Gene Symbol | LOC100272727 |
Entrez Gene ID | 100272727 |
Full Name | putative protein phosphatase 2C family protein |
Synonyms | GRMZM2G071196 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100272727 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001360109.1 | NP_001347038.1 | putative protein phosphatase 2C family protein |
XM_008678538.2 | XP_008676760.1 | putative protein phosphatase 2C family protein isoform X1 |
XM_008678538.3 | XP_008676760.1 | putative protein phosphatase 2C family protein isoform X1 |
NM_001147180.1 | NP_001140652.1 | putative protein phosphatase 2C family protein |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100272727 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100272727 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa11284 | |
Clone ID Related Accession (Same CDS sequence) | NM_001147180.1 | |
Accession Version | NM_001147180.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | putative protein phosphatase 2C family protein | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT039281.1. ##Evidence-Data-START## Transcript exon combination :: BT039281.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780142, SAMN00780151 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGGACAA GAGACGCCTC TAACAATCTA ACTGCTCTGC AACTCACAGT TGATTTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001140652.1 |
CDS | 899..1780 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGACAA GAGACGCCTC TAACAATCTA ACTGCTCTGC AACTCACAGT TGATTTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25330 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360109.1 , XM_008678538.2 , XM_008678538.3 | |
Accession Version | NM_001360109.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1572bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1525363200000 | |
Organism | Zea mays | |
Product | putative protein phosphatase 2C family protein | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT056215.1, BT039281.1 and DR959233.1. On Jan 27, 2018 this sequence version replaced XM_008678538.3. ##Evidence-Data-START## Transcript exon combination :: SRR3147047.1954.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780142, SAMN00780151 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347038.1 |
CDS | 99..1670 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25330 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360109.1 , XM_008678538.2 , XM_008678538.3 | |
Accession Version | XM_008678538.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1572bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | putative protein phosphatase 2C family protein isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678538.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008676760.1 |
CDS | 307..1878 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25330 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360109.1 , XM_008678538.2 , XM_008678538.3 | |
Accession Version | XM_008678538.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1572bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | putative protein phosphatase 2C family protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008678538.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008676760.1 |
CDS | 304..1875 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGCTCCT GCCTCTCCTC CGAGACCCCC GCCGCCAGCG CCGGCGCGGC GGCGTGGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |