCTG CTGGATTGTG GAGCTGTTCA ATGTGATGCC 
TTGACAGTTG ATCGTATTGC CTCCTTGGAA AAGTATTCTG AGACAGCAGT AATCCCTCGA 
GAGACTATCT TAGCAACAGA AGTGAAGTGG TTGCAGTCTA TTAAAGCTGA CCTAGTGGTT 
TCAGATGTTG TTCCTGTTGC CTGCCGAGCA GCTGCAGATG CCGGCATCCG TTCTGTTTGT 
TGCACCAACT TCAGTTGGGA CTTCATCTAC GCAGAATATG TGGTGGATGC TGGATCACAA 
CATCGCTCGA TTGTTCTGCA GATTGCCGAG GACTATTCTC ACTGTGAATT TCTAATACGT 
CTACCAGGAT ATTGTCCAAT GCCTGCTTTT CGTGATGTTC TTGATGTACC CCTTGTTGTG 
AGGGGACTGC ACAAATCCAG AGCAGAGGTC AGGAAGGAGC TCGGAGTTGA AGAGGATGTG 
AAGCTAGTAA TTTTCAATTT TGGCGGACAG CCTGCTGGGT GGAAGTTACA GGAGGAGTTT 
CTACCTCCTG GTTGGAAGTG TGTGGTATGT GGGGGTTCTG ACAAGGAAGA ATATCCCCCG 
AATTTCATCA AGCTTCCGAA AGATGCTTAT ACGCCAGATG TGATAGCAGC TTCAGACTGC 
ATGCTTGGGA AAATTGGATA TGGCACATTT AGTGAAGCTA TGGCATACAA GTTGCCGTTT 
GTGTTTGTAC GAAGAGATTA CTTTAATGAA GAGCTGTTTT TGAGAAACAT GCTTGAGCAT 
TATCATGGAG GTGTTGAGAT GATTAGGAGA GATTTGCTGA CAGGATGCTG GCAACCCTAC 
CTTGAGCGTG CCATTAGATT GAAACCATGC TATGATGGAG GTGTCAATGG CGGTGAGGTT 
GCTGCTGGCA TACTTCAGGA TACAGCTCTT GGAAAAAATC ATGCTTCTGA TAAGCCTTGT 
GGAGCAAGAA GATTGCGAGA TGCGATTGTG CTTGGATATC AACTACAAAG AGTTAACAAC 
AGAATTATAG GCATTCCAGA TTGGTACAAT GTTGAAGAAA ACAAGCTTGT AGGTCGTTCA 
TCAGAAGGCT CCCAATTCTT GAGAGAGGTA GAAGACTTTG AGATTCTTCA CGGTGACCCT 
CAAGGTCTTC CCGATACAAT GGCGTTCTTA AAGAGCTTGG CAGACATAGG TGCAGGACAT 
GACTCAAAAA AGGATACCGA CGATGAAGTG CGGGAGGATT TGGCTGCTGC TGGATTGTTC 
AACTGGGAGG AGGAAATATT TGTAGCAAGA GCACCAGGGA GATTAGATGT CTTGGGTGGT 
ATTGCTGACT ATTCAGGAAG TCTAGTTTTG CAGATGCCTA TCAGAGAAGC TTGTCATGTT 
GCTGTACAAA AGAATCATCC AAGTAAACAG AAGCTGTGGA AACATGCACA GGCTAGACAT 
CATGCTGATC ACGAGAAACT TGCACCCATT CTAGAAATTG TGTCATTGGG CTCAGAATTG 
AATAATCGTG GACCAACATT TGACATGGAT CTATCTGATT TTAAAGATGA TGAGAAGCCA 
ATATCTTATG AGGCAGCAAG GAAGTATTTT GCCAAAGATC CATCTCAAAA GTGGGCAGCA 
TATGTTGCTG GGACAATTGT GGTACTAATG ACAGAGTTGG GTGTTTGTTT TGAGAACAGT 
ATCAGCATAC TGGTTTCTTC AGGAGTCCCA GAAGGCAAAG GCGTTTCTTC ATCTGCAGCA 
TTGGAGGTTG CCACCATGTC TGCTATTGCT GCTGCTCATG GTTTAAACAT TCCCCCGCGA 
GATCTTGCTT TGCTTTGCCA AAAGGTGGAG AATCATGTTG TTGGAGCCCC ATGTGGGGTG 
ATGGATCAAA TGACCTCTGC GTGTGGGGAA GCAAACAAAC TTCTAGCGAT GGTATGCCAG 
TTGATATCAG GATTAAGACA CAGTGTTGGT GGTTCAGATT ATGGATCTGT GAGGATTGGA 
ACTTATATGG GCCGAAAGAT AATAAAGTCT ACAGCTGCTG GACTGTCGAA GGGAAACAAC 
AAAGACGACA TGGACAAGGA TGGCATCGAA CTGCTTGATA ATGAGGCTTC ATTAGATTAC 
TTATGCAATC TCCCACCTCA TAGGTACGAA GGTGTGTATG TTGATAAGCT TCCAGAGACT 
ATTACAGGTG AAGAATTCAT AAAGAAATAT GTTAATCATG AGGATTCAGT CACAACAATA 
GATCCCAAAC ATATTTATGC AGTTAAAGCA CCAACCAGGC ATCCTGTTTA TGAGAACTTC 
CGAGTCGAGG CTTTCAAAGC ATTATTAACT GCTACTACTT CGGATGGACA ACTTTCTGCT 
CTTGGGGAAC TTATGTATCA GTGTCATTAC AGCTATGGTG CATGTGGACT TGGCTCTGAT 
GGGACAGACA GACTGGTAGA ATTGGTACAG GAAATGCAGC ACAGCAAGGC TTCCAAATCT 
GAAAATGGGA CTCTGTATGG AGCGAAGATC ACCGGAGGGG GAAGCGGTGG CACAGTTTGT 
GTTATCGGAA AGAATTTTGT GGGAAGCAAC GAGCAAATTC TTGAAATTCA ACGGAGGTAC 
CACGTTGCCA CAGGCTTTAA GCCATACGTG TTTGAGGGTT CTTCTCCAGG GGCAGGAAAG 
TTCGGATACC TGAAAATTCG CCGCCGCAAC GCCACCGAAT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006372206.1
CDS	1..2862
Translation	MEGIVSSKQQQPLVFAYYVTGHGFGHATRVVEVVRHLILEGHIVHVVTAAPDFVYTSAIQSPRLFLRKELLDCGAVQCDALTVDRIASLEKYSETAVIPRETILATEVKWLQSIKADLVVSDVVPVACRAAADAGIRSVCCTNFSWDFIYAEYVVDAGSQHRSIVLQIAEDYSHCEFLIRLPGYCPMPAFRDVLDVPLVVRGLHKSRAEVRKELGVEEDVKLVIFNFGGQPAGWKLQEEFLPPGWKCVVCGGSDKEEYPPNFIKLPKDAYTPDVIAASDCMLGKIGYGTFSEAMAYKLPFVFVRRDYFNEELFLRNMLEHYHGGVEMIRRDLLTGCWQPYLERAIRLKPCYDGGVNGGEVAAGILQDTALGKNHASDKPCGARRLRDAIVLGYQLQRVNNRIIGIPDWYNVEENKLVGRSSEGSQFLREVEDFEILHGDPQGLPDTMAFLKSLADIGAGHDSKKDTDDEVREDLAAAGLFNWEEEIFVARAPGRLDVLGGIADYSGSLVLQMPIREACHVAVQKNHPSKQKLWKHAQARHHADHEKLAPILEIVSLGSELNNRGPTFDMDLSDFKDDEKPISYEAARKYFAKDPSQKWAAYVAGTIVVLMTELGVCFENSISILVSSGVPEGKGVSSSAALEVATMSAIAAAHGLNIPPRDLALLCQKVENHVVGAPCGVMDQMTSACGEANKLLAMVCQLISGLRHSVGGSDYGSVRIGTYMGRKIIKSTAAGLSKGNNKDDMDKDGIELLDNEASLDYLCNLPPHRYEGVYVDKLPETITGEEFIKKYVNHEDSVTTIDPKHIYAVKAPTRHPVYENFRVEAFKALLTATTSDGQLSALGELMYQCHYSYGACGLGSDGTDRLVELVQEMQHSKASKSENGTLYGAKITGGGSGGTVCVIGKNFVGSNEQILEIQRRYHVATGFKPYVFEGSSPGAGKFGYLKIRRRNATE

Target ORF information:

RefSeq Version	XM_006372144.1
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Definition	Populus trichocarpa arabinose sensitive 1 family protein (POPTR_0018s14310g) mRNA, complete cds.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006372144.1

ORF Insert Sequence:

ATGGAGGGAA TAGTATCGTC AAAGCAGCAG CAGCCTTTGG TTTTTGCTTA CTATGTTACT 
GGTCATGGAT TTGGTCATGC CACTCGTGTT GTTGAGGTGG TTCGTCATTT AATTCTAGAG 
GGACATATTG TTCATGTGGT TACAGCTGCA CCAGACTTTG TTTACACTTC TGCAATACAG 
TCGCCGAGAC TGTTCCTTCG AAAGGAGCTG CTGGATTGTG GAGCTGTTCA ATGTGATGCC 
TTGACAGTTG ATCGTATTGC CTCCTTGGAA AAGTATTCTG AGACAGCAGT AATCCCTCGA 
GAGACTATCT TAGCAACAGA AGTGAAGTGG TTGCAGTCTA TTAAAGCTGA CCTAGTGGTT 
TCAGATGTTG TTCCTGTTGC CTGCCGAGCA GCTGCAGATG CCGGCATCCG TTCTGTTTGT 
TGCACCAACT TCAGTTGGGA CTTCATCTAC GCAGAATATG TGGTGGATGC TGGATCACAA 
CATCGCTCGA TTGTTCTGCA GATTGCCGAG GACTATTCTC ACTGTGAATT TCTAATACGT 
CTACCAGGAT ATTGTCCAAT GCCTGCTTTT CGTGATGTTC TTGATGTACC CCTTGTTGTG 
AGGGGACTGC ACAAATCCAG AGCAGAGGTC AGGAAGGAGC TCGGAGTTGA AGAGGATGTG 
AAGCTAGTAA TTTTCAATTT TGGCGGACAG CCTGCTGGGT GGAAGTTACA GGAGGAGTTT 
CTACCTCCTG GTTGGAAGTG TGTGGTATGT GGGGGTTCTG ACAAGGAAGA ATATCCCCCG 
AATTTCATCA AGCTTCCGAA AGATGCTTAT ACGCCAGATG TGATAGCAGC TTCAGACTGC 
ATGCTTGGGA AAATTGGATA TGGCACATTT AGTGAAGCTA TGGCATACAA GTTGCCGTTT 
GTGTTTGTAC GAAGAGATTA CTTTAATGAA GAGCTGTTTT TGAGAAACAT GCTTGAGCAT 
TATCATGGAG GTGTTGAGAT GATTAGGAGA GATTTGCTGA CAGGATGCTG GCAACCCTAC 
CTTGAGCGTG CCATTAGATT GAAACCATGC TATGATGGAG GTGTCAATGG CGGTGAGGTT 
GCTGCTGGCA TACTTCAGGA TACAGCTCTT GGAAAAAATC ATGCTTCTGA TAAGCCTTGT 
GGAGCAAGAA GATTGCGAGA TGCGATTGTG CTTGGATATC AACTACAAAG AGTTAACAAC 
AGAATTATAG GCATTCCAGA TTGGTACAAT GTTGAAGAAA ACAAGCTTGT AGGTCGTTCA 
TCAGAAGGCT CCCAATTCTT GAGAGAGGTA GAAGACTTTG AGATTCTTCA CGGTGACCCT 
CAAGGTCTTC CCGATACAAT GGCGTTCTTA AAGAGCTTGG CAGACATAGG TGCAGGACAT 
GACTCAAAAA AGGATACCGA CGATGAAGTG CGGGAGGATT TGGCTGCTGC TGGATTGTTC 
AACTGGGAGG AGGAAATATT TGTAGCAAGA GCACCAGGGA GATTAGATGT CTTGGGTGGT 
ATTGCTGACT ATTCAGGAAG TCTAGTTTTG CAGATGCCTA TCAGAGAAGC TTGTCATGTT 
GCTGTACAAA AGAATCATCC AAGTAAACAG AAGCTGTGGA AACATGCACA GGCTAGACAT 
CATGCTGATC ACGAGAAACT TGCACCCATT CTAGAAATTG TGTCATTGGG CTCAGAATTG 
AATAATCGTG GACCAACATT TGACATGGAT CTATCTGATT TTAAAGATGA TGAGAAGCCA 
ATATCTTATG AGGCAGCAAG GAAGTATTTT GCCAAAGATC CATCTCAAAA GTGGGCAGCA 
TATGTTGCTG GGACAATTGT GGTACTAATG ACAGAGTTGG GTGTTTGTTT TGAGAACAGT 
ATCAGCATAC TGGTTTCTTC AGGAGTCCCA GAAGGCAAAG GCGTTTCTTC ATCTGCAGCA 
TTGGAGGTTG CCACCATGTC TGCTATTGCT GCTGCTCATG GTTTAAACAT TCCCCCGCGA 
GATCTTGCTT TGCTTTGCCA AAAGGTGGAG AATCATGTTG TTGGAGCCCC ATGTGGGGTG 
ATGGATCAAA TGACCTCTGC GTGTGGGGAA GCAAACAAAC TTCTAGCGAT GGTATGCCAG 
TTGATATCAG GATTAAGACA CAGTGTTGGT GGTTCAGATT ATGGATCTGT GAGGATTGGA 
ACTTATATGG GCCGAAAGAT AATAAAGTCT ACAGCTGCTG GACTGTCGAA GGGAAACAAC 
AAAGACGACA TGGACAAGGA TGGCATCGAA CTGCTTGATA ATGAGGCTTC ATTAGATTAC 
TTATGCAATC TCCCACCTCA TAGGTACGAA GGTGTGTATG TTGATAAGCT TCCAGAGACT 
ATTACAGGTG AAGAATTCAT AAAGAAATAT GTTAATCATG AGGATTCAGT CACAACAATA 
GATCCCAAAC ATATTTATGC AGTTAAAGCA CCAACCAGGC ATCCTGTTTA TGAGAACTTC 
CGAGTCGAGG CTTTCAAAGC ATTATTAACT GCTACTACTT CGGATGGACA ACTTTCTGCT 
CTTGGGGAAC TTATGTATCA GTGTCATTAC AGCTATGGTG CATGTGGACT TGGCTCTGAT 
GGGACAGACA GACTGGTAGA ATTGGTACAG GAAATGCAGC ACAGCAAGGC TTCCAAATCT 
GAAAATGGGA CTCTGTATGG AGCGAAGATC ACCGGAGGGG GAAGCGGTGG CACAGTTTGT 
GTTATCGGAA AGAATTTTGT GGGAAGCAAC GAGCAAATTC TTGAAATTCA ACGGAGGTAC 
CACGTTGCCA CAGGCTTTAA GCCATACGTG TTTGAGGGTT CTTCTCCAGG GGCAGGAAAG 
TTCGGATACC TGAAAATTCG CCGCCGCAAC GCCACCGAAT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

POPTR_0018s14310g ( XM_024590141.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_024445909.1 Populus trichocarpa L-arabinokinase (LOC18107850), mRNA.

Price & Availability↑

CloneID	OPa447674
Clone ID Related Accession (Same CDS sequence)	XM_024590141.1
Accession Version	XM_024590141.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2916bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1523116800000
Organism	Populus trichocarpa(black cottonwood)
Product	L-arabinokinase
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037302.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGAGGGAA TAGTATCGTC AAAGCAGCAG CAACCTTTGG TTTTTGCTTA CTATGTTACT 
GGTCATGGAT TTGGTCATGC CACTCGTGTT GTTGAGGTGG TTCGTCATTT AATTCTAGAG 
GGACATATTG TTCATGTGGT TACAGCTGCA CCAGACTTTG TTTACACTTC TGCAATACAG 
TCGCCGAGAC TGTTCCTTCG AAAGGAGCTG CTGGATTGTG GAGCTGTTCA ATGTGATGCC 
TTGACAGTTG ATCGTATTGC CTCCTTGGAA AAGTATTCTG AGACAGCAGT AATCCCTCGA 
GAGACTATCT TAGCAACAGA AGTGAAGTGG TTGCAGTCTA TTAAAGCTGA CCTAGTGGTT 
TCAGATGTTG TTCCTGTTGC CTGCCGAGCA GCTGCAGATG CCGGCATCCG TTCTGTTTGT 
TGCACCAACT TCAGTTGGGA CTTCATCTAC GCAGAATATG TGGTGGATGC TGGATCACAA 
CATCGCTCGA TTGTTCTGCA GATTGCCGAG GACTATTCTC ACTGTGAATT TCTAATACGT 
CTACCAGGAT ATTGTCCAAT GCCTGCTTTT CGTGATGTTC TTGATGTACC CCTTGTTGTG 
AGGGGACTGC ACAAATCCAG AGCAGAGGTC AGGAAGGAGC TCGGAGTTGA AGAGGATGTG 
AAGCTAGTAA TTTTCAATTT TGGCGGACAG CCTGCTGGGT GGAAGTTACA GGAGGAGTTT 
CTACCTCCTG GTTGGAAGTG TGTGGTATGT GGGGGTTCTG ACAAGGAAGA ATATCCCCCG 
AATTTCATCA AGCTTCCGAA AGATGCTTAT ACGCCAGATG TGATAGCAGC TTCAGACTGC 
ATGCTTGGGA AAATTGGATA TGGCACATTT AGTGAAGCTA TGGCATACAA GTTGCCGTTT 
GTGTTTGTAC GAAGAGATTA CTTTAATGAA GAGCTGTTTT TGAGAAACAT GCTTGAGCAT 
TATCATGGAG GTGTTGAGAT GATTAGGAGA GATTTGCTGA CTGGATGCTG GCAACCCTAC 
CTTGAGCGTG CCATTAGATT GAAACCATGC TATGATGGAG GTGTCAATGG CGGTGAGGTT 
GCTGCTGGCA TACTTCAGGA TACAGCTCTT GGAAAAAATC ATGCTTCTGA TAAGCCTTGT 
GGAGCAAGAA GATTGCGAGA TGCGATTGTG CTTGGATATC AACTACAAAG AGTTAACAAC 
AGAATTATAG GCATTCCAGA TTGGTACAAT GTTGAAGAAA ACAAGCTTGT AGGTCGTTCA 
TCAGAAGGCT CCCAATTCTT GAGAGAGGTA GAAGACTTTG AGATTCTTCA CGGTGACCCT 
CAAGGTCTTC CCGATACAAT GGCGTTCTTA AAGAGCTTGG CAGACATAGG TGCAGGACAT 
GACTCAAAAA AGGATACCGA CGATGAAGTG CGGGAGGATT TGGCTGCTGC TGGATTGTTC 
AACTGGGAGG AGGAAATATT TGTAGCAAGA GCACCAGGGA GATTAGATGT CTTGGGTGGT 
ATTGCTGACT ATTCAGGAAG TCTAGTTTTG CAGATGCCTA TCAGAGAAGC TTGTCATGTT 
GCTGTACAAA AGAATCATCC AAGTAAACAG AAGCTGTGGA AACATGCACA GGCTAGACAT 
CATGCTGATC ACGAGAAACT TGCACCCATT CTAGAAATTG TGTCATTGGG CTCAGAATTG 
AATAATCGTG GACCAACATT TGACATGGAT CTATCTGATT TTAAAGATGA TGAGAAGCCA 
ATATCTTATG AGGCAGCAAG GAAGTATTTT GCCAAAGATC CATCTCAAAA GTGGGCAGCA 
TATGTTGCTG GGACAATTGT GGTACTAATG ACAGAGTTGG GTGTTTGTTT TGAGAACAGT 
ATCAGCATAC TGGTTTCTTC AGGAGTCCCA GAAGGCAAAG GCGTTTCTTC ATCTGCAGCA 
TTGGAGGTTG CCACCATGTC TGCTATTGCT GCTGCTCATG GTTTAAACAT TCCCCCGCGA 
GATCTTGCTT TGCTTTGCCA AAAGGTGGAG AATCATGTTG TTGGAGCCCC ATGTGGGGTG 
ATGGATCAAA TGACCTCTGC GTGTGGGGAA GCAAACAAAC TTCTAGCGAT GGTATGCCAG 
CCTGCTGAGG TACTAGGAGT AGTTGATATT CCTTCCCATG TACGATTTTG GGGCATAGAT 
TCAGGATTAA GACACAGTGT TGGTGGTTCA GATTATGGAT CTGTGAGGAT TGGAACTTAT 
ATGGGCCGAA AGATAATAAA GTCTACAGCT GCTGGACTGT CGAAGGGAAA CAAAAAAGAC 
GACATGGACA AGGATGGCAT CGAACTGCTT GATAATGAGG CTTCATTAGA TTACTTATGC 
AATCTCCCAC CTCATAGGTA CGAAGGTGTG TATGTTGATA AGCTTCCAGA GACTATTACA 
GGTGAAGAAT TCATAAAGAA ATATGTTAAT CATGAGGATT CAGTCACAAC AATAGATCCC 
AAACATATTT ATGCAGTTAA AGCACCAACC AGGCATCCTG TTTATGAGAA CTTCCGAGTC 
GAGGCTTTCA AAGCATTATT AACTGCTACT ACTTCGGATG GACAACTTTC TGCTCTTGGG 
GAACTTATGT ATCAGTGCCA TTACAGCTAT GGTGCATGTG GACTTGGCTC TGATGGGACA 
GACAGACTGG TAGAATTGGT ACAGGAAATG CAGCACAGCA AGGCTTCCAA ATCTGAAAAT 
GGGACTCTGT ATGGAGCGAA GATCACCGGA GGGGGAAGCG GTGGCACAGT TTGTGTTATC 
GGAAAGAATT TTGTGGGAAG CAACGAGCAA ATTCTTGAAA TTCAACGGAG GTACCACGTT 
GCCACAGGCT TTAAGCCATA CGTGTTTGAG GGTTCTTCTC CAGGGGCAGG AAAGTTCGGA 
TACCTGAAAA TTCGCCGCCG CAACGCCACC GAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_024445909.1
CDS	182..3097
Translation	MEGIVSSKQQQPLVFAYYVTGHGFGHATRVVEVVRHLILEGHIVHVVTAAPDFVYTSAIQSPRLFLRKELLDCGAVQCDALTVDRIASLEKYSETAVIPRETILATEVKWLQSIKADLVVSDVVPVACRAAADAGIRSVCCTNFSWDFIYAEYVVDAGSQHRSIVLQIAEDYSHCEFLIRLPGYCPMPAFRDVLDVPLVVRGLHKSRAEVRKELGVEEDVKLVIFNFGGQPAGWKLQEEFLPPGWKCVVCGGSDKEEYPPNFIKLPKDAYTPDVIAASDCMLGKIGYGTFSEAMAYKLPFVFVRRDYFNEELFLRNMLEHYHGGVEMIRRDLLTGCWQPYLERAIRLKPCYDGGVNGGEVAAGILQDTALGKNHASDKPCGARRLRDAIVLGYQLQRVNNRIIGIPDWYNVEENKLVGRSSEGSQFLREVEDFEILHGDPQGLPDTMAFLKSLADIGAGHDSKKDTDDEVREDLAAAGLFNWEEEIFVARAPGRLDVLGGIADYSGSLVLQMPIREACHVAVQKNHPSKQKLWKHAQARHHADHEKLAPILEIVSLGSELNNRGPTFDMDLSDFKDDEKPISYEAARKYFAKDPSQKWAAYVAGTIVVLMTELGVCFENSISILVSSGVPEGKGVSSSAALEVATMSAIAAAHGLNIPPRDLALLCQKVENHVVGAPCGVMDQMTSACGEANKLLAMVCQPAEVLGVVDIPSHVRFWGIDSGLRHSVGGSDYGSVRIGTYMGRKIIKSTAAGLSKGNKKDDMDKDGIELLDNEASLDYLCNLPPHRYEGVYVDKLPETITGEEFIKKYVNHEDSVTTIDPKHIYAVKAPTRHPVYENFRVEAFKALLTATTSDGQLSALGELMYQCHYSYGACGLGSDGTDRLVELVQEMQHSKASKSENGTLYGAKITGGGSGGTVCVIGKNFVGSNEQILEIQRRYHVATGFKPYVFEGSSPGAGKFGYLKIRRRNATE

Target ORF information:

RefSeq Version	XM_024590141.1
Organism	Populus trichocarpa(black cottonwood)
Definition	Populus trichocarpa L-arabinokinase (LOC18107850), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_024590141.1

ORF Insert Sequence:

ATGGAGGGAA TAGTATCGTC AAAGCAGCAG CAACCTTTGG TTTTTGCTTA CTATGTTACT 
GGTCATGGAT TTGGTCATGC CACTCGTGTT GTTGAGGTGG TTCGTCATTT AATTCTAGAG 
GGACATATTG TTCATGTGGT TACAGCTGCA CCAGACTTTG TTTACACTTC TGCAATACAG 
TCGCCGAGAC TGTTCCTTCG AAAGGAGCTG CTGGATTGTG GAGCTGTTCA ATGTGATGCC 
TTGACAGTTG ATCGTATTGC CTCCTTGGAA AAGTATTCTG AGACAGCAGT AATCCCTCGA 
GAGACTATCT TAGCAACAGA AGTGAAGTGG TTGCAGTCTA TTAAAGCTGA CCTAGTGGTT 
TCAGATGTTG TTCCTGTTGC CTGCCGAGCA GCTGCAGATG CCGGCATCCG TTCTGTTTGT 
TGCACCAACT TCAGTTGGGA CTTCATCTAC GCAGAATATG TGGTGGATGC TGGATCACAA 
CATCGCTCGA TTGTTCTGCA GATTGCCGAG GACTATTCTC ACTGTGAATT TCTAATACGT 
CTACCAGGAT ATTGTCCAAT GCCTGCTTTT CGTGATGTTC TTGATGTACC CCTTGTTGTG 
AGGGGACTGC ACAAATCCAG AGCAGAGGTC AGGAAGGAGC TCGGAGTTGA AGAGGATGTG 
AAGCTAGTAA TTTTCAATTT TGGCGGACAG CCTGCTGGGT GGAAGTTACA GGAGGAGTTT 
CTACCTCCTG GTTGGAAGTG TGTGGTATGT GGGGGTTCTG ACAAGGAAGA ATATCCCCCG 
AATTTCATCA AGCTTCCGAA AGATGCTTAT ACGCCAGATG TGATAGCAGC TTCAGACTGC 
ATGCTTGGGA AAATTGGATA TGGCACATTT AGTGAAGCTA TGGCATACAA GTTGCCGTTT 
GTGTTTGTAC GAAGAGATTA CTTTAATGAA GAGCTGTTTT TGAGAAACAT GCTTGAGCAT 
TATCATGGAG GTGTTGAGAT GATTAGGAGA GATTTGCTGA CTGGATGCTG GCAACCCTAC 
CTTGAGCGTG CCATTAGATT GAAACCATGC TATGATGGAG GTGTCAATGG CGGTGAGGTT 
GCTGCTGGCA TACTTCAGGA TACAGCTCTT GGAAAAAATC ATGCTTCTGA TAAGCCTTGT 
GGAGCAAGAA GATTGCGAGA TGCGATTGTG CTTGGATATC AACTACAAAG AGTTAACAAC 
AGAATTATAG GCATTCCAGA TTGGTACAAT GTTGAAGAAA ACAAGCTTGT AGGTCGTTCA 
TCAGAAGGCT CCCAATTCTT GAGAGAGGTA GAAGACTTTG AGATTCTTCA CGGTGACCCT 
CAAGGTCTTC CCGATACAAT GGCGTTCTTA AAGAGCTTGG CAGACATAGG TGCAGGACAT 
GACTCAAAAA AGGATACCGA CGATGAAGTG CGGGAGGATT TGGCTGCTGC TGGATTGTTC 
AACTGGGAGG AGGAAATATT TGTAGCAAGA GCACCAGGGA GATTAGATGT CTTGGGTGGT 
ATTGCTGACT ATTCAGGAAG TCTAGTTTTG CAGATGCCTA TCAGAGAAGC TTGTCATGTT 
GCTGTACAAA AGAATCATCC AAGTAAACAG AAGCTGTGGA AACATGCACA GGCTAGACAT 
CATGCTGATC ACGAGAAACT TGCACCCATT CTAGAAATTG TGTCATTGGG CTCAGAATTG 
AATAATCGTG GACCAACATT TGACATGGAT CTATCTGATT TTAAAGATGA TGAGAAGCCA 
ATATCTTATG AGGCAGCAAG GAAGTATTTT GCCAAAGATC CATCTCAAAA GTGGGCAGCA 
TATGTTGCTG GGACAATTGT GGTACTAATG ACAGAGTTGG GTGTTTGTTT TGAGAACAGT 
ATCAGCATAC TGGTTTCTTC AGGAGTCCCA GAAGGCAAAG GCGTTTCTTC ATCTGCAGCA 
TTGGAGGTTG CCACCATGTC TGCTATTGCT GCTGCTCATG GTTTAAACAT TCCCCCGCGA 
GATCTTGCTT TGCTTTGCCA AAAGGTGGAG AATCATGTTG TTGGAGCCCC ATGTGGGGTG 
ATGGATCAAA TGACCTCTGC GTGTGGGGAA GCAAACAAAC TTCTAGCGAT GGTATGCCAG 
CCTGCTGAGG TACTAGGAGT AGTTGATATT CCTTCCCATG TACGATTTTG GGGCATAGAT 
TCAGGATTAA GACACAGTGT TGGTGGTTCA GATTATGGAT CTGTGAGGAT TGGAACTTAT 
ATGGGCCGAA AGATAATAAA GTCTACAGCT GCTGGACTGT CGAAGGGAAA CAAAAAAGAC 
GACATGGACA AGGATGGCAT CGAACTGCTT GATAATGAGG CTTCATTAGA TTACTTATGC 
AATCTCCCAC CTCATAGGTA CGAAGGTGTG TATGTTGATA AGCTTCCAGA GACTATTACA 
GGTGAAGAAT TCATAAAGAA ATATGTTAAT CATGAGGATT CAGTCACAAC AATAGATCCC 
AAACATATTT ATGCAGTTAA AGCACCAACC AGGCATCCTG TTTATGAGAA CTTCCGAGTC 
GAGGCTTTCA AAGCATTATT AACTGCTACT ACTTCGGATG GACAACTTTC TGCTCTTGGG 
GAACTTATGT ATCAGTGCCA TTACAGCTAT GGTGCATGTG GACTTGGCTC TGATGGGACA 
GACAGACTGG TAGAATTGGT ACAGGAAATG CAGCACAGCA AGGCTTCCAA ATCTGAAAAT 
GGGACTCTGT ATGGAGCGAA GATCACCGGA GGGGGAAGCG GTGGCACAGT TTGTGTTATC 
GGAAAGAATT TTGTGGGAAG CAACGAGCAA ATTCTTGAAA TTCAACGGAG GTACCACGTT 
GCCACAGGCT TTAAGCCATA CGTGTTTGAG GGTTCTTCTC CAGGGGCAGG AAAGTTCGGA 
TACCTGAAAA TTCGCCGCCG CAACGCCACC GAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D

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POPTR_0018s14310g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

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gRNAs

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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