Gene Symbol | cl19897_1 |
Entrez Gene ID | 100194408 |
Full Name | Exosome complex exonuclease RRP44 homolog A |
Synonyms | GRMZM2G031859 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » cl19897_1 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008666439.2 | XP_008664661.1 | uncharacterized protein LOC100194408 isoform X1 |
NM_001363281.1 | NP_001350210.1 | uncharacterized protein LOC100194408 |
NM_001139436.1 | NP_001132908.1 | uncharacterized protein LOC100194408 |
XM_020546678.1 | XP_020402267.1 | uncharacterized protein LOC100194408 isoform X2 |
XM_020546678.2 | XP_020402267.1 | uncharacterized protein LOC100194408 isoform X2 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following cl19897_1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cl19897_1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa06339 | |
Clone ID Related Accession (Same CDS sequence) | NM_001139436.1 | |
Accession Version | NM_001139436.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1032bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1492704000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100194408 | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BT036942.1. ##Evidence-Data-START## Transcript exon combination :: BT036942.1, SRR3147046.14529.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCTTATG TTGAAGCCCA GGCAAGAATG GATGACAGCC GCTTAGTTGA TCCACTAACT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001132908.1 |
CDS | 30..1061 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCTTATG TTGAAGCCCA GGCAAGAATG GATGACAGCC GCTTAGTTGA TCCACTAACT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa24535 | |
Clone ID Related Accession (Same CDS sequence) | XM_008666439.2 , NM_001363281.1 | |
Accession Version | NM_001363281.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2808bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1552752000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100194408 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT061562.1. On May 17, 2018 this sequence version replaced XM_008666439.2. ##Evidence-Data-START## Transcript exon combination :: BT061562.1, SRR3147024.12164.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCTGCAGA GCAAGTCATT CGTGAAGAAG ACGAAGCAAG GCCGCATCCA AAAGGTCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001350210.1 |
CDS | 108..2915 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTGCAGA GCAAGTCATT CGTGAAGAAG ACGAAGCAAG GCCGCATCCA AAAGGTCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa24535 | |
Clone ID Related Accession (Same CDS sequence) | XM_008666439.2 , NM_001363281.1 | |
Accession Version | XM_008666439.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2808bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100194408 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008666439.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCAGA GCAAGTCATT CGTGAAGAAG ACGAAGCAAG GCCGCATCCA AAAGGTCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008664661.1 |
CDS | 146..2953 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTGCAGA GCAAGTCATT CGTGAAGAAG ACGAAGCAAG GCCGCATCCA AAAGGTCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa54450 | |
Clone ID Related Accession (Same CDS sequence) | XM_020546678.1 , XM_020546678.2 | |
Accession Version | XM_020546678.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2580bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100194408 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTTTAT CCAATCACCA TGACCGCACA ATTACTTATC AAATAGTTTC ATGGGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020402267.1 |
CDS | 669..3248 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTTTAT CCAATCACCA TGACCGCACA ATTACTTATC AAATAGTTTC ATGGGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa54450 | |
Clone ID Related Accession (Same CDS sequence) | XM_020546678.1 , XM_020546678.2 | |
Accession Version | XM_020546678.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2580bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100194408 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_020546678.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTTTAT CCAATCACCA TGACCGCACA ATTACTTATC AAATAGTTTC ATGGGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020402267.1 |
CDS | 666..3245 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTTTAT CCAATCACCA TGACCGCACA ATTACTTATC AAATAGTTTC ATGGGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Insights into corn genes derived from large-scale cDNA sequencing. |