POPTR_0004s12060g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

Gene
Clones
gRNAs

Summary

Gene Symbol	POPTR_0004s12060g
Entrez Gene ID	18097700
Full Name	hypothetical protein
Gene Type	protein-coding
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

mRNA and Protein(s)

mRNA	Protein	Name
XM_006384239.1	XP_006384301.1	hypothetical protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following POPTR_0004s12060g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0004s12060g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OPa10811	XM_006384239.1 Latest version!	Populus trichocarpa hypothetical protein (POPTR_0004s12060g) mRNA, complete cds.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$559.30 $799.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

POPTR_0004s12060g ( XM_006384239.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006384301.1 Populus trichocarpa hypothetical protein (POPTR_0004s12060g) mRNA, complete cds.

Price & Availability↑

CloneID	OPa10811
Clone ID Related Accession (Same CDS sequence)	XM_006384239.1
Accession Version	XM_006384239.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3063bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1388332800000
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Product	hypothetical protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008470). COMPLETENESS: incomplete on the 5' end.

ATGGCAACGA CCTCAAATAA ACCTCAGAGA TCTCTCCAAG AAATCGAGGA CATTGTCCTC 
CGCAGAATCC TCTCAGTCTC CCTCGCCGAC TCCTCTGATC CTCGAATTTT CTACTTAGAA 
ATGACAGCAG CTGAGATTCT CAGTGAAGGC AAAGACTTGA AACTCACTCG CGACTTAATT 
GAACGTGTCT TGATCGATCG ATTGTCTGTT CAAAGCCCTA ACGCGGAACC TCCTTTCAAT 
TACCTCTTAG GCTGCTACCG TCGTGCTGTT GATGAGTTGA AGAAAATCGC CAATATGAAG 
GACAAAAATG TGAAATCAGA GCTGGAATTG TCGATCAAGC AAGTCAAGAA GTTGTCGGTT 
TCGTATTGCA GGATTCATTT AGGGAATCCT GACTTGTTTG GGGGTGATTC GAGTGTTGTT 
AGAAAGAGCG GGAATTCCAA TGTTTCTCCG GTTCTGCCCT TGATTTTTGC GATGGTTGAT 
GGGTTTAATA GTGGCGGAAT TCAGCCACCG CCGCCGGGGT TTATAGAGGA GTTTTTTAGA 
GAAGGGGATT TTGATAGCTT GGATCCGATT TTGAAGGGTT TATATGAGGA TTTGAGGGGA 
AATGTTTTGA AGGTTTCTGT TTTAGGGAAT TTTCAACAAC CATTAAGGGC TTTATTGTTT 
TTGGTTAGTT TTAATGTCGG TGCTAAATCA CTTGTTAGTC ATAAGTGGTG GATTCCGACA 
GGGGCATATG TAAATGGGAG AGTTATTGAA ATGACAAGTA TTTTGGGTCC TTTTTTTCAT 
ATTAGTGCAT GGCCTGATAA TACTATTTTT AAGAGCGAGC CGGATGTGGG GCAGCAGTGT 
TTCTCTGATG CAACAAATCG TCGACCTGCT GATTTGTTAT CTTCATTTAC TACAATTAAG 
ACTCTTGTGA ATAATTTATA TGATGGATTA GCAGAAGTGC TTCTTTGTCT TCTTAAAAAT 
GGTGATACTC GTGAGAGTGT GCTTCAGTAT CTTGCTGAGG TGATCAATAG AAATGCGACA 
AGAGCTCACA TACAGGTCGA TCCTTTATCT TGTGCAAGTT CGGGCATGTT TATCAATCTA 
AGTGCTGTCA TGCTTAAGCT ATCCGAACCT TTTTTAGATG CAAATTTGTC AAAAAGGAAC 
AAAATTGATC CAAATTACGT GTTTCACAAT AACCGTTTGG ATCTAAGAGG GTTGACAGCT 
CTGCTTGCAT CATCAGGAGA AATCACTCAA TGGCTTAATA CTCCGGGAAA AACTGATATC 
TCTGCACAAT CTAATGATGT TGAAAATCGC TTGGTACAAT CTCAAGAAGC CACCAGTTCT 
GGTAGAAGTG GTGAAAAGTC TAAATACTCA TTTATTTGTG AGTGCTTCTT TATGACTGCA 
AGGGTGCTCA ACTTGGGTCT GTTAAAAGCA TTTTCCGACT TTAAGCATCT AGTTCAGGAA 
ATTTCTAGAT GCGAAGATAT GCTCTCCACT TTTAAAGCCT TGCAGGAGCA GACGCCGTCT 
CAGCAGCTGC AGCAGGATAT TGACCGTCTT GAGAAAGATA TAGAGTTATA TTCACAGGAA 
AAGCTTTGTT ATGAAGCTCA AATATTAAGG GATGGAGCAC TTATTCAGCG TGCACTTTCT 
TTCTACCGGT TAATGTTGGT TTGGTTGGTT AGCCTGGTCG GTGGATTTAA AATGCCTCTT 
CCATCAACTT GCCCAAAGGA ATTTGCCTCA ATGCCGGAGC ATTTTGTGGA AGATGCCATG 
GAACTAATTA TATTTGCCTC TCGGATTCCA AAAGCTTTGG ATGGAGTCTT ACTGGATGAT 
TTTATGAACT TCATTATCAT GTTCATGGCA AGTCCTACAT ATATTAGAAA CCCTTATTTA 
AGAGCAAAGA TGGTTGAAGT ATTGAACTGC TGGATGCCAC GGAGAAGTGG TTCATCTGCT 
ACAGCTTCTC TATTTGAAGG GCACCAACTG TCACTTGAGT ATCTTGTAAG GAACCTCTTG 
AAGCTTTATG TTGACATTGA GCTCACAGGC TCTCACACAC AGTTCTATGA CAAGTTCAAC 
ATACGGCATA ATATTGCCGA ACTTCTTGAA TATCTATGGC TGGTCCCTAG TCATCGTGAT 
ATTTGGAGAA AGATTGCCAA GGAAGAGGAA AAGGGTGTCT ATCTGAATTT CTTGAACTTC 
CTGATCAACG ATAGCATCTA TCTTCTTGAT GAAAGTCTGA GCAAAATTCT TGAACTCAAA 
GGGTTAGAAG CTGAGATGTC CAACACCACA GAATGGGAGC GAAGACCAGC TCAAGAGAGG 
CAGGAGAGAA CCCGCCTTTT CCAGTCCCAA GAGAATATCA TCCGCATTGA CATGAAGTTG 
GCAAATGAAG ATTTGAGCAT GCTGACATTT ACATCAAAAC AGATTACAGC ACCTTTCCTT 
CTCCCTGAGA TGGTTGACAG AGTGGCCAGC ATGCTCAATT ACTTCTTGTT ACAACTTGTG 
GGTCCCCAAA GGAAATCCCT TACCCTGAAA GACCCTGAAA AGTATGAATT TCGCCCAAAA 
CAGTTGCTTG AGCAGATTGT CTGTATATAT GTTCATTTGG CGAGGGGTGA TAATGAAAAC 
ATATTCCCAG CTGCCATCTC GAAGGATGGG CGGTCATACA ATGAGCAGTT ATTTACTGCT 
GCTGTTGATG TCCTTCGGAG AATTGGTGAA GATGGGAGGG TCATCCAGGA ATTTATTGAG 
CTTGGTACAA AAGCCAGGGT TGCAGCTTGT GAGGCAATGG ATGCTGAAGC TGCCCTTGGA 
GAGATACCAG ATGAATTCCT TGATCCAATT CAGTGCACTT TGATGAAGGA TCCGGTGATC 
TTACCTTCTT CAAGAATCAC AGTTGATAGG CCTGTCATTC AAAGGCATCT TCTGAGTGAC 
AATACTGACC CCTTCAACCG ATCCCATCTT ACTGTGGACA TGTTGATTCC AAACACTGAG 
TTGAAGGCAA GAATAAAGGA GTTCGTCAGG TCCCAAGAAT TAAAGAAGCA CGGGGAAGAC 
TTCAGCTTGC AGAGGGCCAA AGATACAATC CAAACCACAA CTGAAGAAAT GTTGATTGAT 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006384301.1
CDS	1..3063
Translation	MATTSNKPQRSLQEIEDIVLRRILSVSLADSSDPRIFYLEMTAAEILSEGKDLKLTRDLIERVLIDRLSVQSPNAEPPFNYLLGCYRRAVDELKKIANMKDKNVKSELELSIKQVKKLSVSYCRIHLGNPDLFGGDSSVVRKSGNSNVSPVLPLIFAMVDGFNSGGIQPPPPGFIEEFFREGDFDSLDPILKGLYEDLRGNVLKVSVLGNFQQPLRALLFLVSFNVGAKSLVSHKWWIPTGAYVNGRVIEMTSILGPFFHISAWPDNTIFKSEPDVGQQCFSDATNRRPADLLSSFTTIKTLVNNLYDGLAEVLLCLLKNGDTRESVLQYLAEVINRNATRAHIQVDPLSCASSGMFINLSAVMLKLSEPFLDANLSKRNKIDPNYVFHNNRLDLRGLTALLASSGEITQWLNTPGKTDISAQSNDVENRLVQSQEATSSGRSGEKSKYSFICECFFMTARVLNLGLLKAFSDFKHLVQEISRCEDMLSTFKALQEQTPSQQLQQDIDRLEKDIELYSQEKLCYEAQILRDGALIQRALSFYRLMLVWLVSLVGGFKMPLPSTCPKEFASMPEHFVEDAMELIIFASRIPKALDGVLLDDFMNFIIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATASLFEGHQLSLEYLVRNLLKLYVDIELTGSHTQFYDKFNIRHNIAELLEYLWLVPSHRDIWRKIAKEEEKGVYLNFLNFLINDSIYLLDESLSKILELKGLEAEMSNTTEWERRPAQERQERTRLFQSQENIIRIDMKLANEDLSMLTFTSKQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLEQIVCIYVHLARGDNENIFPAAISKDGRSYNEQLFTAAVDVLRRIGEDGRVIQEFIELGTKARVAACEAMDAEAALGEIPDEFLDPIQCTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTVDMLIPNTELKARIKEFVRSQELKKHGEDFSLQRAKDTIQTTTEEMLID

Target ORF information:

RefSeq Version	XM_006384239.1
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Definition	Populus trichocarpa hypothetical protein (POPTR_0004s12060g) mRNA, complete cds.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006384239.1

ORF Insert Sequence:

ATGGCAACGA CCTCAAATAA ACCTCAGAGA TCTCTCCAAG AAATCGAGGA CATTGTCCTC 
CGCAGAATCC TCTCAGTCTC CCTCGCCGAC TCCTCTGATC CTCGAATTTT CTACTTAGAA 
ATGACAGCAG CTGAGATTCT CAGTGAAGGC AAAGACTTGA AACTCACTCG CGACTTAATT 
GAACGTGTCT TGATCGATCG ATTGTCTGTT CAAAGCCCTA ACGCGGAACC TCCTTTCAAT 
TACCTCTTAG GCTGCTACCG TCGTGCTGTT GATGAGTTGA AGAAAATCGC CAATATGAAG 
GACAAAAATG TGAAATCAGA GCTGGAATTG TCGATCAAGC AAGTCAAGAA GTTGTCGGTT 
TCGTATTGCA GGATTCATTT AGGGAATCCT GACTTGTTTG GGGGTGATTC GAGTGTTGTT 
AGAAAGAGCG GGAATTCCAA TGTTTCTCCG GTTCTGCCCT TGATTTTTGC GATGGTTGAT 
GGGTTTAATA GTGGCGGAAT TCAGCCACCG CCGCCGGGGT TTATAGAGGA GTTTTTTAGA 
GAAGGGGATT TTGATAGCTT GGATCCGATT TTGAAGGGTT TATATGAGGA TTTGAGGGGA 
AATGTTTTGA AGGTTTCTGT TTTAGGGAAT TTTCAACAAC CATTAAGGGC TTTATTGTTT 
TTGGTTAGTT TTAATGTCGG TGCTAAATCA CTTGTTAGTC ATAAGTGGTG GATTCCGACA 
GGGGCATATG TAAATGGGAG AGTTATTGAA ATGACAAGTA TTTTGGGTCC TTTTTTTCAT 
ATTAGTGCAT GGCCTGATAA TACTATTTTT AAGAGCGAGC CGGATGTGGG GCAGCAGTGT 
TTCTCTGATG CAACAAATCG TCGACCTGCT GATTTGTTAT CTTCATTTAC TACAATTAAG 
ACTCTTGTGA ATAATTTATA TGATGGATTA GCAGAAGTGC TTCTTTGTCT TCTTAAAAAT 
GGTGATACTC GTGAGAGTGT GCTTCAGTAT CTTGCTGAGG TGATCAATAG AAATGCGACA 
AGAGCTCACA TACAGGTCGA TCCTTTATCT TGTGCAAGTT CGGGCATGTT TATCAATCTA 
AGTGCTGTCA TGCTTAAGCT ATCCGAACCT TTTTTAGATG CAAATTTGTC AAAAAGGAAC 
AAAATTGATC CAAATTACGT GTTTCACAAT AACCGTTTGG ATCTAAGAGG GTTGACAGCT 
CTGCTTGCAT CATCAGGAGA AATCACTCAA TGGCTTAATA CTCCGGGAAA AACTGATATC 
TCTGCACAAT CTAATGATGT TGAAAATCGC TTGGTACAAT CTCAAGAAGC CACCAGTTCT 
GGTAGAAGTG GTGAAAAGTC TAAATACTCA TTTATTTGTG AGTGCTTCTT TATGACTGCA 
AGGGTGCTCA ACTTGGGTCT GTTAAAAGCA TTTTCCGACT TTAAGCATCT AGTTCAGGAA 
ATTTCTAGAT GCGAAGATAT GCTCTCCACT TTTAAAGCCT TGCAGGAGCA GACGCCGTCT 
CAGCAGCTGC AGCAGGATAT TGACCGTCTT GAGAAAGATA TAGAGTTATA TTCACAGGAA 
AAGCTTTGTT ATGAAGCTCA AATATTAAGG GATGGAGCAC TTATTCAGCG TGCACTTTCT 
TTCTACCGGT TAATGTTGGT TTGGTTGGTT AGCCTGGTCG GTGGATTTAA AATGCCTCTT 
CCATCAACTT GCCCAAAGGA ATTTGCCTCA ATGCCGGAGC ATTTTGTGGA AGATGCCATG 
GAACTAATTA TATTTGCCTC TCGGATTCCA AAAGCTTTGG ATGGAGTCTT ACTGGATGAT 
TTTATGAACT TCATTATCAT GTTCATGGCA AGTCCTACAT ATATTAGAAA CCCTTATTTA 
AGAGCAAAGA TGGTTGAAGT ATTGAACTGC TGGATGCCAC GGAGAAGTGG TTCATCTGCT 
ACAGCTTCTC TATTTGAAGG GCACCAACTG TCACTTGAGT ATCTTGTAAG GAACCTCTTG 
AAGCTTTATG TTGACATTGA GCTCACAGGC TCTCACACAC AGTTCTATGA CAAGTTCAAC 
ATACGGCATA ATATTGCCGA ACTTCTTGAA TATCTATGGC TGGTCCCTAG TCATCGTGAT 
ATTTGGAGAA AGATTGCCAA GGAAGAGGAA AAGGGTGTCT ATCTGAATTT CTTGAACTTC 
CTGATCAACG ATAGCATCTA TCTTCTTGAT GAAAGTCTGA GCAAAATTCT TGAACTCAAA 
GGGTTAGAAG CTGAGATGTC CAACACCACA GAATGGGAGC GAAGACCAGC TCAAGAGAGG 
CAGGAGAGAA CCCGCCTTTT CCAGTCCCAA GAGAATATCA TCCGCATTGA CATGAAGTTG 
GCAAATGAAG ATTTGAGCAT GCTGACATTT ACATCAAAAC AGATTACAGC ACCTTTCCTT 
CTCCCTGAGA TGGTTGACAG AGTGGCCAGC ATGCTCAATT ACTTCTTGTT ACAACTTGTG 
GGTCCCCAAA GGAAATCCCT TACCCTGAAA GACCCTGAAA AGTATGAATT TCGCCCAAAA 
CAGTTGCTTG AGCAGATTGT CTGTATATAT GTTCATTTGG CGAGGGGTGA TAATGAAAAC 
ATATTCCCAG CTGCCATCTC GAAGGATGGG CGGTCATACA ATGAGCAGTT ATTTACTGCT 
GCTGTTGATG TCCTTCGGAG AATTGGTGAA GATGGGAGGG TCATCCAGGA ATTTATTGAG 
CTTGGTACAA AAGCCAGGGT TGCAGCTTGT GAGGCAATGG ATGCTGAAGC TGCCCTTGGA 
GAGATACCAG ATGAATTCCT TGATCCAATT CAGTGCACTT TGATGAAGGA TCCGGTGATC 
TTACCTTCTT CAAGAATCAC AGTTGATAGG CCTGTCATTC AAAGGCATCT TCTGAGTGAC 
AATACTGACC CCTTCAACCG ATCCCATCTT ACTGTGGACA TGTTGATTCC AAACACTGAG 
TTGAAGGCAA GAATAAAGGA GTTCGTCAGG TCCCAAGAAT TAAAGAAGCA CGGGGAAGAC 
TTCAGCTTGC AGAGGGCCAA AGATACAATC CAAACCACAA CTGAAGAAAT GTTGATTGAT 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D

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POPTR_0004s12060g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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