OT_ostta16g00440 cDNA ORF clone, Ostreococcus tauri

Gene
Clones
gRNAs

Summary

Gene Symbol	OT_ostta16g00440
Entrez Gene ID	9831166
Full Name	Glycosyl hydrolase, family 13, catalytic domain
Synonyms	Ot16g00380
Gene Type	protein-coding
Organism	Ostreococcus tauri

mRNA and Protein(s)

mRNA	Protein	Name
XM_003083440.1	XP_003083488.1	alpha amylase 1 (IC)
XM_022985140.1	XP_022840291.1	Glycosyl hydrolase, family 13, catalytic domain

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.
Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G
BMC genomics151103(2014 Dec)

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
Derelle E, Ferraz C, Rombauts S, Rouzé P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynié S, Cooke R, Saeys Y, Wuyts J, Jabbari K, Bowler C, Panaud O, Piégu B, Ball SG, Ral JP, Bouget FY, Piganeau G, De Baets B, Picard A, Delseny M, Demaille J, Van de Peer Y, Moreau H
Proceedings of the National Academy of Sciences of the United States of America103(31)11647-52(2006 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following OT_ostta16g00440 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the OT_ostta16g00440 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OOd00405	XM_003083440.1 Latest version!	Ostreococcus tauri alpha amylase 1 (IC) (Aamy1) mRNA, complete cds.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

OT_ostta16g00440 ( XM_003083440.1 ) cDNA ORF clone, Ostreococcus tauri -> XP_003083488.1 Ostreococcus tauri alpha amylase 1 (IC) (Aamy1) mRNA, complete cds.

Price & Availability↑

CloneID	OOd00405
Clone ID Related Accession (Same CDS sequence)	XM_003083440.1
Accession Version	XM_003083440.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2742bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1373472000000
Organism	Ostreococcus tauri
Product	alpha amylase 1 (IC)
Comment	PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_014441). COMPLETENESS: incomplete on both ends.

ATGGACGGAA ACACCGCCTT CGGGGCGTCG TCGCCCGCGA AGCCGGCTTT GACCATCCCG 
GAGCCGTTAT CGCACACGAG CGCGGAGACT TCACCTTCGT CCGCCATGAT CTCACTCACT 
TTCTCTGCGA CACGCGCGCG CGATGCAACA CTCGTCAGTC TTCACCGTCC ACGTCCGCCC 
ACCGCGATCG TCCACGCCGA TCATCCGCGC GCGCGCGTCT CGCCGCTCGA TCGCGCCGCC 
GCGCGCGCCG CGCGAGATCT CCCCCGCGCG CGCCCCCCCG CTCGCCCCCA CCCCCCACCG 
TCACCACCGA TCGTCCACGC GCGCGTCTTT ACACCCTTCC CGTCCCGACC ACCCATTCGA 
GACGCCGCGC CCACGACGCG CGAGACGACG ATGCGATCGC GCGCGCGCGC CATCGTCATT 
CATCCCCATC CATCGTCGCG GTCCCGTCGC GGTGTCGTCG NNNNNNNNNN NNNNNNNNNN 
CGGGCGCGCG GGCGCGGCGC GCCGTGGCGG ACGAGCGCGA GCGGGAGGAT GGGACGGGAC 
GATCGGTCGA GGACGAGAGC ACGGTGCGAT CGTATTCGGT GTTCGTGGAT AATCCCGTGG 
ATGGGACGAA CACGGTCGCT CGCGCGGACG GTGTCGGCGC TGACGAATTA CGGCTTGGAC 
GTCGTGAGCT CGTTCACGCG AACGACGGAT GATGGGCGGA CGGTGGACGA TGTGTTTTAT 
GTGACGATGA CGACGAGGTC GTTGGACGCC TCGTTCGACG ACGCCGCCGC GGATGCGGGG 
CAGGTTCCGG AGAGTAGTTT TCAAGATTTG GAGAGGTTCA TCGTCCAGGC GTTAACCGTC 
ACCGGGATGG GTGAGCGTTA CACGTCGCGA ATGCCGAAAA TTTATGGCGT CGCCGCGGAA 
ACGGAGATTT TAGCCATGCA GCACAGGCTC GGTGAGATTA TTGGAGACGG TTCGCAGGCT 
ATCGGCGAGT CGGAGAGCAT GGCGCTTCAG CTCGAGTTGG TCGCGGCCGA GTTGGCGAGC 
GCCACGGCGC GTCTCGTACA GATTGATCGT GTGTATTCCA AGGTGGAGAG CTGTGGAATA 
GATGCTTTGT GGGAACTCGA TGGTTCGGAC GAGGTAACGC TGAGTGAGGA GTGTATAAGG 
CTTGAGGCGG AGCGCGCGGA TGCGAGCGCC ATGTTCGGGC GTAAGCTCGC CGCGATGGAA 
GCTGCGCTCG CGTCTCGCGA ACGCGCGCGC GCGAAGATCG TGCGGAAGAA TCAAAACGAC 
GAGTCTTCCA TGAAAAGGGC ACAGGGTGAT GCGGTCTCTA CGCTAGCAAA GTCGAGGCTG 
CCCTTGGATG AGAGGAACAC CGTCGCCGCC CCAAAGCTGA AAAAGATTAC CGAGATGGCC 
CCGCAAACAC CCTTTGCATC GCCTCTGAGC CGCCCGCTAC CGTCTACGCC GTGCGGAAAT 
GGTCGTGAAT TAATTCTTCA AGGATTTAAT TGGGAGTCGT GCCAACACGC AGAAAAAATG 
GGCGCGTCTT GGTACGCGCA CCTGACTGAG ATGACCCCTC AAATCGCCGA AGCCGGTTTC 
ACATCCGTGT GGTTGCCGCC GCCGACGAAA TCTGTGAGTA AACAAGGATA TCTACCGACG 
GATTTGTACA ATCTGAACTC ATTCTATGGG TCTGAAGATG AGCTGAGGTC TTGTGTCGCG 
CGCCTGCGTG AGTACAACAT CACCCCAGTG GCGGACATTG TCATCAATCA TAGATGCGCC 
GAGGCAAAGG ATGACGCCGG TCGGTGGAAC AAGTACACCG GGAAGCTAGA TTGGGATGAG 
CGCGCGATCA CGTGTGAGAA CCCCGCCTTT GGCGGCCGCG GGGCACATAA GACTGGCGAG 
GATTATCTCC CCGCGCCGAA TATCGATCAC ACGCAAGAGT TTGTTCGACG CGATTTGACC 
CAGTGGCTCG AATGGTTGCG TAGCGACGTC GGTTTCCGCG GTTGGAGGTT TGACTTCGTC 
AAGGGTTACA GTGGCGCCTT CACGGGAGAG TACGTCGAAG CTACGCGACC GTTTTTGGCC 
TTTGGCGAGT TCTGGGACGA GTGTGGATAC AGGGATGGAG TCTTGGATTA TAACCAAGAC 
GCTCACCGCC AGCGCACGTG CAACTGGGTC GACTCCACGA CCGGTAACAC CGCCGCGTTC 
GACTTCACGA CGAAGGGAAT TTTGCAAGAA GCCGTCTCAC GCACCGAGTA CTGGCGATTG 
ATCGACAACA AAGGTCGTCC ACCGGGATTC TTAGGCATCT GGCCTTCTCG CGCCGTGACC 
TTCATAGAAA ATCACGACAC TGGGTCTACG CTCCAGCACT GGCCTTTCCC ATGGGACAAG 
GTCCTGCAAG GTTACTGCTA CATCTTGACG CATCCTGGAA CGCCTACGGT GTTCTTTGAT 
CACTGGGTCG ATCCAGTTTT CAAGCCATCC ATTGACGCGA TGCTTGAAGT TCGTAAGCGC 
AACCGTCTCT CGTCCAAGGA CGCGGCGATT CACATTGAGC GCGCCACCGC GGGAGTCTAC 
GCCGCACACG TAGGCCACGC GAAGGAGGCA TACACCGAAG GGCTGTGTAC CGATGTCGAC 
GTCACGCAGC CATCGATTTG CATGAAGATC GGGCATGAAG CCTGGTCGCC GAACGCGCAA 
AAAGTTGGAA ACCTATCTTG GCAGTGCACC GCTAGCGGCG ACGGCTGGGC GGTCTGGGAA 
GATAAGGCCC ATCTCGTCGA TGCCGAGAAG ATGACCAGAT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_003083488.1
CDS	1..2742
Translation	MDGNTAFGASSPAKPALTIPEPLSHTSAETSPSSAMISLTFSATRARDATLVSLHRPRPPTAIVHADHPRARVSPLDRAAARAARDLPRARPPARPHPPPSPPIVHARVFTPFPSRPPIRDAAPTTRETTMRSRARAIVIHPHPSSRSRRGVVnullnullnullnullnullnullnullRARGRGAPWRTSASGRMGRDDRSRTRARCDRIRCSWIIPWMGRTRSLARTVSALTNYGLDVVSSFTRTTDDGRTVDDVFYVTMTTRSLDASFDDAAADAGQVPESSFQDLERFIVQALTVTGMGERYTSRMPKIYGVAAETEILAMQHRLGEIIGDGSQAIGESESMALQLELVAAELASATARLVQIDRVYSKVESCGIDALWELDGSDEVTLSEECIRLEAERADASAMFGRKLAAMEAALASRERARAKIVRKNQNDESSMKRAQGDAVSTLAKSRLPLDERNTVAAPKLKKITEMAPQTPFASPLSRPLPSTPCGNGRELILQGFNWESCQHAEKMGASWYAHLTEMTPQIAEAGFTSVWLPPPTKSVSKQGYLPTDLYNLNSFYGSEDELRSCVARLREYNITPVADIVINHRCAEAKDDAGRWNKYTGKLDWDERAITCENPAFGGRGAHKTGEDYLPAPNIDHTQEFVRRDLTQWLEWLRSDVGFRGWRFDFVKGYSGAFTGEYVEATRPFLAFGEFWDECGYRDGVLDYNQDAHRQRTCNWVDSTTGNTAAFDFTTKGILQEAVSRTEYWRLIDNKGRPPGFLGIWPSRAVTFIENHDTGSTLQHWPFPWDKVLQGYCYILTHPGTPTVFFDHWVDPVFKPSIDAMLEVRKRNRLSSKDAAIHIERATAGVYAAHVGHAKEAYTEGLCTDVDVTQPSICMKIGHEAWSPNAQKVGNLSWQCTASGDGWAVWEDKAHLVDAEKMTR

Target ORF information:

RefSeq Version	XM_003083440.1
Organism	Ostreococcus tauri
Definition	Ostreococcus tauri alpha amylase 1 (IC) (Aamy1) mRNA, complete cds.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_003083440.1

ORF Insert Sequence:

ATGGACGGAA ACACCGCCTT CGGGGCGTCG TCGCCCGCGA AGCCGGCTTT GACCATCCCG 
GAGCCGTTAT CGCACACGAG CGCGGAGACT TCACCTTCGT CCGCCATGAT CTCACTCACT 
TTCTCTGCGA CACGCGCGCG CGATGCAACA CTCGTCAGTC TTCACCGTCC ACGTCCGCCC 
ACCGCGATCG TCCACGCCGA TCATCCGCGC GCGCGCGTCT CGCCGCTCGA TCGCGCCGCC 
GCGCGCGCCG CGCGAGATCT CCCCCGCGCG CGCCCCCCCG CTCGCCCCCA CCCCCCACCG 
TCACCACCGA TCGTCCACGC GCGCGTCTTT ACACCCTTCC CGTCCCGACC ACCCATTCGA 
GACGCCGCGC CCACGACGCG CGAGACGACG ATGCGATCGC GCGCGCGCGC CATCGTCATT 
CATCCCCATC CATCGTCGCG GTCCCGTCGC GGTGTCGTCG NNNNNNNNNN NNNNNNNNNN 
CGGGCGCGCG GGCGCGGCGC GCCGTGGCGG ACGAGCGCGA GCGGGAGGAT GGGACGGGAC 
GATCGGTCGA GGACGAGAGC ACGGTGCGAT CGTATTCGGT GTTCGTGGAT AATCCCGTGG 
ATGGGACGAA CACGGTCGCT CGCGCGGACG GTGTCGGCGC TGACGAATTA CGGCTTGGAC 
GTCGTGAGCT CGTTCACGCG AACGACGGAT GATGGGCGGA CGGTGGACGA TGTGTTTTAT 
GTGACGATGA CGACGAGGTC GTTGGACGCC TCGTTCGACG ACGCCGCCGC GGATGCGGGG 
CAGGTTCCGG AGAGTAGTTT TCAAGATTTG GAGAGGTTCA TCGTCCAGGC GTTAACCGTC 
ACCGGGATGG GTGAGCGTTA CACGTCGCGA ATGCCGAAAA TTTATGGCGT CGCCGCGGAA 
ACGGAGATTT TAGCCATGCA GCACAGGCTC GGTGAGATTA TTGGAGACGG TTCGCAGGCT 
ATCGGCGAGT CGGAGAGCAT GGCGCTTCAG CTCGAGTTGG TCGCGGCCGA GTTGGCGAGC 
GCCACGGCGC GTCTCGTACA GATTGATCGT GTGTATTCCA AGGTGGAGAG CTGTGGAATA 
GATGCTTTGT GGGAACTCGA TGGTTCGGAC GAGGTAACGC TGAGTGAGGA GTGTATAAGG 
CTTGAGGCGG AGCGCGCGGA TGCGAGCGCC ATGTTCGGGC GTAAGCTCGC CGCGATGGAA 
GCTGCGCTCG CGTCTCGCGA ACGCGCGCGC GCGAAGATCG TGCGGAAGAA TCAAAACGAC 
GAGTCTTCCA TGAAAAGGGC ACAGGGTGAT GCGGTCTCTA CGCTAGCAAA GTCGAGGCTG 
CCCTTGGATG AGAGGAACAC CGTCGCCGCC CCAAAGCTGA AAAAGATTAC CGAGATGGCC 
CCGCAAACAC CCTTTGCATC GCCTCTGAGC CGCCCGCTAC CGTCTACGCC GTGCGGAAAT 
GGTCGTGAAT TAATTCTTCA AGGATTTAAT TGGGAGTCGT GCCAACACGC AGAAAAAATG 
GGCGCGTCTT GGTACGCGCA CCTGACTGAG ATGACCCCTC AAATCGCCGA AGCCGGTTTC 
ACATCCGTGT GGTTGCCGCC GCCGACGAAA TCTGTGAGTA AACAAGGATA TCTACCGACG 
GATTTGTACA ATCTGAACTC ATTCTATGGG TCTGAAGATG AGCTGAGGTC TTGTGTCGCG 
CGCCTGCGTG AGTACAACAT CACCCCAGTG GCGGACATTG TCATCAATCA TAGATGCGCC 
GAGGCAAAGG ATGACGCCGG TCGGTGGAAC AAGTACACCG GGAAGCTAGA TTGGGATGAG 
CGCGCGATCA CGTGTGAGAA CCCCGCCTTT GGCGGCCGCG GGGCACATAA GACTGGCGAG 
GATTATCTCC CCGCGCCGAA TATCGATCAC ACGCAAGAGT TTGTTCGACG CGATTTGACC 
CAGTGGCTCG AATGGTTGCG TAGCGACGTC GGTTTCCGCG GTTGGAGGTT TGACTTCGTC 
AAGGGTTACA GTGGCGCCTT CACGGGAGAG TACGTCGAAG CTACGCGACC GTTTTTGGCC 
TTTGGCGAGT TCTGGGACGA GTGTGGATAC AGGGATGGAG TCTTGGATTA TAACCAAGAC 
GCTCACCGCC AGCGCACGTG CAACTGGGTC GACTCCACGA CCGGTAACAC CGCCGCGTTC 
GACTTCACGA CGAAGGGAAT TTTGCAAGAA GCCGTCTCAC GCACCGAGTA CTGGCGATTG 
ATCGACAACA AAGGTCGTCC ACCGGGATTC TTAGGCATCT GGCCTTCTCG CGCCGTGACC 
TTCATAGAAA ATCACGACAC TGGGTCTACG CTCCAGCACT GGCCTTTCCC ATGGGACAAG 
GTCCTGCAAG GTTACTGCTA CATCTTGACG CATCCTGGAA CGCCTACGGT GTTCTTTGAT 
CACTGGGTCG ATCCAGTTTT CAAGCCATCC ATTGACGCGA TGCTTGAAGT TCGTAAGCGC 
AACCGTCTCT CGTCCAAGGA CGCGGCGATT CACATTGAGC GCGCCACCGC GGGAGTCTAC 
GCCGCACACG TAGGCCACGC GAAGGAGGCA TACACCGAAG GGCTGTGTAC CGATGTCGAC 
GTCACGCAGC CATCGATTTG CATGAAGATC GGGCATGAAG CCTGGTCGCC GAACGCGCAA 
AAAGTTGGAA ACCTATCTTG GCAGTGCACC GCTAGCGGCG ACGGCTGGGC GGTCTGGGAA 
GATAAGGCCC ATCTCGTCGA TGCCGAGAAG ATGACCAGAT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.
BMC genomics151103(2014 Dec)
Blanc-Mathieu R,Verhelst B,Derelle E,Rombauts S,Bouget FY,Carré I,Château A,Eyre-Walker A,Grimsley N,Moreau H,Piégu B,Rivals E,Schackwitz W,Van de Peer Y,Piganeau G

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
Proceedings of the National Academy of Sciences of the United States of America103(31)11647-52(2006 Aug)
Derelle E,Ferraz C,Rombauts S,Rouzé P,Worden AZ,Robbens S,Partensky F,Degroeve S,Echeynié S,Cooke R,Saeys Y,Wuyts J,Jabbari K,Bowler C,Panaud O,Piégu B,Ball SG,Ral JP,Bouget FY,Piganeau G,De Baets B,Picard A,Delseny M,Demaille J,Van de Peer Y,Moreau H

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OT_ostta16g00440 cDNA ORF clone, Ostreococcus tauri

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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