Dpse\GA10681 cDNA ORF clone, Drosophila pseudoobscura pseudoobscura

Gene
Clones
gRNAs

Summary

Gene Symbol	Dpse\GA10681
Entrez Gene ID	4813120
Full Name	GA10681 gene product from transcript GA10681-RA
Synonyms	GA10681,dpse_GLEANR_12968
Gene Type	protein-coding
Organism	Drosophila pseudoobscura pseudoobscura

mRNA and Protein(s)

mRNA	Protein	Name
XM_001353379.3	XP_001353415.1	uncharacterized protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA
PloS one7(11)e47768(2012)

Evolution of genes and genomes on the Drosophila phylogeny.
, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I
Nature450(7167)203-18(2007 Nov)

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA
Genome research15(1)1-18(2005 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Dpse\GA10681 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Dpse\GA10681 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODe08250	XM_001353379.3 Latest version!	Drosophila pseudoobscura pseudoobscura uncharacterized protein (Dpse\GA10681), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$727.30 $1039.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Dpse\GA10681 ( XM_001353379.3 ) cDNA ORF clone, Drosophila pseudoobscura pseudoobscura -> XP_001353415.1 Drosophila pseudoobscura pseudoobscura uncharacterized protein (Dpse\GA10681), mRNA.

Price & Availability↑

CloneID	ODe08250
Clone ID Related Accession (Same CDS sequence)	XM_001353379.3
Accession Version	XM_001353379.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 4383bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1450627200000
Organism	Drosophila pseudoobscura pseudoobscura
Product	uncharacterized protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_001589955). On Dec 22, 2015 this sequence version replaced XM_001353379.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 3.03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCGTTAC TCTTCCGACG CATGTCAATG CTTTCAAATA TTATCCTTAT ATATATTTTT 
CTTTGCACAA TATTTGTGCA TGGATATAAA AAGCAAGAAT GGGCCGAAAT CGGAAGGAAC 
TTCTCCTTGG AATGCACGAC GGAGGATGAA AAAGCCACCT GGATGTTCGG TAACAAGACT 
ATTGATGAAA AGAACACAAG ATTGAAAGTC CAAACGATGC CCAACGTAAA TGTTGGCGAA 
ACGAACAGGA CCCACGCTCT TGTCAGTAAA CTATTTTTAG CTGATGTGAA TATATCGGAC 
GCCGGCAACT ACACTTGCAA ACATGCGGCG ACCAATGATT CCACCGAATT TAATGTGCAG 
ACATACCTGC CATCGAAGAT CGTGGAGAGC ACGGCCGATA AAATAAGGAG AAAGATCGGG 
CAGGACGTGG TATTGTTTTG TTTGGTCGAA GTCTATCCGC AAAACGCAAC GATCCACAAG 
AATCTCAAGT GGCTGAAGGA CGGCAGCGCG TTTCCATTCA TGGACACCTT CTCCTCGACT 
GCCAAGCTGA ATGAGACGCA TTTGAACTTC ACCCTGGAGT TCACGGAGGT CTACAAGAAG 
GAGAACGGCA CGTACAAGTG TGTGGTGTAC GACAGTGCTG GCACCGAAGG AACTTCCAAG 
GAAATAAACC TGTTCGTGAT GGAGGTGCCA CAAGTGAGCA TTGAGTTCGC CAAGGCTGTG 
GGTGCGAGCA AGATATTCCT CAATTGGACC GTAAACGACG GCAACGATCC CGTCCAGAAG 
TATTTCATTT CGTTCTCCCA GCAAGGAACG CCCACGTACA CGTACTACAA GGATATCATT 
AATGGGAACA ACACGTCGTA CATTTTGGAA TCATTCCTGC CAAACACAAC CTATTCCCTG 
CGAATCCTGG GCAAAAACTC GATCGGCGAC GGAGCACCCA ACCAGTATCC CGTGGGCATA 
ACAACCCTAT CTTTCGATCC CATATTCATT CCCAAGGTGG AAACGACTGG GAGCACAGCG 
TCGACGATAA CCATTGGCTG GAGTCCCCCG CCCCAGGACA TAATCGAATA CATACAGTAC 
TACGAGCTGA TTGTCTCCGA GTCGGGAGAG GTGCCCAAAC TGATCGAGGA GACGATTCAC 
CAGCAAAACT CCAGAAACCT GCCATACATG TTCGACAATC TGAAGACGGC CACAGAGTAC 
GAGTTCAGAG TGCGGGCCTG CAGCGATCTA ACGAAGACCT GTGGTCCCTG GTCGGATGTC 
GTGAATGGCA CCACCATGGA CGGTGTGTCG ACAAAGCCCA CAAATCTGAC CATCAACTGC 
CACCATCACA ACAATTCCAG ACTCAACTCC ATTTCGATAA GCTGGAACTA TCCCAAGGTG 
CCAAACGGGA AGATCATTTC GTATTTGATC ACCCTGGAGG GCAACTACAG GTACACGCTC 
GAGAACAATA TATTCAACGA GAAATGGGGA CCAAAGATCC GACGAGTGGA TGAGCCCCAC 
CACAAGACCA CCTATGACGG CGTCAGCCCA AACACAAACT ACTCGGTGAC CGTTTCGGCC 
ATAACGCGCC ACAAGAAGAA CGGGGAGCTC GCGGGCGGGC ACTGTGTGAT GCCCGTGTCC 
ACGCCCGATG TCGTTGGCCG CACTATGTGG TCGAAGATCA AACATGGCTC GAAATATCTT 
CTCAAACTGT ATCTGCCCAA AATCAGCGAA CGAAACGGGC CCATATGCTG CTACCGATTA 
TATCTGGTGA AAATAACCAA TGCCAACAAG GAACTGCCAG CGCCAGACAA ACTAAACATC 
GACACATATC ACCAGGTGCA CAGCGAGAAC GCCACCAAGG CCTATGCCTA TGTGGCGGAG 
ATGATCAGTA GCAAGTACTT CAAGCCGGAG ATCTTTCTGG GCGATGGCAA TCGATTTGTG 
GAGAACGCCG AGCTAATGGA CAACGACGAG ATATGCCGCC AGTGCTTGGA GGGCACGGCG 
TTCCTTAGAA AGTCTGAGCT GCCACAGAAA ACAGCCATGG GCTCCCTCTC ACATCTGGAA 
TTTCGCATTT CATCGCAGAA AGAGCAACTG ATTAAGGCGG GAAATCTAAC AGAAAACGCC 
TTTAAAATAT TGGAAAACAA AAAGCGAGTC AGACGCAATA CAATTAATCC GAAAAGCGAA 
CAAAACTCCA ACTCCAACTC CAGCTCCAAT CCAACCCAAG ATGTCCTACC CACTCCCGCT 
GCTGTCCATG AGATATGGGA CGGCGAGATA GATATTAATG CCAATTATAC AGGATTTCTC 
GAAATAGTTG TGCGCGACGT GAATGGAGCT CTCCTGGCAT ACAGCGATTA TTTTGATGTA 
ATCACGCCAG CCACAGAAGC GGAGCCAAAT CATTCGCTCA AGGATATGGA CTACTATTTG 
AATATTGGCA TCAAAGCGGG TGCCGTGCTA TTTGGCATAA TCATTGTCTT CTTTGTACTA 
TGGATTTTCC ATCACAACAA GACCAAGAAC GCGATGCCTG GCGAAGATGC ATTAACACTG 
AGAGATTCAT TGAGGGCCCT TTTCGGACGT CGAAGCCACA ATCACAGTCA CTTTATTACG 
TCTGGAAACC ACAAAGGCTT CGATACTGGG CCAATCCAAA GATTTGAACT GGAAAATGCC 
TATAAAAACC GTCACAAGGA CACGGACTAT GGATTCCTTA GAGAATATGA AATGCTGCCG 
AATCGCTTTA GCGACCGAAC AACGAAAAAT AGCGACATTA AGGAAAACGC CTGCAAAAAT 
AGGTACCCCG ATATTAAGGC CTACGACCAA ACGCGCGTGA AACTGGCGAC TGCGAACGGA 
CTGCAATCAA CCGACTATAT TAATGCGAAC TTCGTCATTG GCTACAAGGA GCGGAAGAAG 
TTTATCTGCG CACAGGGTCC GATGGAGAGT ACCATCGACG ACTTCTGGCG CATGATATGG 
GAACAGCATC TGGAGATAAT TGTGATGCTC ACCAATTTGG AGGAATACAA TAAGGCGAAG 
TGCGCTAAAT ATTGGCCTGA AAAAGTATTT GATACTAAGC AGTTTGGAGA TATTTTAGTG 
AAATTCACAC AAGAACGAAA GACTGGCGAT TATGTTGTGC GAACGTTGAA TGTTTCGAAG 
AGCAACCTTA TTGGCGATGA GGAGGATCGC AGAGAGATTA CCCAATACCA CTATTTAACG 
TGGAAGGATT TTATGGCGCC GGAACACCCG CACGGCATTA TCAAGTTTAT ACGACAAATC 
AATTCCGTTT ACTCCCTTCA ACGAGGCCCC ATTTTAGTGC ATTGCAGTGC CGGTGTGGGT 
AGAACCGGTA CGCTAGTCGC TTTAGATTCT CTTATACAAC AATTGGAGGA AGAAGACTCG 
GTTTCGATAT ACAACACCGT ATGTGACTTA CGACATCAGC GCAATTTTTT AGTTCAGTCT 
CTGAAACAAT ACATTTTTCT ATACCGCGCT TTGCTAGACA CTGGAACTTT TGGAAATACG 
GATTTATGTA TTAATTCAAT GGCATCAGCC ATTGAGTCAC TCAAGCGAAA GCCGAACGAG 
GGTAAATGCA AATTAGAAAT GGAATTCGAG AAACTATTAA TCACCATGGA TGAGGTAAAC 
AAATCATGCT CTGTGGGCGA AAACGAAGAA AACAATTCAA AGAACAGAAG CCTGGAGGTC 
ATTCCATACG ATCGCAATAG AGTAATATTG ACTCCGCTTC CTATGAGAGA CAACTCGACT 
TATATTAACG CCTCGTTTAT TGAGGGCTAC GACAATAGTG AAACCTTCAT TATTGCCCAG 
GATCCACTCG AAAACACCGT TGGCGATTTC TGGAGAATGA TCTCCGAGCA AAGTATTTCC 
ACGCTGGTAA TGATATCTGA AATTGGAGAC GGTCAGAGGA AATGTCCACG TTATTGGGCC 
GATGATGAAA TCCAATATGA CCATATACTT GTGAAATATT TGCACAGCGA GAACTGTCCC 
TACTATACGC GGCGGGAGTT CTATGTTACA AACTGCAAAA TCGACGATAC ATTGAAAGTG 
ACACAGTTTC AGTACAACGG TTGGCCAACC GTCGAGGGGG AAGTTCCTGA AGTATGTCGA 
GGAATAATAG AACTTGTGGA TCAAGCATAC AACCATTACA AAAGCCATAA AAATATCGGT 
TGTCGATCGC CCCTTACAGT TCATTGCAGC CTCGGGACTG ATCGAAGTTC TATTTTCGTG 
GCCATGTGCA TTTTAGTCCA GCACCTTAGA TTAGAAAAAT CTGTTGACAT CTGTGCAACA 
ACAAGGAAAT TAAGATCTCA GCGACCGGGA CTTATCAACT CATACGCACA ATACGAGTTC 
CTACATCGCG CAATAATGAA TTATTCAGAC TTGCATCATT TATCGGAGTC GATAGAGGAT 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_001353415.1
CDS	184..4566
Translation	MALLFRRMSMLSNIILIYIFLCTIFVHGYKKQEWAEIGRNFSLECTTEDEKATWMFGNKTIDEKNTRLKVQTMPNVNVGETNRTHALVSKLFLADVNISDAGNYTCKHAATNDSTEFNVQTYLPSKIVESTADKIRRKIGQDVVLFCLVEVYPQNATIHKNLKWLKDGSAFPFMDTFSSTAKLNETHLNFTLEFTEVYKKENGTYKCVVYDSAGTEGTSKEINLFVMEVPQVSIEFAKAVGASKIFLNWTVNDGNDPVQKYFISFSQQGTPTYTYYKDIINGNNTSYILESFLPNTTYSLRILGKNSIGDGAPNQYPVGITTLSFDPIFIPKVETTGSTASTITIGWSPPPQDIIEYIQYYELIVSESGEVPKLIEETIHQQNSRNLPYMFDNLKTATEYEFRVRACSDLTKTCGPWSDVVNGTTMDGVSTKPTNLTINCHHHNNSRLNSISISWNYPKVPNGKIISYLITLEGNYRYTLENNIFNEKWGPKIRRVDEPHHKTTYDGVSPNTNYSVTVSAITRHKKNGELAGGHCVMPVSTPDVVGRTMWSKIKHGSKYLLKLYLPKISERNGPICCYRLYLVKITNANKELPAPDKLNIDTYHQVHSENATKAYAYVAEMISSKYFKPEIFLGDGNRFVENAELMDNDEICRQCLEGTAFLRKSELPQKTAMGSLSHLEFRISSQKEQLIKAGNLTENAFKILENKKRVRRNTINPKSEQNSNSNSSSNPTQDVLPTPAAVHEIWDGEIDINANYTGFLEIVVRDVNGALLAYSDYFDVITPATEAEPNHSLKDMDYYLNIGIKAGAVLFGIIIVFFVLWIFHHNKTKNAMPGEDALTLRDSLRALFGRRSHNHSHFITSGNHKGFDTGPIQRFELENAYKNRHKDTDYGFLREYEMLPNRFSDRTTKNSDIKENACKNRYPDIKAYDQTRVKLATANGLQSTDYINANFVIGYKERKKFICAQGPMESTIDDFWRMIWEQHLEIIVMLTNLEEYNKAKCAKYWPEKVFDTKQFGDILVKFTQERKTGDYVVRTLNVSKSNLIGDEEDRREITQYHYLTWKDFMAPEHPHGIIKFIRQINSVYSLQRGPILVHCSAGVGRTGTLVALDSLIQQLEEEDSVSIYNTVCDLRHQRNFLVQSLKQYIFLYRALLDTGTFGNTDLCINSMASAIESLKRKPNEGKCKLEMEFEKLLITMDEVNKSCSVGENEENNSKNRSLEVIPYDRNRVILTPLPMRDNSTYINASFIEGYDNSETFIIAQDPLENTVGDFWRMISEQSISTLVMISEIGDGQRKCPRYWADDEIQYDHILVKYLHSENCPYYTRREFYVTNCKIDDTLKVTQFQYNGWPTVEGEVPEVCRGIIELVDQAYNHYKSHKNIGCRSPLTVHCSLGTDRSSIFVAMCILVQHLRLEKSVDICATTRKLRSQRPGLINSYAQYEFLHRAIMNYSDLHHLSESIED

Target ORF information:

RefSeq Version	XM_001353379.3
Organism	Drosophila pseudoobscura pseudoobscura
Definition	Drosophila pseudoobscura pseudoobscura uncharacterized protein (Dpse\GA10681), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_001353379.3

ORF Insert Sequence:

ATGGCGTTAC TCTTCCGACG CATGTCAATG CTTTCAAATA TTATCCTTAT ATATATTTTT 
CTTTGCACAA TATTTGTGCA TGGATATAAA AAGCAAGAAT GGGCCGAAAT CGGAAGGAAC 
TTCTCCTTGG AATGCACGAC GGAGGATGAA AAAGCCACCT GGATGTTCGG TAACAAGACT 
ATTGATGAAA AGAACACAAG ATTGAAAGTC CAAACGATGC CCAACGTAAA TGTTGGCGAA 
ACGAACAGGA CCCACGCTCT TGTCAGTAAA CTATTTTTAG CTGATGTGAA TATATCGGAC 
GCCGGCAACT ACACTTGCAA ACATGCGGCG ACCAATGATT CCACCGAATT TAATGTGCAG 
ACATACCTGC CATCGAAGAT CGTGGAGAGC ACGGCCGATA AAATAAGGAG AAAGATCGGG 
CAGGACGTGG TATTGTTTTG TTTGGTCGAA GTCTATCCGC AAAACGCAAC GATCCACAAG 
AATCTCAAGT GGCTGAAGGA CGGCAGCGCG TTTCCATTCA TGGACACCTT CTCCTCGACT 
GCCAAGCTGA ATGAGACGCA TTTGAACTTC ACCCTGGAGT TCACGGAGGT CTACAAGAAG 
GAGAACGGCA CGTACAAGTG TGTGGTGTAC GACAGTGCTG GCACCGAAGG AACTTCCAAG 
GAAATAAACC TGTTCGTGAT GGAGGTGCCA CAAGTGAGCA TTGAGTTCGC CAAGGCTGTG 
GGTGCGAGCA AGATATTCCT CAATTGGACC GTAAACGACG GCAACGATCC CGTCCAGAAG 
TATTTCATTT CGTTCTCCCA GCAAGGAACG CCCACGTACA CGTACTACAA GGATATCATT 
AATGGGAACA ACACGTCGTA CATTTTGGAA TCATTCCTGC CAAACACAAC CTATTCCCTG 
CGAATCCTGG GCAAAAACTC GATCGGCGAC GGAGCACCCA ACCAGTATCC CGTGGGCATA 
ACAACCCTAT CTTTCGATCC CATATTCATT CCCAAGGTGG AAACGACTGG GAGCACAGCG 
TCGACGATAA CCATTGGCTG GAGTCCCCCG CCCCAGGACA TAATCGAATA CATACAGTAC 
TACGAGCTGA TTGTCTCCGA GTCGGGAGAG GTGCCCAAAC TGATCGAGGA GACGATTCAC 
CAGCAAAACT CCAGAAACCT GCCATACATG TTCGACAATC TGAAGACGGC CACAGAGTAC 
GAGTTCAGAG TGCGGGCCTG CAGCGATCTA ACGAAGACCT GTGGTCCCTG GTCGGATGTC 
GTGAATGGCA CCACCATGGA CGGTGTGTCG ACAAAGCCCA CAAATCTGAC CATCAACTGC 
CACCATCACA ACAATTCCAG ACTCAACTCC ATTTCGATAA GCTGGAACTA TCCCAAGGTG 
CCAAACGGGA AGATCATTTC GTATTTGATC ACCCTGGAGG GCAACTACAG GTACACGCTC 
GAGAACAATA TATTCAACGA GAAATGGGGA CCAAAGATCC GACGAGTGGA TGAGCCCCAC 
CACAAGACCA CCTATGACGG CGTCAGCCCA AACACAAACT ACTCGGTGAC CGTTTCGGCC 
ATAACGCGCC ACAAGAAGAA CGGGGAGCTC GCGGGCGGGC ACTGTGTGAT GCCCGTGTCC 
ACGCCCGATG TCGTTGGCCG CACTATGTGG TCGAAGATCA AACATGGCTC GAAATATCTT 
CTCAAACTGT ATCTGCCCAA AATCAGCGAA CGAAACGGGC CCATATGCTG CTACCGATTA 
TATCTGGTGA AAATAACCAA TGCCAACAAG GAACTGCCAG CGCCAGACAA ACTAAACATC 
GACACATATC ACCAGGTGCA CAGCGAGAAC GCCACCAAGG CCTATGCCTA TGTGGCGGAG 
ATGATCAGTA GCAAGTACTT CAAGCCGGAG ATCTTTCTGG GCGATGGCAA TCGATTTGTG 
GAGAACGCCG AGCTAATGGA CAACGACGAG ATATGCCGCC AGTGCTTGGA GGGCACGGCG 
TTCCTTAGAA AGTCTGAGCT GCCACAGAAA ACAGCCATGG GCTCCCTCTC ACATCTGGAA 
TTTCGCATTT CATCGCAGAA AGAGCAACTG ATTAAGGCGG GAAATCTAAC AGAAAACGCC 
TTTAAAATAT TGGAAAACAA AAAGCGAGTC AGACGCAATA CAATTAATCC GAAAAGCGAA 
CAAAACTCCA ACTCCAACTC CAGCTCCAAT CCAACCCAAG ATGTCCTACC CACTCCCGCT 
GCTGTCCATG AGATATGGGA CGGCGAGATA GATATTAATG CCAATTATAC AGGATTTCTC 
GAAATAGTTG TGCGCGACGT GAATGGAGCT CTCCTGGCAT ACAGCGATTA TTTTGATGTA 
ATCACGCCAG CCACAGAAGC GGAGCCAAAT CATTCGCTCA AGGATATGGA CTACTATTTG 
AATATTGGCA TCAAAGCGGG TGCCGTGCTA TTTGGCATAA TCATTGTCTT CTTTGTACTA 
TGGATTTTCC ATCACAACAA GACCAAGAAC GCGATGCCTG GCGAAGATGC ATTAACACTG 
AGAGATTCAT TGAGGGCCCT TTTCGGACGT CGAAGCCACA ATCACAGTCA CTTTATTACG 
TCTGGAAACC ACAAAGGCTT CGATACTGGG CCAATCCAAA GATTTGAACT GGAAAATGCC 
TATAAAAACC GTCACAAGGA CACGGACTAT GGATTCCTTA GAGAATATGA AATGCTGCCG 
AATCGCTTTA GCGACCGAAC AACGAAAAAT AGCGACATTA AGGAAAACGC CTGCAAAAAT 
AGGTACCCCG ATATTAAGGC CTACGACCAA ACGCGCGTGA AACTGGCGAC TGCGAACGGA 
CTGCAATCAA CCGACTATAT TAATGCGAAC TTCGTCATTG GCTACAAGGA GCGGAAGAAG 
TTTATCTGCG CACAGGGTCC GATGGAGAGT ACCATCGACG ACTTCTGGCG CATGATATGG 
GAACAGCATC TGGAGATAAT TGTGATGCTC ACCAATTTGG AGGAATACAA TAAGGCGAAG 
TGCGCTAAAT ATTGGCCTGA AAAAGTATTT GATACTAAGC AGTTTGGAGA TATTTTAGTG 
AAATTCACAC AAGAACGAAA GACTGGCGAT TATGTTGTGC GAACGTTGAA TGTTTCGAAG 
AGCAACCTTA TTGGCGATGA GGAGGATCGC AGAGAGATTA CCCAATACCA CTATTTAACG 
TGGAAGGATT TTATGGCGCC GGAACACCCG CACGGCATTA TCAAGTTTAT ACGACAAATC 
AATTCCGTTT ACTCCCTTCA ACGAGGCCCC ATTTTAGTGC ATTGCAGTGC CGGTGTGGGT 
AGAACCGGTA CGCTAGTCGC TTTAGATTCT CTTATACAAC AATTGGAGGA AGAAGACTCG 
GTTTCGATAT ACAACACCGT ATGTGACTTA CGACATCAGC GCAATTTTTT AGTTCAGTCT 
CTGAAACAAT ACATTTTTCT ATACCGCGCT TTGCTAGACA CTGGAACTTT TGGAAATACG 
GATTTATGTA TTAATTCAAT GGCATCAGCC ATTGAGTCAC TCAAGCGAAA GCCGAACGAG 
GGTAAATGCA AATTAGAAAT GGAATTCGAG AAACTATTAA TCACCATGGA TGAGGTAAAC 
AAATCATGCT CTGTGGGCGA AAACGAAGAA AACAATTCAA AGAACAGAAG CCTGGAGGTC 
ATTCCATACG ATCGCAATAG AGTAATATTG ACTCCGCTTC CTATGAGAGA CAACTCGACT 
TATATTAACG CCTCGTTTAT TGAGGGCTAC GACAATAGTG AAACCTTCAT TATTGCCCAG 
GATCCACTCG AAAACACCGT TGGCGATTTC TGGAGAATGA TCTCCGAGCA AAGTATTTCC 
ACGCTGGTAA TGATATCTGA AATTGGAGAC GGTCAGAGGA AATGTCCACG TTATTGGGCC 
GATGATGAAA TCCAATATGA CCATATACTT GTGAAATATT TGCACAGCGA GAACTGTCCC 
TACTATACGC GGCGGGAGTT CTATGTTACA AACTGCAAAA TCGACGATAC ATTGAAAGTG 
ACACAGTTTC AGTACAACGG TTGGCCAACC GTCGAGGGGG AAGTTCCTGA AGTATGTCGA 
GGAATAATAG AACTTGTGGA TCAAGCATAC AACCATTACA AAAGCCATAA AAATATCGGT 
TGTCGATCGC CCCTTACAGT TCATTGCAGC CTCGGGACTG ATCGAAGTTC TATTTTCGTG 
GCCATGTGCA TTTTAGTCCA GCACCTTAGA TTAGAAAAAT CTGTTGACAT CTGTGCAACA 
ACAAGGAAAT TAAGATCTCA GCGACCGGGA CTTATCAACT CATACGCACA ATACGAGTTC 
CTACATCGCG CAATAATGAA TTATTCAGAC TTGCATCATT TATCGGAGTC GATAGAGGAT 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
PloS one7(11)e47768(2012)
English AC,Richards S,Han Y,Wang M,Vee V,Qu J,Qin X,Muzny DM,Reid JG,Worley KC,Gibbs RA

Evolution of genes and genomes on the Drosophila phylogeny.
Nature450(7167)203-18(2007 Nov)
,Clark AG,Eisen MB,Smith DR,Bergman CM,Oliver B,Markow TA,Kaufman TC,Kellis M,Gelbart W,Iyer VN,Pollard DA,Sackton TB,Larracuente AM,Singh ND,Abad JP,Abt DN,Adryan B,Aguade M,Akashi H,Anderson WW,Aquadro CF,Ardell DH,Arguello R,Artieri CG,Barbash DA,Barker D,Barsanti P,Batterham P,Batzoglou S,Begun D,Bhutkar A,Blanco E,Bosak SA,Bradley RK,Brand AD,Brent MR,Brooks AN,Brown RH,Butlin RK,Caggese C,Calvi BR,Bernardo de Carvalho A,Caspi A,Castrezana S,Celniker SE,Chang JL,Chapple C,Chatterji S,Chinwalla A,Civetta A,Clifton SW,Comeron JM,Costello JC,Coyne JA,Daub J,David RG,Delcher AL,Delehaunty K,Do CB,Ebling H,Edwards K,Eickbush T,Evans JD,Filipski A,Findeiss S,Freyhult E,Fulton L,Fulton R,Garcia AC,Gardiner A,Garfield DA,Garvin BE,Gibson G,Gilbert D,Gnerre S,Godfrey J,Good R,Gotea V,Gravely B,Greenberg AJ,Griffiths-Jones S,Gross S,Guigo R,Gustafson EA,Haerty W,Hahn MW,Halligan DL,Halpern AL,Halter GM,Han MV,Heger A,Hillier L,Hinrichs AS,Holmes I,Hoskins RA,Hubisz MJ,Hultmark D,Huntley MA,Jaffe DB,Jagadeeshan S,Jeck WR,Johnson J,Jones CD,Jordan WC,Karpen GH,Kataoka E,Keightley PD,Kheradpour P,Kirkness EF,Koerich LB,Kristiansen K,Kudrna D,Kulathinal RJ,Kumar S,Kwok R,Lander E,Langley CH,Lapoint R,Lazzaro BP,Lee SJ,Levesque L,Li R,Lin CF,Lin MF,Lindblad-Toh K,Llopart A,Long M,Low L,Lozovsky E,Lu J,Luo M,Machado CA,Makalowski W,Marzo M,Matsuda M,Matzkin L,McAllister B,McBride CS,McKernan B,McKernan K,Mendez-Lago M,Minx P,Mollenhauer MU,Montooth K,Mount SM,Mu X,Myers E,Negre B,Newfeld S,Nielsen R,Noor MA,O'Grady P,Pachter L,Papaceit M,Parisi MJ,Parisi M,Parts L,Pedersen JS,Pesole G,Phillippy AM,Ponting CP,Pop M,Porcelli D,Powell JR,Prohaska S,Pruitt K,Puig M,Quesneville H,Ram KR,Rand D,Rasmussen MD,Reed LK,Reenan R,Reily A,Remington KA,Rieger TT,Ritchie MG,Robin C,Rogers YH,Rohde C,Rozas J,Rubenfield MJ,Ruiz A,Russo S,Salzberg SL,Sanchez-Gracia A,Saranga DJ,Sato H,Schaeffer SW,Schatz MC,Schlenke T,Schwartz R,Segarra C,Singh RS,Sirot L,Sirota M,Sisneros NB,Smith CD,Smith TF,Spieth J,Stage DE,Stark A,Stephan W,Strausberg RL,Strempel S,Sturgill D,Sutton G,Sutton GG,Tao W,Teichmann S,Tobari YN,Tomimura Y,Tsolas JM,Valente VL,Venter E,Venter JC,Vicario S,Vieira FG,Vilella AJ,Villasante A,Walenz B,Wang J,Wasserman M,Watts T,Wilson D,Wilson RK,Wing RA,Wolfner MF,Wong A,Wong GK,Wu CI,Wu G,Yamamoto D,Yang HP,Yang SP,Yorke JA,Yoshida K,Zdobnov E,Zhang P,Zhang Y,Zimin AV,Baldwin J,Abdouelleil A,Abdulkadir J,Abebe A,Abera B,Abreu J,Acer SC,Aftuck L,Alexander A,An P,Anderson E,Anderson S,Arachi H,Azer M,Bachantsang P,Barry A,Bayul T,Berlin A,Bessette D,Bloom T,Blye J,Boguslavskiy L,Bonnet C,Boukhgalter B,Bourzgui I,Brown A,Cahill P,Channer S,Cheshatsang Y,Chuda L,Citroen M,Collymore A,Cooke P,Costello M,D'Aco K,Daza R,De Haan G,DeGray S,DeMaso C,Dhargay N,Dooley K,Dooley E,Doricent M,Dorje P,Dorjee K,Dupes A,Elong R,Falk J,Farina A,Faro S,Ferguson D,Fisher S,Foley CD,Franke A,Friedrich D,Gadbois L,Gearin G,Gearin CR,Giannoukos G,Goode T,Graham J,Grandbois E,Grewal S,Gyaltsen K,Hafez N,Hagos B,Hall J,Henson C,Hollinger A,Honan T,Huard MD,Hughes L,Hurhula B,Husby ME,Kamat A,Kanga B,Kashin S,Khazanovich D,Kisner P,Lance K,Lara M,Lee W,Lennon N,Letendre F,LeVine R,Lipovsky A,Liu X,Liu J,Liu S,Lokyitsang T,Lokyitsang Y,Lubonja R,Lui A,MacDonald P,Magnisalis V,Maru K,Matthews C,McCusker W,McDonough S,Mehta T,Meldrim J,Meneus L,Mihai O,Mihalev A,Mihova T,Mittelman R,Mlenga V,Montmayeur A,Mulrain L,Navidi A,Naylor J,Negash T,Nguyen T,Nguyen N,Nicol R,Norbu C,Norbu N,Novod N,O'Neill B,Osman S,Markiewicz E,Oyono OL,Patti C,Phunkhang P,Pierre F,Priest M,Raghuraman S,Rege F,Reyes R,Rise C,Rogov P,Ross K,Ryan E,Settipalli S,Shea T,Sherpa N,Shi L,Shih D,Sparrow T,Spaulding J,Stalker J,Stange-Thomann N,Stavropoulos S,Stone C,Strader C,Tesfaye S,Thomson T,Thoulutsang Y,Thoulutsang D,Topham K,Topping I,Tsamla T,Vassiliev H,Vo A,Wangchuk T,Wangdi T,Weiand M,Wilkinson J,Wilson A,Yadav S,Young G,Yu Q,Zembek L,Zhong D,Zimmer A,Zwirko Z,Jaffe DB,Alvarez P,Brockman W,Butler J,Chin C,Gnerre S,Grabherr M,Kleber M,Mauceli E,MacCallum I

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Genome research15(1)1-18(2005 Jan)
Richards S,Liu Y,Bettencourt BR,Hradecky P,Letovsky S,Nielsen R,Thornton K,Hubisz MJ,Chen R,Meisel RP,Couronne O,Hua S,Smith MA,Zhang P,Liu J,Bussemaker HJ,van Batenburg MF,Howells SL,Scherer SE,Sodergren E,Matthews BB,Crosby MA,Schroeder AJ,Ortiz-Barrientos D,Rives CM,Metzker ML,Muzny DM,Scott G,Steffen D,Wheeler DA,Worley KC,Havlak P,Durbin KJ,Egan A,Gill R,Hume J,Morgan MB,Miner G,Hamilton C,Huang Y,Waldron L,Verduzco D,Clerc-Blankenburg KP,Dubchak I,Noor MA,Anderson W,White KP,Clark AG,Schaeffer SW,Gelbart W,Weinstock GM,Gibbs RA

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Dpse\GA10681 cDNA ORF clone, Drosophila pseudoobscura pseudoobscura

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