ORF » Species Summary » Populus trichocarpa » LOC18100809 cDNA ORF clone

LOC18100809 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC18100809 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC18100809 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

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OPa16881 XM_006382161.2
Latest version!		 Populus trichocarpa glucan endo-1,3-beta-glucosidase 5 (LOC18100809), mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
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OPa16881 XM_006382161.1 Populus trichocarpa hypothetical protein (POPTR_0006s29500g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC18100809 ( XM_006382161.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_006382223.1 Populus trichocarpa hypothetical protein (POPTR_0006s29500g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa16881
    Clone ID Related Accession (Same CDS sequence) XM_006382161.1 , XM_006382161.2
    Accession Version XM_006382161.1 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1551bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008472). COMPLETENESS: incomplete on both ends. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGGGTT TGATCAAAGG AGTGGTGTCT ACAAGGCAAA GGCAACAACC CCTTGTTGTA 
    ACCCTGCGCT GCTTATCTAT CCTTCAATTG CTGGTGGATT CCGTGAGTGG AATTGGAGTC 
    AACTGGGGAA CTCAGGCAAC GCATCCTTTG CCGCCTTCCA CTGTGGTTAA AATGCTCAGG 
    GACAACGGTT TTCAGAAGGT CAAGCTATTT GATGCTGATT CAGCAACTCT AAATGCTCTC 
    GCTAATTCTG GGATTCAAAT CATGGTGGGT ATTCCCAATG ATATGCTTTA TAATCTGGCC 
    AATAGTGAGC AAGCTGCTGA CACCTGGGTG GCCAAGAATG TCTCTTCTCA TATCTCTTCT 
    GGTGGTGCAG ACATCAGGTA CGTTGCAGTT GGAAATGAGC CATTCTTGTC ATCCTACAAT 
    GGAAGCTTTC TGGGAACAAC TCTTCCTGCT CTTCGGAATA TCCAATCAGC TTTAACAAAA 
    GCCGGACTAA GCACTCGGGT GAAAGTCACC GTTCCCCTCA ATGCTGATGT GTATGAGAGT 
    CCAACAAATC TTCCATCCGA TGGTGACTTC CGTTCAGACA TCCATGATCT CATGCTATCG 
    ATTGTCAAGT TCTTGAGCGA CAATGGGGCT CCATTCACTG TCAATATCTA TCCATTTATA 
    AGCCTTTACA GTGATCCTAA TTTCCCCCTT GGCTTTGCAT TCTTCGGCAA CAAGTCATTT 
    CCCTTGAACG ATGGTGGGAC AATTTACGAC AATGTGTTTG ATGCGAACCA TGACACCCTT 
    ATATGGGCTT TGCAGAAGAA TGGTTATGGA AGCTTGCCCG TTGTCATTGG GGAAATTGGG 
    TGGCCTACCG ACGGAGACAA AAACGCAAAC TTGAACTACG CACAGCAGTT CAACCAAGGG 
    TTTATGGATA GTGTCATTTC CAACAAGGGA ACCCCACTGC GTCCTGGTTA TGTGGATGCC 
    TATTTATTTA GTCTCATAGA CGAAGATGCC AAAAGCATTC AGCCTGGTAA TTTTGAGCGC 
    CACTGGGGAT TGTTTTACTT GGATGGACAG CCTAAGTATG CAGTTAGCCT GGTGACGGCA 
    AATTCAAAGG GTCTGGTACC GGCAAGGGAT GTACATTATT TAGCCAGACA ATGGTGTATT 
    ATGTCTCCAT CAGCAAGCCT TGATGATCCG CAGGTGGGAC CGAGTGTGAG CTATGCTTGT 
    GCTAACGCGG ACTGTACTAG TCTAGGGTAT GGAACTTCTT GTGAAAATCT GGATGCGCGG 
    GGCAACATCT CCTATGCATT TAACAGTTAC TACCAGCAGA ATAATCAACT TGAAAGTGCT 
    TGTAAGTTCC CAAATAACCT TTCAGTTGTT ATAAACAATG ACCCCTCTAC TGGGACCTGC 
    AAATTCAGGA TCATGATTCA AGGTCAAGCA GTCATCTCTG GCGCGGGAGG TGGAAAGGGA 
    TTTTCAAGGT CTAGTTTGGT AGTGTTCATC TTAGTGTTTT TTCCCCTGTA TTTTTGTGAT 
    TTTCTGGGTT TAAAGCTTAA GGTGTATGGT CTAGGGTTTT GTGATTTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006382223.1
    CDS1..1551
    Translation

    Target ORF information:

    RefSeq Version XM_006382161.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0006s29500g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006382161.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGGGTT TGATCAAAGG AGTGGTGTCT ACAAGGCAAA GGCAACAACC CCTTGTTGTA 
    ACCCTGCGCT GCTTATCTAT CCTTCAATTG CTGGTGGATT CCGTGAGTGG AATTGGAGTC 
    AACTGGGGAA CTCAGGCAAC GCATCCTTTG CCGCCTTCCA CTGTGGTTAA AATGCTCAGG 
    GACAACGGTT TTCAGAAGGT CAAGCTATTT GATGCTGATT CAGCAACTCT AAATGCTCTC 
    GCTAATTCTG GGATTCAAAT CATGGTGGGT ATTCCCAATG ATATGCTTTA TAATCTGGCC 
    AATAGTGAGC AAGCTGCTGA CACCTGGGTG GCCAAGAATG TCTCTTCTCA TATCTCTTCT 
    GGTGGTGCAG ACATCAGGTA CGTTGCAGTT GGAAATGAGC CATTCTTGTC ATCCTACAAT 
    GGAAGCTTTC TGGGAACAAC TCTTCCTGCT CTTCGGAATA TCCAATCAGC TTTAACAAAA 
    GCCGGACTAA GCACTCGGGT GAAAGTCACC GTTCCCCTCA ATGCTGATGT GTATGAGAGT 
    CCAACAAATC TTCCATCCGA TGGTGACTTC CGTTCAGACA TCCATGATCT CATGCTATCG 
    ATTGTCAAGT TCTTGAGCGA CAATGGGGCT CCATTCACTG TCAATATCTA TCCATTTATA 
    AGCCTTTACA GTGATCCTAA TTTCCCCCTT GGCTTTGCAT TCTTCGGCAA CAAGTCATTT 
    CCCTTGAACG ATGGTGGGAC AATTTACGAC AATGTGTTTG ATGCGAACCA TGACACCCTT 
    ATATGGGCTT TGCAGAAGAA TGGTTATGGA AGCTTGCCCG TTGTCATTGG GGAAATTGGG 
    TGGCCTACCG ACGGAGACAA AAACGCAAAC TTGAACTACG CACAGCAGTT CAACCAAGGG 
    TTTATGGATA GTGTCATTTC CAACAAGGGA ACCCCACTGC GTCCTGGTTA TGTGGATGCC 
    TATTTATTTA GTCTCATAGA CGAAGATGCC AAAAGCATTC AGCCTGGTAA TTTTGAGCGC 
    CACTGGGGAT TGTTTTACTT GGATGGACAG CCTAAGTATG CAGTTAGCCT GGTGACGGCA 
    AATTCAAAGG GTCTGGTACC GGCAAGGGAT GTACATTATT TAGCCAGACA ATGGTGTATT 
    ATGTCTCCAT CAGCAAGCCT TGATGATCCG CAGGTGGGAC CGAGTGTGAG CTATGCTTGT 
    GCTAACGCGG ACTGTACTAG TCTAGGGTAT GGAACTTCTT GTGAAAATCT GGATGCGCGG 
    GGCAACATCT CCTATGCATT TAACAGTTAC TACCAGCAGA ATAATCAACT TGAAAGTGCT 
    TGTAAGTTCC CAAATAACCT TTCAGTTGTT ATAAACAATG ACCCCTCTAC TGGGACCTGC 
    AAATTCAGGA TCATGATTCA AGGTCAAGCA GTCATCTCTG GCGCGGGAGG TGGAAAGGGA 
    TTTTCAAGGT CTAGTTTGGT AGTGTTCATC TTAGTGTTTT TTCCCCTGTA TTTTTGTGAT 
    TTTCTGGGTT TAAAGCTTAA GGTGTATGGT CTAGGGTTTT GTGATTTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC18100809 ( XM_006382161.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_006382223.1 Populus trichocarpa glucan endo-1,3-beta-glucosidase 5 (LOC18100809), mRNA.
    Price & Availability↑
    CloneID OPa16881
    Clone ID Related Accession (Same CDS sequence) XM_006382161.1 , XM_006382161.2
    Accession Version XM_006382161.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1551bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product glucan endo-1,3-beta-glucosidase 5
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037290.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006382161.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGGGTT TGATCAAAGG AGTGGTGTCT ACAAGGCAAA GGCAACAACC CCTTGTTGTA 
    ACCCTGCGCT GCTTATCTAT CCTTCAATTG CTGGTGGATT CCGTGAGTGG AATTGGAGTC 
    AACTGGGGAA CTCAGGCAAC GCATCCTTTG CCGCCTTCCA CTGTGGTTAA AATGCTCAGG 
    GACAACGGTT TTCAGAAGGT CAAGCTATTT GATGCTGATT CAGCAACTCT AAATGCTCTC 
    GCTAATTCTG GGATTCAAAT CATGGTGGGT ATTCCCAATG ATATGCTTTA TAATCTGGCC 
    AATAGTGAGC AAGCTGCTGA CACCTGGGTG GCCAAGAATG TCTCTTCTCA TATCTCTTCT 
    GGTGGTGCAG ACATCAGGTA CGTTGCAGTT GGAAATGAGC CATTCTTGTC ATCCTACAAT 
    GGAAGCTTTC TGGGAACAAC TCTTCCTGCT CTTCGGAATA TCCAATCAGC TTTAACAAAA 
    GCCGGACTAA GCACTCGGGT GAAAGTCACC GTTCCCCTCA ATGCTGATGT GTATGAGAGT 
    CCAACAAATC TTCCATCCGA TGGTGACTTC CGTTCAGACA TCCATGATCT CATGCTATCG 
    ATTGTCAAGT TCTTGAGCGA CAATGGGGCT CCATTCACTG TCAATATCTA TCCATTTATA 
    AGCCTTTACA GTGATCCTAA TTTCCCCCTT GGCTTTGCAT TCTTCGGCAA CAAGTCATTT 
    CCCTTGAACG ATGGTGGGAC AATTTACGAC AATGTGTTTG ATGCGAACCA TGACACCCTT 
    ATATGGGCTT TGCAGAAGAA TGGTTATGGA AGCTTGCCCG TTGTCATTGG GGAAATTGGG 
    TGGCCTACCG ACGGAGACAA AAACGCAAAC TTGAACTACG CACAGCAGTT CAACCAAGGG 
    TTTATGGATA GTGTCATTTC CAACAAGGGA ACCCCACTGC GTCCTGGTTA TGTGGATGCC 
    TATTTATTTA GTCTCATAGA CGAAGATGCC AAAAGCATTC AGCCTGGTAA TTTTGAGCGC 
    CACTGGGGAT TGTTTTACTT GGATGGACAG CCTAAGTATG CAGTTAGCCT GGTGACGGCA 
    AATTCAAAGG GTCTGGTACC GGCAAGGGAT GTACATTATT TAGCCAGACA ATGGTGTATT 
    ATGTCTCCAT CAGCAAGCCT TGATGATCCG CAGGTGGGAC CGAGTGTGAG CTATGCTTGT 
    GCTAACGCGG ACTGTACTAG TCTAGGGTAT GGAACTTCTT GTGAAAATCT GGATGCGCGG 
    GGCAACATCT CCTATGCATT TAACAGTTAC TACCAGCAGA ATAATCAACT TGAAAGTGCT 
    TGTAAGTTCC CAAATAACCT TTCAGTTGTT ATAAACAATG ACCCCTCTAC TGGGACCTGC 
    AAATTCAGGA TCATGATTCA AGGTCAAGCA GTCATCTCTG GCGCGGGAGG TGGAAAGGGA 
    TTTTCAAGGT CTAGTTTGGT AGTGTTCATC TTAGTGTTTT TTCCCCTGTA TTTTTGTGAT 
    TTTCTGGGTT TAAAGCTTAA GGTGTATGGT CTAGGGTTTT GTGATTTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006382223.1
    CDS542..2092
    Translation

    Target ORF information:

    RefSeq Version XM_006382161.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa glucan endo-1,3-beta-glucosidase 5 (LOC18100809), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006382161.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGGGTT TGATCAAAGG AGTGGTGTCT ACAAGGCAAA GGCAACAACC CCTTGTTGTA 
    ACCCTGCGCT GCTTATCTAT CCTTCAATTG CTGGTGGATT CCGTGAGTGG AATTGGAGTC 
    AACTGGGGAA CTCAGGCAAC GCATCCTTTG CCGCCTTCCA CTGTGGTTAA AATGCTCAGG 
    GACAACGGTT TTCAGAAGGT CAAGCTATTT GATGCTGATT CAGCAACTCT AAATGCTCTC 
    GCTAATTCTG GGATTCAAAT CATGGTGGGT ATTCCCAATG ATATGCTTTA TAATCTGGCC 
    AATAGTGAGC AAGCTGCTGA CACCTGGGTG GCCAAGAATG TCTCTTCTCA TATCTCTTCT 
    GGTGGTGCAG ACATCAGGTA CGTTGCAGTT GGAAATGAGC CATTCTTGTC ATCCTACAAT 
    GGAAGCTTTC TGGGAACAAC TCTTCCTGCT CTTCGGAATA TCCAATCAGC TTTAACAAAA 
    GCCGGACTAA GCACTCGGGT GAAAGTCACC GTTCCCCTCA ATGCTGATGT GTATGAGAGT 
    CCAACAAATC TTCCATCCGA TGGTGACTTC CGTTCAGACA TCCATGATCT CATGCTATCG 
    ATTGTCAAGT TCTTGAGCGA CAATGGGGCT CCATTCACTG TCAATATCTA TCCATTTATA 
    AGCCTTTACA GTGATCCTAA TTTCCCCCTT GGCTTTGCAT TCTTCGGCAA CAAGTCATTT 
    CCCTTGAACG ATGGTGGGAC AATTTACGAC AATGTGTTTG ATGCGAACCA TGACACCCTT 
    ATATGGGCTT TGCAGAAGAA TGGTTATGGA AGCTTGCCCG TTGTCATTGG GGAAATTGGG 
    TGGCCTACCG ACGGAGACAA AAACGCAAAC TTGAACTACG CACAGCAGTT CAACCAAGGG 
    TTTATGGATA GTGTCATTTC CAACAAGGGA ACCCCACTGC GTCCTGGTTA TGTGGATGCC 
    TATTTATTTA GTCTCATAGA CGAAGATGCC AAAAGCATTC AGCCTGGTAA TTTTGAGCGC 
    CACTGGGGAT TGTTTTACTT GGATGGACAG CCTAAGTATG CAGTTAGCCT GGTGACGGCA 
    AATTCAAAGG GTCTGGTACC GGCAAGGGAT GTACATTATT TAGCCAGACA ATGGTGTATT 
    ATGTCTCCAT CAGCAAGCCT TGATGATCCG CAGGTGGGAC CGAGTGTGAG CTATGCTTGT 
    GCTAACGCGG ACTGTACTAG TCTAGGGTAT GGAACTTCTT GTGAAAATCT GGATGCGCGG 
    GGCAACATCT CCTATGCATT TAACAGTTAC TACCAGCAGA ATAATCAACT TGAAAGTGCT 
    TGTAAGTTCC CAAATAACCT TTCAGTTGTT ATAAACAATG ACCCCTCTAC TGGGACCTGC 
    AAATTCAGGA TCATGATTCA AGGTCAAGCA GTCATCTCTG GCGCGGGAGG TGGAAAGGGA 
    TTTTCAAGGT CTAGTTTGGT AGTGTTCATC TTAGTGTTTT TTCCCCTGTA TTTTTGTGAT 
    TTTCTGGGTT TAAAGCTTAA GGTGTATGGT CTAGGGTTTT GTGATTTTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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