Gene Symbol | ppara |
Entrez Gene ID | 100304458 |
Full Name | peroxisome proliferator activated receptor alpha |
Synonyms | ppara2 |
Gene Type | protein-coding |
Organism | Oryzias latipes(Japanese medaka) |
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ORF » Species Summary » Oryzias latipes » ppara cDNA ORF clone
Gene Symbol | ppara |
Entrez Gene ID | 100304458 |
Full Name | peroxisome proliferator activated receptor alpha |
Synonyms | ppara2 |
Gene Type | protein-coding |
Organism | Oryzias latipes(Japanese medaka) |
mRNA | Protein | Name |
---|---|---|
XM_020713989.2 | XP_020569648.1 | peroxisome proliferator-activated receptor alpha isoform X2 |
NM_001164875.1 | NP_001158347.1 | peroxisome proliferator-activated receptor alpha |
XM_020713987.1 | XP_020569646.1 | peroxisome proliferator-activated receptor alpha isoform X1 |
XM_011490870.2 | XP_011489172.1 | peroxisome proliferator-activated receptor alpha isoform X2 |
XM_020713987.2 | XP_020569646.1 | peroxisome proliferator-activated receptor alpha isoform X1 |
XM_020713988.1 | XP_020569647.1 | peroxisome proliferator-activated receptor alpha isoform X2 |
XM_020713989.1 | XP_020569648.1 | peroxisome proliferator-activated receptor alpha isoform X2 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following ppara gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ppara cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OJa20388 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164875.1 | |
Accession Version | NM_001164875.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1501948800000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB469412.1. ##Evidence-Data-START## Transcript exon combination :: AB469412.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00029877, SAMD00029878 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001158347.1 |
CDS | 20..1462 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa21262 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713989.2 , XM_011490870.2 , XM_020713988.1 , XM_020713989.1 | |
Accession Version | XM_020713989.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518537600000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 15, 2018 this sequence version replaced XM_020713989.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020569648.1 |
CDS | 779..2221 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa21262 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713989.2 , XM_011490870.2 , XM_020713988.1 , XM_020713989.1 | |
Accession Version | XM_011490870.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518537600000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 7, 2017 this sequence version replaced XM_011490870.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011489172.1 |
CDS | 519..1961 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa21262 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713989.2 , XM_011490870.2 , XM_020713988.1 , XM_020713989.1 | |
Accession Version | XM_020713988.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518537600000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020569647.1 |
CDS | 646..2088 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa21262 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713989.2 , XM_011490870.2 , XM_020713988.1 , XM_020713989.1 | |
Accession Version | XM_020713989.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1491408000000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryzias latipes Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020569648.1 |
CDS | 778..2220 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGGCGG AACTGTACAG CCCCCCGTCC CCACTGGGAG ATTCCCTCCT GGACAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa76055 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713987.1 , XM_020713987.2 | |
Accession Version | XM_020713987.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1629bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1491408000000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryzias latipes Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTCCAT CAGTTAAACG GCAGAGATTT ACTCCGGATA GGCGATTACC CCGGTGTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020569646.1 |
CDS | 436..2064 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTCCAT CAGTTAAACG GCAGAGATTT ACTCCGGATA GGCGATTACC CCGGTGTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OJa76055 | |
Clone ID Related Accession (Same CDS sequence) | XM_020713987.1 , XM_020713987.2 | |
Accession Version | XM_020713987.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1629bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518537600000 | |
Organism | Oryzias latipes(Japanese medaka) | |
Product | peroxisome proliferator-activated receptor alpha isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019881.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 15, 2018 this sequence version replaced XM_020713987.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTCCAT CAGTTAAACG GCAGAGATTT ACTCCGGATA GGCGATTACC CCGGTGTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020569646.1 |
CDS | 673..2301 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTCCAT CAGTTAAACG GCAGAGATTT ACTCCGGATA GGCGATTACC CCGGTGTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |