Gene Symbol | LOC100272770 |
Entrez Gene ID | 100272770 |
Full Name | Nucleotide/sugar transporter family protein |
Synonyms | GRMZM2G133226 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100272770 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001308270.1 | NP_001295199.1 | uncharacterized protein LOC100272770 isoform 1 |
NM_001308271.1 | NP_001295200.1 | uncharacterized protein LOC100272770 isoform 2 precursor |
XM_020551351.2 | XP_020406940.1 | uncharacterized protein LOC100272770 isoform X2 |
XM_008678541.3 | XP_008676763.1 | uncharacterized protein LOC100272770 isoform X1 |
XM_008678541.2 | XP_008676763.1 | uncharacterized protein LOC100272770 isoform X1 |
NM_001308272.1 | NP_001295201.1 | uncharacterized protein LOC100272770 isoform 3 |
XM_020551351.1 | XP_020406940.1 | uncharacterized protein LOC100272770 isoform X2 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.
Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A
BMC genomics10299(2009 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100272770 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100272770 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa25353 | |
Clone ID Related Accession (Same CDS sequence) | NM_001308272.1 | |
Accession Version | NM_001308272.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 639bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT033938.1 and BT039385.1. Transcript Variant: This variant (3) uses an alternate splice site in the 5' region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1. ##Evidence-Data-START## Transcript exon combination :: BT039385.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096134, SAMN01096143 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAATCGG TCCGTGGAGT TAATGTTCCT ATGTATACAA CTCTACGGCG CACGACAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295201.1 |
CDS | 707..1345 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGAATCGG TCCGTGGAGT TAATGTTCCT ATGTATACAA CTCTACGGCG CACGACAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25354 | |
Clone ID Related Accession (Same CDS sequence) | NM_001308271.1 | |
Accession Version | NM_001308271.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 717bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT033938.1 and BT038882.1. Transcript Variant: This variant (2) uses an alternate splice site in the 5' region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: BT038882.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780135, SAMN01096133 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCATCAC ACTCCTTCAG GTTATTACTA CGCACCACAC CTCTTTCCTT GGCTTATTTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295200.1 |
CDS | 523..1239 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCATCAC ACTCCTTCAG GTTATTACTA CGCACCACAC CTCTTTCCTT GGCTTATTTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25355 | |
Clone ID Related Accession (Same CDS sequence) | NM_001308270.1 | |
Accession Version | NM_001308270.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1047bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT033938.1 and EE019612.2. On Apr 27, 2015 this sequence version replaced XM_008678540.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295199.1 |
CDS | 303..1349 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25352 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678541.3 , XM_008678541.2 | |
Accession Version | XM_008678541.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008678541.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCATGTGT TGCTAGTGAT GTTTAACAAA GCAGCTCTCT CTTCGTATAA TTTCCCTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008676763.1 |
CDS | 1205..2095 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCATGTGT TGCTAGTGAT GTTTAACAAA GCAGCTCTCT CTTCGTATAA TTTCCCTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25352 | |
Clone ID Related Accession (Same CDS sequence) | XM_008678541.3 , XM_008678541.2 | |
Accession Version | XM_008678541.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678541.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCATGTGT TGCTAGTGAT GTTTAACAAA GCAGCTCTCT CTTCGTATAA TTTCCCTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008676763.1 |
CDS | 1206..2096 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCATGTGT TGCTAGTGAT GTTTAACAAA GCAGCTCTCT CTTCGTATAA TTTCCCTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa59989 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551351.2 , XM_020551351.1 | |
Accession Version | XM_020551351.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 936bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_020551351.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020406940.1 |
CDS | 340..1275 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa59989 | |
Clone ID Related Accession (Same CDS sequence) | XM_020551351.2 , XM_020551351.1 | |
Accession Version | XM_020551351.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 936bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272770 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020406940.1 |
CDS | 343..1278 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGAAGG GCGGCGTGGA GAGGGGCGCG CTGCTGCCGG TCTCAGCGGA CGACGGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. |