bop1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	bop1
Entrez Gene ID	777627
Full Name	block of proliferation 1
Synonyms	id:ibd1283,si:ch211-251g8.2,si:ch211-251g8.4,zgc:154135
General protein information	Preferred Names block of proliferation 1 Names ribosome biogenesis protein bop1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001077735.1	NP_001071203.1	ribosome biogenesis protein bop1

Pathways from BioSystems

Homologies

Rattus norvegicus (Norway rat)	Bop1	NP_001019421.1
Gallus gallus (chicken)	BOP1	XP_004950532.1
Anopheles gambiae (African malaria mosquito)	BOP1_ANOGA	XP_308633.4
Xenopus tropicalis (tropical clawed frog)	bop1	NP_001096309.1
Kluyveromyces lactis	KLLA0F26653g	XP_456266.1
Macaca mulatta (Rhesus monkey)	LOC714024	XP_002805572.1
Danio rerio (zebrafish)	bop1	NP_001071203.1
Caenorhabditis elegans (roundworm)	CELE_Y48B6A.1	NP_496956.1
Arabidopsis thaliana (thale cress)	AT2G40360	NP_181567.3
Eremothecium gossypii	AGOS_ABR101C	NP_983048.2
Neurospora crassa	NCU03321	XP_964498.1
Pan troglodytes (chimpanzee)	BOP1	XP_003312026.2
Canis lupus familiaris (dog)	BOP1	XP_003431868.2
Oryza sativa (rice)	Os07g0435400	NP_001059502.1
Schizosaccharomyces pombe (fission yeast)	SPBC4F6.13c	NP_596113.2
Homo sapiens (human)	BOP1	NP_056016.1
Saccharomyces cerevisiae (baker's yeast)	ERB1	NP_013764.1
Magnaporthe oryzae (rice blast fungus)	MGG_09313	XP_003709965.1
Bos taurus (cattle)	BOP1	XP_002692629.2
Mus musculus (house mouse)	Bop1	NP_038509.1
Drosophila melanogaster (fruit fly)	CG5033	NP_611270.1

Gene Ontology
Bibliography

Related articles in PubMed

Cross talk between TP53 and c-Myc in the pathophysiology of Diamond-Blackfan anemia: Evidence from RPL11-deficient in vivo and in vitro models.
Chakraborty A, Uechi T, Nakajima Y, Gazda HT, O'Donohue MF, Gleizes PE, Kenmochi N
Biochemical and biophysical research communications495(2)1839-1845(2018 01)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Hematopoietic gene expression profile in zebrafish kidney marrow.
Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT, Chen Z
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)

A gene expression screen in zebrafish embryogenesis.
Kudoh T, Tsang M, Hukriede NA, Chen X, Dedekian M, Clarke CJ, Kiang A, Schultz S, Epstein JA, Toyama R, Dawid IB
Genome research11(12)1979-87(2001 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following bop1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the bop1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa38178	NM_001077735.1 Latest version!	Danio rerio BOP1 ribosomal biogenesis factor (bop1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$391.30 $559.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

bop1 ( NM_001077735.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001071203.1 Danio rerio BOP1 ribosomal biogenesis factor (bop1), mRNA.

Price & Availability↑

CloneID	ODa38178
Clone ID Related Accession (Same CDS sequence)	NM_001077735.1
Accession Version	NM_001077735.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2334bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1577116800000
Organism	Danio rerio(zebrafish)
Product	ribosome biogenesis protein bop1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC125962.1. ##Evidence-Data-START## Transcript exon combination :: BC125962.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGAGCAAAT TAAAGAATAA GAAACGACAT TTAGAGGAGA ATGAAGAGGA ACAGTTGCCC 
ATCTTTGATA AGGACAGTGG TGAAGATGGT CATCTAGATG ATGGAGATGA GGATCCGGCT 
GATCTGTCAG ACAGTGAAGA GAGCGTTTTC TCTGGGCTTG AAGACTCGGG CAGTGATGAT 
GAGGATGATG ATGAAGATGA CGACGAAGAT GATGATGATA AGGATGGTTC TGAGGAAAAG 
AGCTCTGATG CAGAGGAAGA CAAAGCCGAT GATGATGATG GAGACCTCAA GCTTTCAGCC 
AAAGATGACG TCAAACCTCA GGTTGATAGC CAGAATTCAA AGGAGAAGAA GAAGAAGAAG 
AGAAAGGGTA AATCTGTGCT GAAGGATGGA GGAGAGGAGG ACGTTGCGTC GGGCAGAGAT 
GAGGCCCTGA AGATCACCTC TCAGGTGGAC GAATATGACC ACGACACATC AGATGAAGAG 
GACATTCGTA ACACGGTTGG GAACATCCCG ATGGAGTGGT ACAAGGATTA TCCTCACATC 
GGATACGACC TGGACGGAAA GAAGATCTTT AAACCGATCA GAAACAAAGA TGAGCTGGAC 
GAGTTTCTGG ACAAGATGGA GAATCCTGAT TACTGGCGAA CTGTCCAGGA CAAGATGACC 
GGCGCTGATA TCCGTCTGTC GGACGAGCAG GTGGATCTGG TCCACCGTCT GCAGCAGGGC 
AAATTCGGTG ACGTCAACTT CAACGAATAC GAGCCTGCAG TTGATTTCTT CTCCAATGAA 
GTGATGATCC ACCCCGTCAC CAACAGGCCT CAGGACAAAC GCAGCTTCAT TCCCTCGCTA 
ATCGAGAAAG AGAAGGTCGG GAAGTTGGTT CATGCCATTA AAATGGGCTG GATTAAGCCT 
CGCAGACCCA AGGAAACCAC GCCGCAGTAT TACGACCTCT GGGCCAAAGA AGACCCCAAC 
AGCATTCTGG GACGCCACAA GATGCACGTC CCAGCACCCA AGATGAAGCT TCCGGGACAT 
GAGGAGTCCT ACAACCCTCC TCCAGAATAC CTGCTGTCCG AGGAAGAGAG ACTGGCATGG 
GCTGCACAGG ACCCCGAGGA CAGAAAGCTG AGTTTCCTCC CGCAGAAGTT CTCGTGTCTG 
CGAGCCGTTC CTGCATTCTC ACGCTTCATT CACGAGCGCT TCGAGCGCTG CCTCGACCTC 
TACCTGTGTC CCAGACAGAG GAAGATGAGG GTGAACGTGA ACCCAGAAGA CCTGATTCCC 
AAACTTCCCA AGCCCAAAGA CCTGCAGCCG TTCCCCACCA CACAGTCTCT GGTGTATCGT 
GGTCACTCCA GTCTGGTCCG GAGCATCAGT GTCTCTCCCA GCGGTCAGTG GCTGGTGTCT 
GGCTCTGATG ACTGTACGGT GCGCTTCTGG GAGGTCAGCA CTGCACGCTG CCTGAAAACA 
GTGCAGGTAG GCGGAGCCGT GAAGGGCGTG GCCTGGAATC CCAATCCTTC CATCTGTTTG 
GTTGCTGTCA GCTATGAAGA CTCGGTGCTC CTGCTGAACC CTGCTCTGGG TGATCGGCTC 
CTCTGCACCG CTACAGATCA GCTCATCTCC TCCTACGCGG AGCCAGAGGA AGTGAAGGAG 
CAGCCGGTTC AGTGGCTCGT CTCAGAGGGC GAGGGTCACG AGCAGGGTCA CCGCCTCGTT 
CTCAAACACC CCAAGGCGGT GAGGCAGGTG ACGTGGCATG CTAAAGGAGA TTACCTGGCG 
TGTGTGCTGC CCGACAGCAG CAGCAGTGTT CAGGTGCTCA TCCACCAGGT GAGCAAGCGC 
AGGACGCAGA ACCCCTTCCG CAAGAGCAAG GGTCTGGTGC AGTGCGTCTC CTTCCACCCC 
GTCAGGCCCT ATTTCTTCGT GGCCACGCAG CGATACGTGC GCGTCTACAA CCTCATCAAG 
CAGGAGCTCA CCAAGAAGCT GATGGCCAAC TGCAAGTGGA TCTCCAGCAT GGCCATCCAT 
CCAGGAGGTG ACAATGTGAT ATGCGGCAGC TACGACTGTC GTCTGGCCTG GTTTGATCTG 
GATCTGTCCA CTAAACCGTA TAAAGTGCTC CGACATCATA AGAAGGCCCT GAGGAGCGTG 
TCCTTCCACA GCCACTACCC GCTGCTGGCA TCCGGCTCTG ACGACGGCAG TGTGATCGTC 
TGCCACGGCA TGGTCTACAA TGACCTGCTC CAGAATCCTC TGATTGTCCC GGTCAAGGTT 
TTGAAGGGTC ACAGCATCAC TCATGACCTC GGGGTCCTGG ACGTGACCTT TCACCCGACT 
CAACCCTGGG TGTTTTCCTC CGGGGCCGAC GCAACCATCC GACTCTACAC CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001071203.1
CDS	35..2368
Translation	MSKLKNKKRHLEENEEEQLPIFDKDSGEDGHLDDGDEDPADLSDSEESVFSGLEDSGSDDEDDDEDDDEDDDDKDGSEEKSSDAEEDKADDDDGDLKLSAKDDVKPQVDSQNSKEKKKKKRKGKSVLKDGGEEDVASGRDEALKITSQVDEYDHDTSDEEDIRNTVGNIPMEWYKDYPHIGYDLDGKKIFKPIRNKDELDEFLDKMENPDYWRTVQDKMTGADIRLSDEQVDLVHRLQQGKFGDVNFNEYEPAVDFFSNEVMIHPVTNRPQDKRSFIPSLIEKEKVGKLVHAIKMGWIKPRRPKETTPQYYDLWAKEDPNSILGRHKMHVPAPKMKLPGHEESYNPPPEYLLSEEERLAWAAQDPEDRKLSFLPQKFSCLRAVPAFSRFIHERFERCLDLYLCPRQRKMRVNVNPEDLIPKLPKPKDLQPFPTTQSLVYRGHSSLVRSISVSPSGQWLVSGSDDCTVRFWEVSTARCLKTVQVGGAVKGVAWNPNPSICLVAVSYEDSVLLLNPALGDRLLCTATDQLISSYAEPEEVKEQPVQWLVSEGEGHEQGHRLVLKHPKAVRQVTWHAKGDYLACVLPDSSSSVQVLIHQVSKRRTQNPFRKSKGLVQCVSFHPVRPYFFVATQRYVRVYNLIKQELTKKLMANCKWISSMAIHPGGDNVICGSYDCRLAWFDLDLSTKPYKVLRHHKKALRSVSFHSHYPLLASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLYT

Target ORF information:

RefSeq Version	NM_001077735.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio BOP1 ribosomal biogenesis factor (bop1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001077735.1

ORF Insert Sequence:

ATGAGCAAAT TAAAGAATAA GAAACGACAT TTAGAGGAGA ATGAAGAGGA ACAGTTGCCC 
ATCTTTGATA AGGACAGTGG TGAAGATGGT CATCTAGATG ATGGAGATGA GGATCCGGCT 
GATCTGTCAG ACAGTGAAGA GAGCGTTTTC TCTGGGCTTG AAGACTCGGG CAGTGATGAT 
GAGGATGATG ATGAAGATGA CGACGAAGAT GATGATGATA AGGATGGTTC TGAGGAAAAG 
AGCTCTGATG CAGAGGAAGA CAAAGCCGAT GATGATGATG GAGACCTCAA GCTTTCAGCC 
AAAGATGACG TCAAACCTCA GGTTGATAGC CAGAATTCAA AGGAGAAGAA GAAGAAGAAG 
AGAAAGGGTA AATCTGTGCT GAAGGATGGA GGAGAGGAGG ACGTTGCGTC GGGCAGAGAT 
GAGGCCCTGA AGATCACCTC TCAGGTGGAC GAATATGACC ACGACACATC AGATGAAGAG 
GACATTCGTA ACACGGTTGG GAACATCCCG ATGGAGTGGT ACAAGGATTA TCCTCACATC 
GGATACGACC TGGACGGAAA GAAGATCTTT AAACCGATCA GAAACAAAGA TGAGCTGGAC 
GAGTTTCTGG ACAAGATGGA GAATCCTGAT TACTGGCGAA CTGTCCAGGA CAAGATGACC 
GGCGCTGATA TCCGTCTGTC GGACGAGCAG GTGGATCTGG TCCACCGTCT GCAGCAGGGC 
AAATTCGGTG ACGTCAACTT CAACGAATAC GAGCCTGCAG TTGATTTCTT CTCCAATGAA 
GTGATGATCC ACCCCGTCAC CAACAGGCCT CAGGACAAAC GCAGCTTCAT TCCCTCGCTA 
ATCGAGAAAG AGAAGGTCGG GAAGTTGGTT CATGCCATTA AAATGGGCTG GATTAAGCCT 
CGCAGACCCA AGGAAACCAC GCCGCAGTAT TACGACCTCT GGGCCAAAGA AGACCCCAAC 
AGCATTCTGG GACGCCACAA GATGCACGTC CCAGCACCCA AGATGAAGCT TCCGGGACAT 
GAGGAGTCCT ACAACCCTCC TCCAGAATAC CTGCTGTCCG AGGAAGAGAG ACTGGCATGG 
GCTGCACAGG ACCCCGAGGA CAGAAAGCTG AGTTTCCTCC CGCAGAAGTT CTCGTGTCTG 
CGAGCCGTTC CTGCATTCTC ACGCTTCATT CACGAGCGCT TCGAGCGCTG CCTCGACCTC 
TACCTGTGTC CCAGACAGAG GAAGATGAGG GTGAACGTGA ACCCAGAAGA CCTGATTCCC 
AAACTTCCCA AGCCCAAAGA CCTGCAGCCG TTCCCCACCA CACAGTCTCT GGTGTATCGT 
GGTCACTCCA GTCTGGTCCG GAGCATCAGT GTCTCTCCCA GCGGTCAGTG GCTGGTGTCT 
GGCTCTGATG ACTGTACGGT GCGCTTCTGG GAGGTCAGCA CTGCACGCTG CCTGAAAACA 
GTGCAGGTAG GCGGAGCCGT GAAGGGCGTG GCCTGGAATC CCAATCCTTC CATCTGTTTG 
GTTGCTGTCA GCTATGAAGA CTCGGTGCTC CTGCTGAACC CTGCTCTGGG TGATCGGCTC 
CTCTGCACCG CTACAGATCA GCTCATCTCC TCCTACGCGG AGCCAGAGGA AGTGAAGGAG 
CAGCCGGTTC AGTGGCTCGT CTCAGAGGGC GAGGGTCACG AGCAGGGTCA CCGCCTCGTT 
CTCAAACACC CCAAGGCGGT GAGGCAGGTG ACGTGGCATG CTAAAGGAGA TTACCTGGCG 
TGTGTGCTGC CCGACAGCAG CAGCAGTGTT CAGGTGCTCA TCCACCAGGT GAGCAAGCGC 
AGGACGCAGA ACCCCTTCCG CAAGAGCAAG GGTCTGGTGC AGTGCGTCTC CTTCCACCCC 
GTCAGGCCCT ATTTCTTCGT GGCCACGCAG CGATACGTGC GCGTCTACAA CCTCATCAAG 
CAGGAGCTCA CCAAGAAGCT GATGGCCAAC TGCAAGTGGA TCTCCAGCAT GGCCATCCAT 
CCAGGAGGTG ACAATGTGAT ATGCGGCAGC TACGACTGTC GTCTGGCCTG GTTTGATCTG 
GATCTGTCCA CTAAACCGTA TAAAGTGCTC CGACATCATA AGAAGGCCCT GAGGAGCGTG 
TCCTTCCACA GCCACTACCC GCTGCTGGCA TCCGGCTCTG ACGACGGCAG TGTGATCGTC 
TGCCACGGCA TGGTCTACAA TGACCTGCTC CAGAATCCTC TGATTGTCCC GGTCAAGGTT 
TTGAAGGGTC ACAGCATCAC TCATGACCTC GGGGTCCTGG ACGTGACCTT TCACCCGACT 
CAACCCTGGG TGTTTTCCTC CGGGGCCGAC GCAACCATCC GACTCTACAC CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Cross talk between TP53 and c-Myc in the pathophysiology of Diamond-Blackfan anemia: Evidence from RPL11-deficient in vivo and in vitro models.
Biochemical and biophysical research communications495(2)1839-1845(2018 01)
Chakraborty A,Uechi T,Nakajima Y,Gazda HT,O'Donohue MF,Gleizes PE,Kenmochi N

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Hematopoietic gene expression profile in zebrafish kidney marrow.
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)
Song HD,Sun XJ,Deng M,Zhang GW,Zhou Y,Wu XY,Sheng Y,Chen Y,Ruan Z,Jiang CL,Fan HY,Zon LI,Kanki JP,Liu TX,Look AT,Chen Z

A gene expression screen in zebrafish embryogenesis.
Genome research11(12)1979-87(2001 Dec)
Kudoh T,Tsang M,Hukriede NA,Chen X,Dedekian M,Clarke CJ,Kiang A,Schultz S,Epstein JA,Toyama R,Dawid IB

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bop1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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