Gene Symbol | TRO |
Entrez Gene ID | 396561 |
Full Name | trophinin |
Synonyms | TROP |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
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ORF » Species Summary » Sus scrofa » TRO cDNA ORF clone
Gene Symbol | TRO |
Entrez Gene ID | 396561 |
Full Name | trophinin |
Synonyms | TROP |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_021079491.1 | XP_020935150.1 | trophinin isoform X3 |
XM_021079490.1 | XP_020935149.1 | trophinin isoform X2 |
XM_013986194.2 | XP_013841648.1 | trophinin isoform X4 |
NM_001375395.1 | NP_001362324.1 | trophinin isoform 2 |
NM_001375396.1 | NP_001362325.1 | trophinin isoform 3 |
XM_003484114.2 | XP_003484162.2 | trophinin isoform X1 |
XM_013986192.2 | XP_013841646.1 | trophinin isoform X1 |
NM_213741.2 | NP_998906.1 | trophinin |
NM_213741.3 | NP_998906.2 | trophinin isoform 1 |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
Trophinin is expressed in the porcine endometrium during the estrous cycle.
Nakano S, Kishi H, Ogawa H, Yasue H, Okano A, Okuda K
The Journal of reproduction and development49(2)127-34(2003 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following TRO gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the TRO cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe01387 | |
Clone ID Related Accession (Same CDS sequence) | NM_213741.2 | |
Accession Version | NM_213741.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1767bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494777600000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB081619.1. On Aug 31, 2012 this sequence version replaced NM_213741.1. ##Evidence-Data-START## Transcript is intronless :: AB081619.1 [ECO:0000345] ##Evidence-Data-END## |
1 | ATGGATATCG ACTGCCTAAC AAGGGAAGAG TTAGGCGATG ATGCTCAGGC CTGGAGCAGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_998906.1 |
CDS | 9..1775 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGATATCG ACTGCCTAAC AAGGGAAGAG TTAGGCGATG ATGCTCAGGC CTGGAGCAGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45643 | |
Clone ID Related Accession (Same CDS sequence) | XM_013986194.2 , NM_001375396.1 | |
Accession Version | NM_001375396.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2622bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1571846400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000115.1. On Oct 25, 2019 this sequence version replaced XM_013986194.2. Transcript Variant: This variant (3) lacks an exon in the 5' coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 3, which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: SRR5275318.263827.1, SRR5012866.123788.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886114, SAMEA103886116 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGTACAA GTATCTGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001362325.1 |
CDS | 2842..5463 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGTACAA GTATCTGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe226848 | |
Clone ID Related Accession (Same CDS sequence) | XM_021079491.1 | |
Accession Version | XM_021079491.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2715bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010461.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGTTGC TGCTGCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020935150.1 |
CDS | 2842..5556 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGTTGC TGCTGCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe26120 | |
Clone ID Related Accession (Same CDS sequence) | XM_003484114.2 | |
Accession Version | XM_003484114.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2838bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1441814400000 | |
Organism | Sus scrofa(Pig) | |
Product | trophinin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612796.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 26, 2013 this sequence version replaced XM_003484114.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCACAA ACCAAGCCCT AGCAGCAACC CTCAGGGTCA AGAGAGGGTT CAGGGCTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_003484162.2 |
CDS | 23..2860 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGTCACAA ACCAAGCCCT AGCAGCAACC CTCAGGGTCA AGAGAGGGTT CAGGGCTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45643 | |
Clone ID Related Accession (Same CDS sequence) | XM_013986194.2 , NM_001375396.1 | |
Accession Version | XM_013986194.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2622bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010461.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_013986194.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGTACAA GTATCTGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_013841648.1 |
CDS | 2842..5463 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGTACAA GTATCTGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45641 | |
Clone ID Related Accession (Same CDS sequence) | XM_013986192.2 , NM_213741.3 | |
Accession Version | NM_213741.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3777bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1571846400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000115.1. On or before Oct 25, 2019 this sequence version replaced XM_013986192.2, NM_213741.2. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: SRR5012866.261732.1, SRR5012866.54294.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886114, SAMEA103886116 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGGCCC TCTGCCTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_998906.2 |
CDS | 2842..6618 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGGCCC TCTGCCTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45642 | |
Clone ID Related Accession (Same CDS sequence) | XM_021079490.1 , NM_001375395.1 | |
Accession Version | NM_001375395.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3645bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1571846400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000115.1. On Oct 25, 2019 this sequence version replaced XM_021079490.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and uses a downstream start codon compared to variant 1. It encodes isoform 2 which has a shorter N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: SRR5275318.310995.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886116, SAMEA103886122 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCATACCC TCTTGGCTGC AACAAAGGAC CCCCTGGCCA TGGACCCACC AGTTGCCAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001362324.1 |
CDS | 2928..6572 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCATACCC TCTTGGCTGC AACAAAGGAC CCCCTGGCCA TGGACCCACC AGTTGCCAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45641 | |
Clone ID Related Accession (Same CDS sequence) | XM_013986192.2 , NM_213741.3 | |
Accession Version | XM_013986192.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3777bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010461.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_013986192.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGGCCC TCTGCCTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_013841646.1 |
CDS | 2842..6618 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGATAGGA GAAATGACTC CGATTGTAAG ATGCCCCTGT TCCAGGGCCC TCTGCCTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe45642 | |
Clone ID Related Accession (Same CDS sequence) | XM_021079490.1 , NM_001375395.1 | |
Accession Version | XM_021079490.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3645bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | trophinin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010461.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCATACCC TCTTGGCTGC AACAAAGGAC CCCCTGGCCA TGGACCCACC AGTTGCCAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020935149.1 |
CDS | 2928..6572 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCATACCC TCTTGGCTGC AACAAAGGAC CCCCTGGCCA TGGACCCACC AGTTGCCAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |
Trophinin is expressed in the porcine endometrium during the estrous cycle. |